Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00291 and CCNA_00292 are separated by 144 nucleotides CCNA_00292 and CCNA_00293 overlap by 8 nucleotides
CCNA_00291: CCNA_00291 - phosphate regulon sensor protein phoR, at 304,469 to 305,884
_00291
CCNA_00292: CCNA_00292 - phosphate transport system permease protein pstC, at 306,029 to 307,462
_00292
CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750
_00293
Position (kb)
306
307
308 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 305.033 kb on - strand, within CCNA_00291 at 305.051 kb on - strand, within CCNA_00291 at 305.097 kb on + strand, within CCNA_00291 at 305.097 kb on + strand, within CCNA_00291 at 305.097 kb on + strand, within CCNA_00291 at 305.105 kb on - strand, within CCNA_00291 at 305.155 kb on - strand, within CCNA_00291 at 305.158 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.177 kb on - strand, within CCNA_00291 at 305.177 kb on - strand, within CCNA_00291 at 305.189 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.214 kb on - strand, within CCNA_00291 at 305.262 kb on - strand, within CCNA_00291 at 305.269 kb on + strand, within CCNA_00291 at 305.305 kb on + strand, within CCNA_00291 at 305.305 kb on + strand, within CCNA_00291 at 305.305 kb on + strand, within CCNA_00291 at 305.310 kb on - strand, within CCNA_00291 at 305.313 kb on - strand, within CCNA_00291 at 305.334 kb on + strand, within CCNA_00291 at 305.342 kb on - strand, within CCNA_00291 at 305.342 kb on - strand, within CCNA_00291 at 305.360 kb on + strand, within CCNA_00291 at 305.381 kb on - strand, within CCNA_00291 at 305.402 kb on + strand, within CCNA_00291 at 305.402 kb on + strand, within CCNA_00291 at 305.404 kb on + strand, within CCNA_00291 at 305.412 kb on - strand, within CCNA_00291 at 305.503 kb on - strand, within CCNA_00291 at 305.577 kb on - strand, within CCNA_00291 at 305.633 kb on + strand, within CCNA_00291 at 305.687 kb on + strand, within CCNA_00291 at 305.717 kb on + strand, within CCNA_00291 at 305.717 kb on + strand, within CCNA_00291 at 305.719 kb on - strand at 305.725 kb on - strand, within CCNA_00291 at 305.728 kb on + strand, within CCNA_00291 at 305.762 kb on + strand at 305.783 kb on + strand at 305.783 kb on + strand at 305.783 kb on + strand at 305.796 kb on - strand at 305.807 kb on + strand at 305.824 kb on + strand at 305.832 kb on - strand at 305.921 kb on + strand at 305.921 kb on + strand at 305.936 kb on + strand at 305.944 kb on - strand at 305.964 kb on - strand at 305.995 kb on + strand at 306.003 kb on - strand at 306.014 kb on + strand at 306.014 kb on + strand at 306.014 kb on + strand at 306.015 kb on + strand at 306.022 kb on - strand at 306.022 kb on - strand at 306.072 kb on - strand at 306.100 kb on + strand at 306.151 kb on + strand at 306.424 kb on + strand, within CCNA_00292 at 306.471 kb on + strand, within CCNA_00292 at 306.476 kb on + strand, within CCNA_00292 at 306.476 kb on + strand, within CCNA_00292 at 306.998 kb on + strand, within CCNA_00292 at 307.414 kb on - strand at 307.441 kb on - strand at 307.451 kb on - strand at 307.547 kb on + strand at 307.735 kb on + strand at 307.871 kb on + strand, within CCNA_00293 at 307.984 kb on + strand at 308.038 kb on + strand, within CCNA_00293
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 305,033 - CCNA_00291 0.40 -0.7 305,051 - CCNA_00291 0.41 -0.2 305,097 + CCNA_00291 0.44 -0.4 305,097 + CCNA_00291 0.44 -0.2 305,097 + CCNA_00291 0.44 +0.6 305,105 - CCNA_00291 0.45 -0.8 305,155 - CCNA_00291 0.48 -0.7 305,158 + CCNA_00291 0.49 +0.8 305,169 + CCNA_00291 0.49 -0.0 305,169 + CCNA_00291 0.49 -0.7 305,169 + CCNA_00291 0.49 -0.7 305,169 + CCNA_00291 0.49 -0.3 305,169 + CCNA_00291 0.49 +0.0 305,169 + CCNA_00291 0.49 -1.0 305,177 - CCNA_00291 0.50 +0.6 305,177 - CCNA_00291 0.50 -1.1 305,189 + CCNA_00291 0.51 -1.3 305,206 + CCNA_00291 0.52 +1.1 305,206 + CCNA_00291 0.52 +0.4 305,206 + CCNA_00291 0.52 +0.7 305,206 + CCNA_00291 0.52 -0.8 305,206 + CCNA_00291 0.52 +0.5 305,214 - CCNA_00291 0.53 -0.1 305,262 - CCNA_00291 0.56 +1.1 305,269 + CCNA_00291 0.56 -0.1 305,305 + CCNA_00291 0.59 -1.1 305,305 + CCNA_00291 0.59 +0.2 305,305 + CCNA_00291 0.59 -0.2 305,310 - CCNA_00291 0.59 -0.4 305,313 - CCNA_00291 0.60 -1.1 305,334 + CCNA_00291 0.61 +0.1 305,342 - CCNA_00291 0.62 -0.9 305,342 - CCNA_00291 0.62 -1.4 305,360 + CCNA_00291 0.63 -1.1 305,381 - CCNA_00291 0.64 -0.9 305,402 + CCNA_00291 0.66 -0.4 305,402 + CCNA_00291 0.66 +0.9 305,404 + CCNA_00291 0.66 -0.5 305,412 - CCNA_00291 0.67 -0.3 305,503 - CCNA_00291 0.73 +0.8 305,577 - CCNA_00291 0.78 -0.8 305,633 + CCNA_00291 0.82 -0.8 305,687 + CCNA_00291 0.86 -0.8 305,717 + CCNA_00291 0.88 -0.9 305,717 + CCNA_00291 0.88 +2.6 305,719 - -1.6 305,725 - CCNA_00291 0.89 -1.1 305,728 + CCNA_00291 0.89 -0.3 305,762 + -0.1 305,783 + -0.1 305,783 + -0.2 305,783 + +1.3 305,796 - -1.5 305,807 + -0.2 305,824 + -0.3 305,832 - +0.6 305,921 + +1.1 305,921 + +0.0 305,936 + +0.1 305,944 - -0.3 305,964 - -2.1 305,995 + +0.2 306,003 - +1.4 306,014 + +0.6 306,014 + +0.6 306,014 + +0.2 306,015 + -0.7 306,022 - -0.9 306,022 - -0.4 306,072 - -0.7 306,100 + +2.6 306,151 + -0.2 306,424 + CCNA_00292 0.28 -1.1 306,471 + CCNA_00292 0.31 -2.0 306,476 + CCNA_00292 0.31 -0.3 306,476 + CCNA_00292 0.31 -1.8 306,998 + CCNA_00292 0.68 +1.6 307,414 - -0.2 307,441 - +0.6 307,451 - -1.4 307,547 + -1.7 307,735 + +0.6 307,871 + CCNA_00293 0.32 +0.3 307,984 + +1.6 308,038 + CCNA_00293 0.45 +0.1
Or see this region's nucleotide sequence