Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1874

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (60/30-60 mM)
1,939,909	-				+0.5
1,940,058	+				-0.8
1,940,156	+	ppiB-2	DVU1873	0.17	-0.1
1,940,156	+	ppiB-2	DVU1873	0.17	+0.2
1,940,156	+	ppiB-2	DVU1873	0.17	+0.3
1,940,164	-	ppiB-2	DVU1873	0.18	+0.4
1,940,182	-	ppiB-2	DVU1873	0.22	-0.3
1,940,190	-	ppiB-2	DVU1873	0.23	+0.0
1,940,212	+	ppiB-2	DVU1873	0.28	-0.4
1,940,587	-				-0.3
1,940,607	+				-0.1
1,940,632	-				-0.5
1,940,729	-				+0.4
1,940,894	-				+0.2
1,940,904	-				-0.3
1,940,914	-				-0.5
1,941,116	-				-0.4
1,941,154	+	clpB	DVU1874	0.11	+1.9
1,941,154	+	clpB	DVU1874	0.11	-0.3
1,941,168	+	clpB	DVU1874	0.11	-0.5
1,941,227	-	clpB	DVU1874	0.14	+0.4
1,941,275	-	clpB	DVU1874	0.16	-0.3
1,941,388	+	clpB	DVU1874	0.20	-2.3
1,941,396	-	clpB	DVU1874	0.20	-0.1
1,941,398	+	clpB	DVU1874	0.20	-1.1
1,941,398	+	clpB	DVU1874	0.20	-0.7
1,941,406	-	clpB	DVU1874	0.21	-1.7
1,941,492	-	clpB	DVU1874	0.24	+0.1
1,941,519	-	clpB	DVU1874	0.25	-1.4
1,941,673	+	clpB	DVU1874	0.31	-2.0
1,941,739	-	clpB	DVU1874	0.33	-0.9
1,941,828	-	clpB	DVU1874	0.37	-0.4
1,941,986	+	clpB	DVU1874	0.43	-0.1
1,942,033	-	clpB	DVU1874	0.45	-1.3
1,942,064	-	clpB	DVU1874	0.46	-0.4
1,942,092	-	clpB	DVU1874	0.47	-0.8
1,942,151	+	clpB	DVU1874	0.49	-0.2
1,942,183	+	clpB	DVU1874	0.51	-1.1
1,942,191	-	clpB	DVU1874	0.51	+0.9
1,942,191	-	clpB	DVU1874	0.51	-1.1
1,942,198	+	clpB	DVU1874	0.51	-0.6
1,942,198	+	clpB	DVU1874	0.51	-0.9
1,942,246	+	clpB	DVU1874	0.53	-0.8
1,942,246	+	clpB	DVU1874	0.53	-0.1
1,942,369	+	clpB	DVU1874	0.58	-0.7
1,942,463	+	clpB	DVU1874	0.61	-0.0
1,942,554	+	clpB	DVU1874	0.65	-0.6
1,942,701	+	clpB	DVU1874	0.70	-0.5
1,942,762	-	clpB	DVU1874	0.73	-0.0
1,942,783	+	clpB	DVU1874	0.74	-1.0
1,942,801	+	clpB	DVU1874	0.74	-0.6
1,942,802	-	clpB	DVU1874	0.74	-0.3
1,942,857	-	clpB	DVU1874	0.76	-0.7
1,942,857	-	clpB	DVU1874	0.76	-1.8
1,942,965	+	clpB	DVU1874	0.81	-0.7
1,943,039	-	clpB	DVU1874	0.83	-0.4
1,943,059	-	clpB	DVU1874	0.84	-0.7
1,943,102	-	clpB	DVU1874	0.86	-0.6
1,943,187	-	clpB	DVU1874	0.89	-0.5
1,943,431	-				-0.6
1,943,600	-		DVU1875	0.34	+0.1
1,943,643	-		DVU1875	0.47	+0.4
1,943,796	+				+1.4
1,943,809	+				-0.9
1,943,834	+				-0.6
1,943,879	+				-0.9
1,943,887	-				-0.9
1,943,888	+				+1.2
1,943,974	+	dnaJ	DVU1876	0.14	+0.9
1,943,974	+	dnaJ	DVU1876	0.14	-1.0
1,943,974	+	dnaJ	DVU1876	0.14	-0.3
1,943,974	+	dnaJ	DVU1876	0.14	-1.2
1,943,982	-	dnaJ	DVU1876	0.15	-0.2
1,943,982	-	dnaJ	DVU1876	0.15	-0.6
1,944,060	+	dnaJ	DVU1876	0.23	-1.6
1,944,060	+	dnaJ	DVU1876	0.23	-0.5
1,944,067	+	dnaJ	DVU1876	0.24	-1.5
1,944,122	+	dnaJ	DVU1876	0.29	+0.5
1,944,172	+	dnaJ	DVU1876	0.35	-0.3
1,944,421	-	dnaJ	DVU1876	0.61	-0.4