Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3374

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (60/30-60 mM)
3,545,741	+	ilvD	DVU3373	0.45	-1.3
3,545,766	-	ilvD	DVU3373	0.47	-2.6
3,545,837	+	ilvD	DVU3373	0.51	-0.7
3,545,837	+	ilvD	DVU3373	0.51	-2.1
3,545,845	-	ilvD	DVU3373	0.51	-0.3
3,545,869	-	ilvD	DVU3373	0.53	-1.7
3,545,923	+	ilvD	DVU3373	0.56	-1.7
3,546,025	+	ilvD	DVU3373	0.62	-1.1
3,546,033	-	ilvD	DVU3373	0.63	-1.4
3,546,108	-	ilvD	DVU3373	0.67	-0.7
3,546,118	-	ilvD	DVU3373	0.68	-0.8
3,546,188	-	ilvD	DVU3373	0.72	-2.9
3,546,205	+	ilvD	DVU3373	0.73	-1.1
3,546,261	-	ilvD	DVU3373	0.76	-1.6
3,546,270	+	ilvD	DVU3373	0.77	-2.9
3,546,324	+	ilvD	DVU3373	0.80	-1.7
3,546,332	-	ilvD	DVU3373	0.81	-0.4
3,546,370	+	ilvD	DVU3373	0.83	-1.7
3,546,468	-	ilvD	DVU3373	0.89	-1.5
3,546,475	+	ilvD	DVU3373	0.89	-2.2
3,546,488	+	ilvD	DVU3373	0.90	-1.1
3,546,566	+				-2.1
3,546,571	+				-2.2
3,546,571	+				-0.4
3,546,581	+				-0.7
3,546,586	+				-1.6
3,546,586	+				-0.7
3,546,728	-				-1.3
3,546,808	+		DVU3374	0.15	-2.2
3,546,821	-		DVU3374	0.16	-0.3
3,546,876	+		DVU3374	0.23	-1.5
3,546,903	+		DVU3374	0.26	-0.9
3,546,911	+		DVU3374	0.27	-2.9
3,546,924	-		DVU3374	0.28	-0.9
3,546,983	+		DVU3374	0.35	-0.5
3,547,008	-		DVU3374	0.38	-0.2
3,547,010	+		DVU3374	0.39	-0.4
3,547,031	+		DVU3374	0.41	-0.6
3,547,050	+		DVU3374	0.44	+0.7
3,547,058	-		DVU3374	0.44	+0.3
3,547,072	+		DVU3374	0.46	-0.3
3,547,102	-		DVU3374	0.50	-0.6
3,547,102	-		DVU3374	0.50	-0.9
3,547,117	-		DVU3374	0.52	+0.3
3,547,117	-		DVU3374	0.52	-0.5
3,547,296	-		DVU3374	0.73	-0.6
3,547,313	-		DVU3374	0.75	-1.4
3,547,328	+		DVU3374	0.77	-1.5
3,547,328	-		DVU3374	0.77	-0.4
3,547,347	+		DVU3374	0.79	+1.8
3,547,382	-		DVU3374	0.83	-0.5
3,547,382	-		DVU3374	0.83	-0.2
3,547,383	-		DVU3374	0.83	-1.6
3,547,431	+		DVU3374	0.89	+0.6
3,547,431	+		DVU3374	0.89	-1.4
3,547,439	-				-2.4
3,547,439	-				-0.1
3,547,461	-				-1.0
3,547,487	+				-0.8
3,547,517	-				+0.8
3,547,517	-				-0.2
3,547,545	+				-0.3
3,547,545	+				-0.7
3,547,545	+				-0.8
3,547,569	+				-0.2
3,547,625	+				-1.8
3,547,643	-	ftsE	DVU3375	0.11	-0.6
3,547,644	+	ftsE	DVU3375	0.11	-1.5
3,547,659	-	ftsE	DVU3375	0.14	-1.0
3,547,679	-	ftsE	DVU3375	0.16	-0.9
3,547,695	-	ftsE	DVU3375	0.19	-0.8
3,547,695	-	ftsE	DVU3375	0.19	+0.2
3,547,695	-	ftsE	DVU3375	0.19	+0.1
3,547,705	-	ftsE	DVU3375	0.20	-0.1
3,547,708	+	ftsE	DVU3375	0.20	+0.0
3,547,716	-	ftsE	DVU3375	0.21	-0.1
3,547,728	+	ftsE	DVU3375	0.23	-1.1
3,547,757	-	ftsE	DVU3375	0.27	-0.6
3,547,787	-	ftsE	DVU3375	0.31	-0.4
3,547,835	+	ftsE	DVU3375	0.38	-0.5
3,547,842	+	ftsE	DVU3375	0.39	+0.0
3,547,897	+	ftsE	DVU3375	0.47	-0.1
3,547,897	+	ftsE	DVU3375	0.47	-2.3
3,547,905	-	ftsE	DVU3375	0.48	-0.2
3,547,966	+	ftsE	DVU3375	0.56	-0.6
3,548,030	-	ftsE	DVU3375	0.65	+0.0
3,548,089	-	ftsE	DVU3375	0.74	-0.8
3,548,156	+	ftsE	DVU3375	0.83	-0.9
3,548,156	+	ftsE	DVU3375	0.83	+0.9
3,548,159	-	ftsE	DVU3375	0.83	-2.2
3,548,164	-	ftsE	DVU3375	0.84	-1.0
3,548,209	-				-2.0
3,548,260	+				-1.0
3,548,294	-				-0.1
3,548,299	-				-0.4
3,548,311	+				-0.6
3,548,357	+				-0.1
3,548,439	-				-0.4
3,548,442	+				+0.5
3,548,462	-				+0.0
3,548,481	-				-1.1