Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0511
Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (60/30-60 mM) |
|---|---|---|---|---|---|
| remove | |||||
| 584,827 | + | -0.3 | |||
| 584,854 | - | -0.4 | |||
| 584,899 | - | +1.4 | |||
| 584,931 | - | DVU0511 | 0.16 | -0.5 | |
| 585,088 | + | DVU0511 | 0.46 | -0.7 | |
| 585,096 | - | DVU0511 | 0.48 | +0.4 | |
| 585,096 | - | DVU0511 | 0.48 | -0.7 | |
| 585,593 | - | -0.4 | |||
| 585,619 | - | -0.2 | |||
| 585,626 | + | -1.0 | |||
| 585,643 | + | +0.2 | |||
| 585,700 | - | -0.2 | |||
| 585,708 | + | -1.8 | |||
| 585,716 | - | +0.1 | |||
| 585,742 | - | +0.1 | |||
| 585,743 | + | -0.1 | |||
| 585,836 | + | flgF | DVU0512 | 0.16 | +0.2 |
| 585,838 | + | flgF | DVU0512 | 0.17 | -1.1 |
| 585,913 | - | flgF | DVU0512 | 0.26 | +1.0 |
| 585,920 | - | flgF | DVU0512 | 0.27 | -0.3 |
| 585,965 | + | flgF | DVU0512 | 0.33 | +0.1 |
| 586,029 | - | flgF | DVU0512 | 0.41 | +0.5 |
| 586,037 | - | flgF | DVU0512 | 0.42 | +0.3 |
| 586,097 | - | flgF | DVU0512 | 0.50 | +0.1 |
| 586,104 | + | flgF | DVU0512 | 0.51 | +0.1 |
| 586,163 | + | flgF | DVU0512 | 0.58 | +0.7 |
| 586,200 | - | flgF | DVU0512 | 0.63 | -0.0 |
| 586,207 | + | flgF | DVU0512 | 0.64 | -0.8 |
| 586,209 | - | flgF | DVU0512 | 0.64 | +0.8 |
| 586,209 | - | flgF | DVU0512 | 0.64 | -0.1 |
| 586,225 | - | flgF | DVU0512 | 0.66 | -0.6 |
| 586,269 | + | flgF | DVU0512 | 0.72 | +0.6 |
| 586,354 | + | flgF | DVU0512 | 0.83 | +0.3 |
Or see this region's nucleotide sequence