Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0902 and DVU0903 are separated by 4 nucleotides DVU0903 and recJ are separated by 56 nucleotides recJ and lipA are separated by 98 nucleotides lipA and lipB overlap by 71 nucleotides
DVU0902: DVU0902 - TPR domain protein (TIGR), at 993,889 to 994,746
DVU0902
DVU0903: DVU0903 - HD domain protein (TIGR), at 994,751 to 995,608
DVU0903
DVU0904: recJ - single-stranded-DNA-specific exonuclease RecJ (TIGR), at 995,665 to 997,380
recJ
DVU0905: lipA - lipoic acid synthetase (TIGR), at 997,479 to 998,375
lipA
DVU0906: lipB - lipoate-protein ligase B (TIGR), at 998,305 to 998,961
lipB
Position (kb) 995
996
997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 994.709 kb on - strand at 994.711 kb on + strand at 994.720 kb on + strand at 994.725 kb on - strand at 994.743 kb on - strand at 994.840 kb on - strand, within DVU0903 at 994.840 kb on - strand, within DVU0903 at 995.099 kb on + strand, within DVU0903 at 995.112 kb on - strand, within DVU0903 at 995.167 kb on + strand, within DVU0903 at 995.167 kb on + strand, within DVU0903 at 995.175 kb on - strand, within DVU0903 at 995.175 kb on - strand, within DVU0903 at 995.223 kb on + strand, within DVU0903 at 995.223 kb on + strand, within DVU0903 at 995.231 kb on - strand, within DVU0903 at 995.269 kb on + strand, within DVU0903 at 995.283 kb on + strand, within DVU0903 at 995.325 kb on + strand, within DVU0903 at 995.338 kb on - strand, within DVU0903 at 995.400 kb on + strand, within DVU0903 at 995.541 kb on - strand at 995.548 kb on + strand at 995.593 kb on - strand at 995.627 kb on - strand at 995.634 kb on - strand at 995.683 kb on - strand at 995.961 kb on - strand, within recJ at 996.290 kb on - strand, within recJ at 996.334 kb on + strand, within recJ at 996.342 kb on - strand, within recJ at 996.385 kb on + strand, within recJ at 996.393 kb on - strand, within recJ at 996.513 kb on + strand, within recJ at 996.658 kb on - strand, within recJ at 996.712 kb on + strand, within recJ at 996.797 kb on + strand, within recJ at 996.807 kb on - strand, within recJ at 996.898 kb on - strand, within recJ at 996.984 kb on - strand, within recJ at 997.200 kb on - strand, within recJ at 997.385 kb on + strand at 997.539 kb on + strand at 997.545 kb on + strand at 997.668 kb on - strand, within lipA at 997.795 kb on + strand, within lipA at 997.803 kb on - strand, within lipA at 997.813 kb on - strand, within lipA at 997.813 kb on - strand, within lipA at 997.879 kb on - strand, within lipA at 997.907 kb on - strand, within lipA at 997.968 kb on + strand, within lipA at 997.976 kb on - strand, within lipA at 997.986 kb on - strand, within lipA at 997.986 kb on - strand, within lipA at 998.021 kb on - strand, within lipA at 998.069 kb on + strand, within lipA at 998.252 kb on - strand, within lipA at 998.264 kb on - strand, within lipA at 998.277 kb on - strand, within lipA at 998.277 kb on - strand, within lipA at 998.277 kb on - strand, within lipA
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 994,709 - -0.2 994,711 + -0.7 994,720 + -0.2 994,725 - -0.8 994,743 - +0.1 994,840 - DVU0903 0.10 +0.5 994,840 - DVU0903 0.10 -0.8 995,099 + DVU0903 0.41 -0.1 995,112 - DVU0903 0.42 +0.1 995,167 + DVU0903 0.48 -0.8 995,167 + DVU0903 0.48 -0.6 995,175 - DVU0903 0.49 -0.9 995,175 - DVU0903 0.49 -0.2 995,223 + DVU0903 0.55 -1.7 995,223 + DVU0903 0.55 +0.3 995,231 - DVU0903 0.56 -0.4 995,269 + DVU0903 0.60 -0.3 995,283 + DVU0903 0.62 -0.1 995,325 + DVU0903 0.67 -0.5 995,338 - DVU0903 0.68 -0.2 995,400 + DVU0903 0.76 -0.6 995,541 - -0.0 995,548 + +0.0 995,593 - +0.1 995,627 - +0.2 995,634 - +0.2 995,683 - -0.8 995,961 - recJ DVU0904 0.17 -1.5 996,290 - recJ DVU0904 0.36 +1.7 996,334 + recJ DVU0904 0.39 -1.3 996,342 - recJ DVU0904 0.39 -0.0 996,385 + recJ DVU0904 0.42 +0.1 996,393 - recJ DVU0904 0.42 +0.4 996,513 + recJ DVU0904 0.49 -2.0 996,658 - recJ DVU0904 0.58 -1.6 996,712 + recJ DVU0904 0.61 -1.3 996,797 + recJ DVU0904 0.66 -1.7 996,807 - recJ DVU0904 0.67 -1.2 996,898 - recJ DVU0904 0.72 -1.0 996,984 - recJ DVU0904 0.77 -0.2 997,200 - recJ DVU0904 0.89 -0.9 997,385 + +0.2 997,539 + +0.0 997,545 + -0.0 997,668 - lipA DVU0905 0.21 +0.1 997,795 + lipA DVU0905 0.35 -0.2 997,803 - lipA DVU0905 0.36 -0.3 997,813 - lipA DVU0905 0.37 -0.6 997,813 - lipA DVU0905 0.37 -0.1 997,879 - lipA DVU0905 0.45 -0.1 997,907 - lipA DVU0905 0.48 +0.4 997,968 + lipA DVU0905 0.55 -0.1 997,976 - lipA DVU0905 0.55 -0.2 997,986 - lipA DVU0905 0.57 -0.2 997,986 - lipA DVU0905 0.57 -1.6 998,021 - lipA DVU0905 0.60 +0.6 998,069 + lipA DVU0905 0.66 +0.4 998,252 - lipA DVU0905 0.86 +0.5 998,264 - lipA DVU0905 0.88 -0.5 998,277 - lipA DVU0905 0.89 -0.1 998,277 - lipA DVU0905 0.89 +1.5 998,277 - lipA DVU0905 0.89 +1.5
Or see this region's nucleotide sequence