Experiment: Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0640 and BT0641 are separated by 111 nucleotides BT0641 and BT0642 are separated by 119 nucleotides BT0642 and BT0643 are separated by 35 nucleotides
BT0640: BT0640 - Fe-S oxidoreductases family 2 (NCBI ptt file), at 788,459 to 790,102
BT0640
BT0641: BT0641 - hypothetical protein (NCBI ptt file), at 790,214 to 790,615
BT0641
BT0642: BT0642 - RNA pseudouridylate synthase (NCBI ptt file), at 790,735 to 791,655
BT0642
BT0643: BT0643 - RNA methyltransferase (NCBI ptt file), at 791,691 to 793,055
BT0643
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 789.744 kb on - strand, within BT0640 at 789.808 kb on + strand, within BT0640 at 789.854 kb on + strand, within BT0640 at 789.906 kb on - strand, within BT0640 at 790.037 kb on + strand at 790.038 kb on - strand at 790.038 kb on - strand at 790.117 kb on - strand at 790.119 kb on + strand at 790.159 kb on - strand at 790.160 kb on + strand at 790.300 kb on - strand, within BT0641 at 790.311 kb on + strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.404 kb on + strand, within BT0641 at 790.438 kb on - strand, within BT0641 at 790.521 kb on + strand, within BT0641 at 790.532 kb on + strand, within BT0641 at 790.578 kb on + strand at 790.578 kb on + strand at 790.609 kb on + strand at 790.693 kb on + strand at 790.694 kb on - strand at 790.736 kb on + strand at 790.737 kb on - strand at 790.759 kb on - strand at 790.792 kb on + strand at 790.792 kb on + strand at 790.793 kb on - strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.815 kb on - strand at 790.894 kb on + strand, within BT0642 at 790.900 kb on - strand, within BT0642 at 790.900 kb on - strand, within BT0642 at 790.910 kb on - strand, within BT0642 at 790.924 kb on + strand, within BT0642 at 790.941 kb on + strand, within BT0642 at 790.973 kb on + strand, within BT0642 at 790.984 kb on - strand, within BT0642 at 791.050 kb on + strand, within BT0642 at 791.055 kb on - strand, within BT0642 at 791.093 kb on + strand, within BT0642 at 791.126 kb on - strand, within BT0642 at 791.168 kb on - strand, within BT0642 at 791.206 kb on + strand, within BT0642 at 791.217 kb on + strand, within BT0642 at 791.272 kb on + strand, within BT0642 at 791.293 kb on - strand, within BT0642 at 791.294 kb on + strand, within BT0642 at 791.295 kb on - strand, within BT0642 at 791.364 kb on + strand, within BT0642 at 791.366 kb on + strand, within BT0642 at 791.367 kb on - strand, within BT0642 at 791.488 kb on - strand, within BT0642 at 791.572 kb on + strand at 791.573 kb on - strand at 791.598 kb on - strand at 791.605 kb on - strand at 791.605 kb on - strand at 791.732 kb on + strand at 791.744 kb on + strand at 791.744 kb on + strand at 791.745 kb on - strand at 791.749 kb on - strand at 791.793 kb on + strand at 791.831 kb on - strand, within BT0643 at 792.003 kb on - strand, within BT0643 at 792.053 kb on + strand, within BT0643 at 792.112 kb on + strand, within BT0643 at 792.113 kb on - strand, within BT0643 at 792.114 kb on + strand, within BT0643 at 792.167 kb on + strand, within BT0643 at 792.167 kb on + strand, within BT0643 at 792.273 kb on + strand, within BT0643 at 792.274 kb on - strand, within BT0643 at 792.279 kb on + strand, within BT0643 at 792.280 kb on - strand, within BT0643 at 792.299 kb on + strand, within BT0643 at 792.300 kb on - strand, within BT0643 at 792.317 kb on + strand, within BT0643 at 792.320 kb on + strand, within BT0643 at 792.325 kb on + strand, within BT0643 at 792.325 kb on + strand, within BT0643 at 792.384 kb on + strand, within BT0643 at 792.508 kb on + strand, within BT0643 at 792.548 kb on + strand, within BT0643
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM remove 789,744 - BT0640 0.78 -1.1 789,808 + BT0640 0.82 -1.6 789,854 + BT0640 0.85 -2.8 789,906 - BT0640 0.88 -1.6 790,037 + -1.2 790,038 - -1.8 790,038 - -1.1 790,117 - -1.0 790,119 + -1.0 790,159 - -0.6 790,160 + -1.7 790,300 - BT0641 0.21 -0.4 790,311 + BT0641 0.24 -0.2 790,355 - BT0641 0.35 -1.0 790,355 - BT0641 0.35 -0.4 790,355 - BT0641 0.35 -1.0 790,404 + BT0641 0.47 -0.9 790,438 - BT0641 0.56 -0.0 790,521 + BT0641 0.76 -2.3 790,532 + BT0641 0.79 -1.0 790,578 + -1.3 790,578 + -0.0 790,609 + +0.2 790,693 + +0.6 790,694 - -0.0 790,736 + -0.6 790,737 - +0.5 790,759 - -0.3 790,792 + -0.0 790,792 + -0.8 790,793 - -1.2 790,814 + +0.2 790,814 + -3.7 790,814 + +0.7 790,814 + -0.9 790,815 - -0.1 790,894 + BT0642 0.17 -0.8 790,900 - BT0642 0.18 -0.6 790,900 - BT0642 0.18 -0.0 790,910 - BT0642 0.19 +1.0 790,924 + BT0642 0.21 -0.0 790,941 + BT0642 0.22 +2.0 790,973 + BT0642 0.26 -2.0 790,984 - BT0642 0.27 +1.1 791,050 + BT0642 0.34 -1.3 791,055 - BT0642 0.35 -0.4 791,093 + BT0642 0.39 -1.0 791,126 - BT0642 0.42 -0.6 791,168 - BT0642 0.47 +1.0 791,206 + BT0642 0.51 -0.5 791,217 + BT0642 0.52 -2.0 791,272 + BT0642 0.58 +0.6 791,293 - BT0642 0.61 -0.6 791,294 + BT0642 0.61 +1.6 791,295 - BT0642 0.61 -0.0 791,364 + BT0642 0.68 +0.6 791,366 + BT0642 0.69 -1.6 791,367 - BT0642 0.69 +0.6 791,488 - BT0642 0.82 -1.1 791,572 + -0.8 791,573 - -0.0 791,598 - -2.0 791,605 - -1.5 791,605 - -0.2 791,732 + -1.0 791,744 + -3.0 791,744 + -1.6 791,745 - -0.0 791,749 - -1.3 791,793 + -0.0 791,831 - BT0643 0.10 -2.6 792,003 - BT0643 0.23 -3.6 792,053 + BT0643 0.27 -2.8 792,112 + BT0643 0.31 -1.0 792,113 - BT0643 0.31 -0.0 792,114 + BT0643 0.31 -0.9 792,167 + BT0643 0.35 -1.3 792,167 + BT0643 0.35 -2.3 792,273 + BT0643 0.43 -0.3 792,274 - BT0643 0.43 -2.6 792,279 + BT0643 0.43 -0.6 792,280 - BT0643 0.43 -0.6 792,299 + BT0643 0.45 -2.4 792,300 - BT0643 0.45 -1.0 792,317 + BT0643 0.46 -0.9 792,320 + BT0643 0.46 -0.8 792,325 + BT0643 0.46 -1.6 792,325 + BT0643 0.46 -2.3 792,384 + BT0643 0.51 -2.3 792,508 + BT0643 0.60 -1.0 792,548 + BT0643 0.63 -0.0
Or see this region's nucleotide sequence