Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0702
Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (60/30-60 mM) |
|---|---|---|---|---|---|
| remove | |||||
| 780,588 | + | glcB | DVU0701 | 0.83 | -1.1 |
| 780,589 | - | glcB | DVU0701 | 0.83 | -0.5 |
| 780,609 | + | glcB | DVU0701 | 0.84 | +0.3 |
| 780,617 | - | glcB | DVU0701 | 0.85 | +0.2 |
| 780,617 | - | glcB | DVU0701 | 0.85 | -0.3 |
| 780,716 | + | glcB | DVU0701 | 0.89 | +2.9 |
| 780,811 | - | -0.4 | |||
| 780,916 | + | -0.1 | |||
| 780,930 | - | +0.4 | |||
| 780,945 | - | +0.2 | |||
| 780,989 | + | -0.0 | |||
| 781,065 | - | -1.0 | |||
| 781,070 | - | -0.5 | |||
| 781,151 | + | -0.8 | |||
| 781,193 | + | -0.7 | |||
| 781,230 | + | -0.4 | |||
| 781,238 | - | -1.6 | |||
| 781,330 | + | -0.1 | |||
| 781,389 | - | -0.1 | |||
| 781,391 | + | -0.4 | |||
| 781,399 | - | +0.0 | |||
| 781,463 | + | -0.1 | |||
| 781,677 | + | DVU0702 | 0.25 | -0.2 | |
| 781,737 | - | DVU0702 | 0.38 | -1.2 | |
| 781,737 | - | DVU0702 | 0.38 | +0.3 | |
| 781,867 | + | DVU0702 | 0.67 | -1.6 | |
| 781,916 | + | DVU0702 | 0.78 | -0.2 | |
| 781,934 | + | DVU0702 | 0.82 | -0.2 | |
| 781,944 | - | DVU0702 | 0.85 | -0.9 | |
| 781,953 | + | DVU0702 | 0.87 | -0.2 | |
| 781,994 | - | -1.2 | |||
| 782,006 | + | -0.0 | |||
| 782,363 | + | +0.6 | |||
| 782,608 | + | lepA | DVU0703 | 0.23 | +1.1 |
| 782,768 | + | lepA | DVU0703 | 0.32 | -1.7 |
| 782,880 | + | lepA | DVU0703 | 0.38 | -0.2 |
Or see this region's nucleotide sequence