Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0659

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0657 and DVU0658 are separated by 10 nucleotidesDVU0658 and DVU0659 are separated by 258 nucleotidesDVU0659 and DVU0660 are separated by 210 nucleotidesDVU0660 and DVU0661 are separated by 217 nucleotides DVU0657: DVU0657 - heat shock protein, Hsp20 family (TIGR), at 729,163 to 729,576 DVU0657 DVU0658: DVU0658 - heat shock protein, Hsp20 family (TIGR), at 729,587 to 730,048 DVU0658 DVU0659: DVU0659 - hypothetical protein (TIGR), at 730,307 to 731,077 DVU0659 DVU0660: DVU0660 - phosphoesterase, putative (TIGR), at 731,288 to 731,854 DVU0660 DVU0661: DVU0661 - dihydrouridine synthase family protein (TIGR), at 732,072 to 733,070 DVU0661 Position (kb) 730 731 732Strain fitness (log2 ratio) -2 -1 0 1at 729.309 kb on - strand, within DVU0657at 729.605 kb on - strandat 729.616 kb on + strandat 729.616 kb on + strandat 729.905 kb on + strand, within DVU0658at 729.905 kb on + strand, within DVU0658at 729.920 kb on + strand, within DVU0658at 729.945 kb on + strand, within DVU0658at 730.064 kb on - strandat 730.096 kb on - strandat 730.096 kb on - strandat 730.143 kb on - strandat 730.143 kb on - strandat 730.171 kb on + strandat 730.277 kb on - strandat 730.310 kb on + strandat 730.349 kb on - strandat 730.455 kb on - strand, within DVU0659at 730.488 kb on + strand, within DVU0659at 730.549 kb on + strand, within DVU0659at 730.549 kb on + strand, within DVU0659at 730.575 kb on + strand, within DVU0659at 730.651 kb on - strand, within DVU0659at 730.721 kb on - strand, within DVU0659at 730.735 kb on + strand, within DVU0659at 730.737 kb on + strand, within DVU0659at 730.743 kb on - strand, within DVU0659at 730.743 kb on - strand, within DVU0659at 730.820 kb on - strand, within DVU0659at 730.851 kb on + strand, within DVU0659at 730.859 kb on - strand, within DVU0659at 730.859 kb on - strand, within DVU0659at 730.874 kb on + strand, within DVU0659at 731.007 kb on - strandat 731.007 kb on - strandat 731.140 kb on - strandat 731.158 kb on - strandat 731.177 kb on - strandat 731.200 kb on - strandat 731.235 kb on - strandat 731.248 kb on + strandat 731.286 kb on - strandat 731.419 kb on + strand, within DVU0660at 731.439 kb on - strand, within DVU0660at 731.645 kb on - strand, within DVU0660at 731.673 kb on + strand, within DVU0660at 731.696 kb on + strand, within DVU0660at 731.770 kb on + strand, within DVU0660at 731.785 kb on + strand, within DVU0660at 731.793 kb on - strand, within DVU0660at 731.864 kb on + strandat 731.872 kb on - strandat 732.072 kb on + strandat 732.075 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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729,309 - DVU0657 0.35 +0.1
729,605 - +1.1
729,616 + -0.2
729,616 + +0.2
729,905 + DVU0658 0.69 -0.2
729,905 + DVU0658 0.69 -1.4
729,920 + DVU0658 0.72 +0.1
729,945 + DVU0658 0.77 -0.1
730,064 - +0.3
730,096 - -0.5
730,096 - +0.9
730,143 - -0.7
730,143 - +0.1
730,171 + +1.3
730,277 - +0.2
730,310 + -0.1
730,349 - -1.2
730,455 - DVU0659 0.19 -0.5
730,488 + DVU0659 0.23 -0.6
730,549 + DVU0659 0.31 +0.0
730,549 + DVU0659 0.31 -0.3
730,575 + DVU0659 0.35 +0.2
730,651 - DVU0659 0.45 -1.0
730,721 - DVU0659 0.54 -0.6
730,735 + DVU0659 0.56 -0.8
730,737 + DVU0659 0.56 -0.8
730,743 - DVU0659 0.57 -0.2
730,743 - DVU0659 0.57 +0.0
730,820 - DVU0659 0.67 -1.7
730,851 + DVU0659 0.71 -0.0
730,859 - DVU0659 0.72 -1.1
730,859 - DVU0659 0.72 +0.1
730,874 + DVU0659 0.74 -0.4
731,007 - -0.3
731,007 - -0.1
731,140 - -0.9
731,158 - +0.4
731,177 - -0.6
731,200 - -1.2
731,235 - -0.8
731,248 + +0.2
731,286 - -2.3
731,419 + DVU0660 0.23 -0.9
731,439 - DVU0660 0.27 -0.8
731,645 - DVU0660 0.63 -1.2
731,673 + DVU0660 0.68 -0.3
731,696 + DVU0660 0.72 -0.6
731,770 + DVU0660 0.85 -1.2
731,785 + DVU0660 0.88 -0.5
731,793 - DVU0660 0.89 -0.9
731,864 + +0.5
731,872 - -0.2
732,072 + -0.6
732,075 - -0.1

Or see this region's nucleotide sequence