Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0756 and DVU0757 overlap by 1 nucleotides DVU0757 and DVU0758 are separated by 204 nucleotides DVU0758 and DVU0759 overlap by 23 nucleotides
DVU0756: DVU0756 - TPR domain protein (TIGR), at 848,084 to 848,797
DVU0756
DVU0757: DVU0757 - hypothetical protein (TIGR), at 848,797 to 849,117
DVU0757
DVU0758: DVU0758 - hypothetical protein (TIGR), at 849,322 to 849,771
DVU0758
DVU0759: DVU0759 - peptidase, M29 family (TIGR), at 849,749 to 850,954
DVU0759
Position (kb) 849
850 Strain fitness (log2 ratio) -2
-1
0
1
2 at 848.381 kb on - strand, within DVU0756 at 848.385 kb on + strand, within DVU0756 at 848.393 kb on - strand, within DVU0756 at 848.393 kb on - strand, within DVU0756 at 848.418 kb on - strand, within DVU0756 at 848.470 kb on - strand, within DVU0756 at 848.530 kb on - strand, within DVU0756 at 848.554 kb on - strand, within DVU0756 at 848.557 kb on - strand, within DVU0756 at 848.598 kb on - strand, within DVU0756 at 848.608 kb on + strand, within DVU0756 at 848.692 kb on - strand, within DVU0756 at 848.945 kb on - strand, within DVU0757 at 848.984 kb on + strand, within DVU0757 at 848.984 kb on + strand, within DVU0757 at 848.989 kb on + strand, within DVU0757 at 848.992 kb on - strand, within DVU0757 at 848.992 kb on - strand, within DVU0757 at 849.005 kb on - strand, within DVU0757 at 849.027 kb on - strand, within DVU0757 at 849.166 kb on - strand at 849.224 kb on + strand at 849.317 kb on - strand at 849.317 kb on - strand at 849.345 kb on - strand at 849.486 kb on - strand, within DVU0758 at 849.585 kb on + strand, within DVU0758 at 849.618 kb on - strand, within DVU0758 at 849.618 kb on - strand, within DVU0758 at 849.619 kb on - strand, within DVU0758 at 849.619 kb on - strand, within DVU0758 at 849.756 kb on + strand at 849.803 kb on + strand at 849.819 kb on + strand at 849.841 kb on + strand at 849.890 kb on - strand, within DVU0759 at 849.907 kb on - strand, within DVU0759 at 849.927 kb on + strand, within DVU0759 at 850.079 kb on + strand, within DVU0759 at 850.129 kb on + strand, within DVU0759 at 850.135 kb on - strand, within DVU0759 at 850.220 kb on + strand, within DVU0759 at 850.296 kb on - strand, within DVU0759 at 850.320 kb on - strand, within DVU0759 at 850.386 kb on - strand, within DVU0759 at 850.437 kb on - strand, within DVU0759 at 850.437 kb on - strand, within DVU0759 at 850.498 kb on + strand, within DVU0759 at 850.506 kb on - strand, within DVU0759 at 850.544 kb on - strand, within DVU0759 at 850.666 kb on + strand, within DVU0759 at 850.676 kb on + strand, within DVU0759 at 850.676 kb on + strand, within DVU0759
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 848,381 - DVU0756 0.42 -0.0 848,385 + DVU0756 0.42 +0.6 848,393 - DVU0756 0.43 -0.7 848,393 - DVU0756 0.43 -1.0 848,418 - DVU0756 0.47 -0.5 848,470 - DVU0756 0.54 +0.6 848,530 - DVU0756 0.62 -0.1 848,554 - DVU0756 0.66 -0.4 848,557 - DVU0756 0.66 -0.0 848,598 - DVU0756 0.72 +0.2 848,608 + DVU0756 0.73 +0.8 848,692 - DVU0756 0.85 -0.1 848,945 - DVU0757 0.46 -0.3 848,984 + DVU0757 0.58 +0.4 848,984 + DVU0757 0.58 +0.6 848,989 + DVU0757 0.60 -0.6 848,992 - DVU0757 0.61 +0.1 848,992 - DVU0757 0.61 +0.1 849,005 - DVU0757 0.65 +0.4 849,027 - DVU0757 0.72 -0.5 849,166 - +0.1 849,224 + -0.8 849,317 - +0.1 849,317 - -0.4 849,345 - -0.3 849,486 - DVU0758 0.36 -0.2 849,585 + DVU0758 0.58 -0.1 849,618 - DVU0758 0.66 -2.1 849,618 - DVU0758 0.66 -1.2 849,619 - DVU0758 0.66 -0.9 849,619 - DVU0758 0.66 -0.7 849,756 + -0.2 849,803 + -0.4 849,819 + -0.4 849,841 + -0.3 849,890 - DVU0759 0.12 +0.1 849,907 - DVU0759 0.13 -0.2 849,927 + DVU0759 0.15 +0.1 850,079 + DVU0759 0.27 +0.1 850,129 + DVU0759 0.32 +0.2 850,135 - DVU0759 0.32 +0.1 850,220 + DVU0759 0.39 -0.3 850,296 - DVU0759 0.45 +0.7 850,320 - DVU0759 0.47 +0.2 850,386 - DVU0759 0.53 -1.0 850,437 - DVU0759 0.57 -1.7 850,437 - DVU0759 0.57 +2.0 850,498 + DVU0759 0.62 +0.2 850,506 - DVU0759 0.63 -0.6 850,544 - DVU0759 0.66 +1.2 850,666 + DVU0759 0.76 -2.5 850,676 + DVU0759 0.77 -0.2 850,676 + DVU0759 0.77 +0.1
Or see this region's nucleotide sequence