Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hit and hup-1 are separated by 27 nucleotides hup-1 and rlpA are separated by 347 nucleotides rlpA and DVU0398 are separated by 80 nucleotides
DVU0395: hit - HIT family protein (TIGR), at 443,991 to 444,410
hit
DVU0396: hup-1 - DNA-binding protein HU (TIGR), at 444,438 to 444,725
hup-1
DVU0397: rlpA - rare lipoprotein A, putative (TIGR), at 445,073 to 445,804
rlpA
DVU0398: DVU0398 - HMGL-like domain protein (TIGR), at 445,885 to 447,711
DVU0398
Position (kb) 445
446 Strain fitness (log2 ratio) -2
-1
0
1 at 444.176 kb on + strand, within hit at 444.234 kb on + strand, within hit at 444.242 kb on - strand, within hit at 444.242 kb on - strand, within hit at 444.394 kb on - strand at 444.857 kb on - strand at 444.871 kb on + strand at 444.980 kb on - strand at 444.985 kb on - strand at 445.134 kb on + strand at 445.168 kb on - strand, within rlpA at 445.270 kb on - strand, within rlpA at 445.290 kb on + strand, within rlpA at 445.290 kb on + strand, within rlpA at 445.300 kb on + strand, within rlpA at 445.308 kb on - strand, within rlpA at 445.377 kb on - strand, within rlpA at 445.389 kb on + strand, within rlpA at 445.397 kb on - strand, within rlpA at 445.492 kb on + strand, within rlpA at 445.497 kb on + strand, within rlpA at 445.515 kb on - strand, within rlpA at 445.572 kb on + strand, within rlpA at 445.619 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.681 kb on + strand, within rlpA at 445.703 kb on + strand, within rlpA at 445.705 kb on - strand, within rlpA at 445.720 kb on + strand, within rlpA at 445.760 kb on - strand at 445.760 kb on - strand at 445.802 kb on - strand at 445.846 kb on + strand at 445.847 kb on - strand at 445.862 kb on + strand at 445.877 kb on + strand at 445.877 kb on + strand at 445.877 kb on + strand at 446.036 kb on - strand at 446.067 kb on + strand at 446.070 kb on - strand, within DVU0398 at 446.367 kb on + strand, within DVU0398
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 444,176 + hit DVU0395 0.44 -0.9 444,234 + hit DVU0395 0.58 -0.5 444,242 - hit DVU0395 0.60 +0.7 444,242 - hit DVU0395 0.60 +0.8 444,394 - -0.3 444,857 - -0.7 444,871 + +0.3 444,980 - -0.4 444,985 - -0.1 445,134 + -1.8 445,168 - rlpA DVU0397 0.13 +0.1 445,270 - rlpA DVU0397 0.27 -0.9 445,290 + rlpA DVU0397 0.30 -0.5 445,290 + rlpA DVU0397 0.30 -0.1 445,300 + rlpA DVU0397 0.31 -0.8 445,308 - rlpA DVU0397 0.32 -1.3 445,377 - rlpA DVU0397 0.42 -1.3 445,389 + rlpA DVU0397 0.43 -1.1 445,397 - rlpA DVU0397 0.44 +0.3 445,492 + rlpA DVU0397 0.57 -0.5 445,497 + rlpA DVU0397 0.58 -0.7 445,515 - rlpA DVU0397 0.60 -0.4 445,572 + rlpA DVU0397 0.68 -0.3 445,619 + rlpA DVU0397 0.75 -0.9 445,662 + rlpA DVU0397 0.80 -0.9 445,662 + rlpA DVU0397 0.80 -1.1 445,662 + rlpA DVU0397 0.80 -1.2 445,662 + rlpA DVU0397 0.80 -0.5 445,662 + rlpA DVU0397 0.80 -0.1 445,662 + rlpA DVU0397 0.80 -1.0 445,662 + rlpA DVU0397 0.80 -0.9 445,662 + rlpA DVU0397 0.80 -0.8 445,662 + rlpA DVU0397 0.80 -1.6 445,670 - rlpA DVU0397 0.82 -1.4 445,670 - rlpA DVU0397 0.82 -2.0 445,670 - rlpA DVU0397 0.82 -0.1 445,670 - rlpA DVU0397 0.82 +0.2 445,670 - rlpA DVU0397 0.82 -0.8 445,670 - rlpA DVU0397 0.82 -0.4 445,670 - rlpA DVU0397 0.82 -1.8 445,670 - rlpA DVU0397 0.82 -0.3 445,670 - rlpA DVU0397 0.82 -1.1 445,681 + rlpA DVU0397 0.83 -0.8 445,703 + rlpA DVU0397 0.86 -0.6 445,705 - rlpA DVU0397 0.86 -1.1 445,720 + rlpA DVU0397 0.88 -0.9 445,760 - -0.4 445,760 - -0.7 445,802 - -0.5 445,846 + +0.0 445,847 - +0.5 445,862 + -0.2 445,877 + -0.2 445,877 + -0.2 445,877 + -0.2 446,036 - +0.1 446,067 + -0.7 446,070 - DVU0398 0.10 -1.0 446,367 + DVU0398 0.26 -1.3
Or see this region's nucleotide sequence