Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0406 and rlpA are separated by 168 nucleotides rlpA and DVU0408 are separated by 90 nucleotides
DVU0406: DVU0406 - membrane protein, putative (TIGR), at 454,663 to 455,601
DVU0406
DVU0407: rlpA - rare lipoprotein A family protein (TIGR), at 455,770 to 456,414
rlpA
DVU0408: DVU0408 - response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR), at 456,505 to 458,652
DVU0408
Position (kb) 455
456
457 Strain fitness (log2 ratio) -1
0
1 at 454.796 kb on + strand, within DVU0406 at 454.813 kb on - strand, within DVU0406 at 454.821 kb on - strand, within DVU0406 at 454.882 kb on + strand, within DVU0406 at 454.959 kb on + strand, within DVU0406 at 454.990 kb on - strand, within DVU0406 at 454.993 kb on + strand, within DVU0406 at 455.000 kb on + strand, within DVU0406 at 455.102 kb on - strand, within DVU0406 at 455.184 kb on - strand, within DVU0406 at 455.184 kb on - strand, within DVU0406 at 455.247 kb on - strand, within DVU0406 at 455.277 kb on - strand, within DVU0406 at 455.279 kb on + strand, within DVU0406 at 455.287 kb on - strand, within DVU0406 at 455.364 kb on - strand, within DVU0406 at 455.365 kb on - strand, within DVU0406 at 455.570 kb on + strand at 455.578 kb on - strand at 455.578 kb on - strand at 455.697 kb on - strand at 455.967 kb on + strand, within rlpA at 455.975 kb on + strand, within rlpA at 456.125 kb on + strand, within rlpA at 456.134 kb on - strand, within rlpA at 456.154 kb on + strand, within rlpA at 456.165 kb on - strand, within rlpA at 456.572 kb on - strand at 456.575 kb on + strand at 456.575 kb on + strand at 456.583 kb on - strand at 456.625 kb on + strand at 456.625 kb on + strand at 456.633 kb on - strand at 456.633 kb on - strand at 456.636 kb on + strand at 456.703 kb on - strand at 456.703 kb on - strand at 456.724 kb on - strand, within DVU0408 at 456.808 kb on - strand, within DVU0408 at 456.854 kb on - strand, within DVU0408 at 456.865 kb on + strand, within DVU0408 at 456.895 kb on + strand, within DVU0408 at 456.902 kb on + strand, within DVU0408 at 456.941 kb on + strand, within DVU0408 at 457.109 kb on - strand, within DVU0408 at 457.150 kb on + strand, within DVU0408 at 457.176 kb on + strand, within DVU0408 at 457.229 kb on - strand, within DVU0408 at 457.253 kb on + strand, within DVU0408 at 457.258 kb on + strand, within DVU0408 at 457.260 kb on - strand, within DVU0408 at 457.266 kb on - strand, within DVU0408 at 457.283 kb on - strand, within DVU0408
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 454,796 + DVU0406 0.14 -0.0 454,813 - DVU0406 0.16 -0.5 454,821 - DVU0406 0.17 -0.2 454,882 + DVU0406 0.23 +1.0 454,959 + DVU0406 0.32 -0.1 454,990 - DVU0406 0.35 +0.6 454,993 + DVU0406 0.35 -0.4 455,000 + DVU0406 0.36 -0.0 455,102 - DVU0406 0.47 -0.9 455,184 - DVU0406 0.55 +1.1 455,184 - DVU0406 0.55 -0.1 455,247 - DVU0406 0.62 -0.1 455,277 - DVU0406 0.65 +0.1 455,279 + DVU0406 0.66 -0.7 455,287 - DVU0406 0.66 -0.5 455,364 - DVU0406 0.75 +1.2 455,365 - DVU0406 0.75 -0.2 455,570 + -0.1 455,578 - +1.0 455,578 - -0.6 455,697 - +0.1 455,967 + rlpA DVU0407 0.31 +0.5 455,975 + rlpA DVU0407 0.32 +0.2 456,125 + rlpA DVU0407 0.55 -0.4 456,134 - rlpA DVU0407 0.56 +0.0 456,154 + rlpA DVU0407 0.60 -0.2 456,165 - rlpA DVU0407 0.61 +0.3 456,572 - -0.4 456,575 + -0.3 456,575 + -0.6 456,583 - +0.9 456,625 + +1.6 456,625 + +1.4 456,633 - -0.3 456,633 - -1.4 456,636 + -1.0 456,703 - -0.0 456,703 - -0.9 456,724 - DVU0408 0.10 +0.0 456,808 - DVU0408 0.14 +0.4 456,854 - DVU0408 0.16 -0.5 456,865 + DVU0408 0.17 +0.0 456,895 + DVU0408 0.18 +0.6 456,902 + DVU0408 0.18 +0.6 456,941 + DVU0408 0.20 +0.4 457,109 - DVU0408 0.28 +0.4 457,150 + DVU0408 0.30 +0.2 457,176 + DVU0408 0.31 +1.1 457,229 - DVU0408 0.34 -1.1 457,253 + DVU0408 0.35 +0.4 457,258 + DVU0408 0.35 -0.4 457,260 - DVU0408 0.35 -0.3 457,266 - DVU0408 0.35 +0.1 457,283 - DVU0408 0.36 -1.3
Or see this region's nucleotide sequence