Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4974

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,897,358	+		Psyr_4973	0.14	+1.0
5,897,358	+		Psyr_4973	0.14	+0.1
5,897,358	+		Psyr_4973	0.14	+1.8
5,897,359	-		Psyr_4973	0.15	+0.6
5,897,359	-		Psyr_4973	0.15	-2.1
5,897,359	-		Psyr_4973	0.15	+0.3
5,897,470	+		Psyr_4973	0.25	-1.8
5,897,471	-		Psyr_4973	0.25	-2.3
5,897,602	+		Psyr_4973	0.37	-0.3
5,897,602	+		Psyr_4973	0.37	+0.0
5,897,602	+		Psyr_4973	0.37	-2.1
5,897,602	+		Psyr_4973	0.37	-0.0
5,897,602	+		Psyr_4973	0.37	+0.4
5,897,603	-		Psyr_4973	0.37	+1.0
5,897,603	-		Psyr_4973	0.37	+1.1
5,897,608	+		Psyr_4973	0.38	-2.0
5,897,608	+		Psyr_4973	0.38	-1.2
5,897,675	+		Psyr_4973	0.44	+0.9
5,897,676	-		Psyr_4973	0.44	-2.5
5,897,678	+		Psyr_4973	0.44	-2.8
5,897,678	+		Psyr_4973	0.44	-2.2
5,897,679	-		Psyr_4973	0.44	-2.8
5,897,741	+		Psyr_4973	0.50	+1.4
5,897,742	-		Psyr_4973	0.50	+0.8
5,897,754	-		Psyr_4973	0.51	+0.5
5,897,777	-		Psyr_4973	0.53	+0.0
5,897,940	-		Psyr_4973	0.68	+2.7
5,897,940	-		Psyr_4973	0.68	+1.2
5,897,991	+		Psyr_4973	0.73	-3.3
5,897,991	+		Psyr_4973	0.73	-3.5
5,897,991	+		Psyr_4973	0.73	+0.6
5,897,992	-		Psyr_4973	0.73	-0.2
5,897,992	-		Psyr_4973	0.73	-2.8
5,898,084	-		Psyr_4973	0.82	-0.3
5,898,149	-		Psyr_4973	0.88	+0.7
5,898,312	+				-1.1
5,898,312	+				-2.3
5,898,312	+				+0.6
5,898,312	+				-2.0
5,898,312	+				+2.0
5,898,312	+				-2.9
5,898,312	+				-4.1
5,898,312	+				+0.5
5,898,312	+				+1.5
5,898,312	+				-2.7
5,898,312	+				-1.9
5,898,312	+				+2.1
5,898,312	+				+1.2
5,898,312	+				-2.7
5,898,312	+				+2.7
5,898,312	+				-0.6
5,898,312	+				-4.0
5,898,312	+				-3.2
5,898,312	+				+1.7
5,898,312	+				+1.0
5,898,312	+				-0.1
5,898,312	+				-1.2
5,898,313	-				-0.9
5,898,313	-				+1.8
5,898,313	-				+1.3
5,898,313	-				+2.7
5,898,313	-				-2.3
5,898,313	-				-0.2
5,898,313	-				-1.8
5,898,313	-				+1.9
5,898,313	-				-1.7
5,898,313	-				-1.3
5,898,313	-				-1.1
5,898,313	-				-0.0
5,898,313	-				+0.7
5,898,313	-				-0.0
5,898,313	-				-3.0
5,898,313	-				+1.8
5,898,313	-				+1.4
5,898,313	-				+1.0
5,898,313	-				-1.0
5,898,313	-				-1.6
5,898,313	-				-1.7
5,898,313	-				+0.5
5,898,313	-				-3.5
5,898,313	-				-3.2
5,898,313	-				+3.0
5,898,313	-				-0.4
5,898,313	-				+2.2
5,898,313	-				-2.7
5,898,313	-				+0.6
5,898,313	-				+1.7
5,898,316	+				-0.1
5,898,316	+				-2.9
5,898,316	+				+0.5
5,898,316	+				+1.9
5,898,317	-				-1.1
5,898,317	-				+0.2
5,898,317	-				-3.5
5,898,317	-				-2.2
5,898,665	+		Psyr_4974	0.12	+1.4
5,898,666	-		Psyr_4974	0.12	-1.8
5,898,670	+		Psyr_4974	0.12	+1.3
5,898,671	-		Psyr_4974	0.12	+1.2
5,898,734	+		Psyr_4974	0.14	+0.6
5,898,735	-		Psyr_4974	0.15	+0.3
5,898,735	-		Psyr_4974	0.15	+1.2
5,898,735	-		Psyr_4974	0.15	-2.8
5,898,756	-		Psyr_4974	0.15	+1.0
5,898,779	+		Psyr_4974	0.16	+0.1
5,898,794	+		Psyr_4974	0.17	-3.1
5,898,794	+		Psyr_4974	0.17	-0.6
5,898,794	+		Psyr_4974	0.17	+1.0
5,898,794	+		Psyr_4974	0.17	-3.5
5,898,794	+		Psyr_4974	0.17	+0.7
5,898,794	+		Psyr_4974	0.17	+0.5
5,898,794	+		Psyr_4974	0.17	+1.1
5,898,794	+		Psyr_4974	0.17	+0.6
5,898,794	+		Psyr_4974	0.17	-0.8
5,898,795	-		Psyr_4974	0.17	-1.7
5,898,795	-		Psyr_4974	0.17	-2.1
5,898,795	-		Psyr_4974	0.17	-0.5
5,898,795	-		Psyr_4974	0.17	+0.5
5,898,867	-		Psyr_4974	0.19	-2.1
5,899,136	+		Psyr_4974	0.28	+0.9
5,899,148	+		Psyr_4974	0.29	-2.9
5,899,296	-		Psyr_4974	0.34	-1.7
5,899,296	-		Psyr_4974	0.34	+2.0
5,899,519	+		Psyr_4974	0.42	-0.3
5,899,741	-		Psyr_4974	0.49	-0.8
5,899,741	-		Psyr_4974	0.49	-0.5
5,899,796	+		Psyr_4974	0.51	-3.8
5,899,797	-		Psyr_4974	0.51	+0.6
5,899,807	+		Psyr_4974	0.52	-1.8
5,899,807	+		Psyr_4974	0.52	+1.1
5,899,807	+		Psyr_4974	0.52	-1.8
5,899,807	+		Psyr_4974	0.52	-3.6
5,899,807	+		Psyr_4974	0.52	-2.0
5,899,807	+		Psyr_4974	0.52	-0.5
5,899,807	+		Psyr_4974	0.52	-0.8
5,899,808	-		Psyr_4974	0.52	-2.8
5,899,808	-		Psyr_4974	0.52	-2.1
5,899,808	-		Psyr_4974	0.52	+2.6
5,899,808	-		Psyr_4974	0.52	+1.1
5,899,808	-		Psyr_4974	0.52	+0.2
5,899,808	-		Psyr_4974	0.52	+2.5
5,899,808	-		Psyr_4974	0.52	-0.3
5,899,808	-		Psyr_4974	0.52	-0.2
5,899,808	-		Psyr_4974	0.52	+1.0
5,899,808	-		Psyr_4974	0.52	+0.0
5,899,808	-		Psyr_4974	0.52	-0.1
5,899,845	-		Psyr_4974	0.53	+0.8
5,899,846	+		Psyr_4974	0.53	-2.5
5,899,846	+		Psyr_4974	0.53	-0.1
5,899,846	+		Psyr_4974	0.53	-2.2
5,899,846	+		Psyr_4974	0.53	-0.4
5,899,846	+		Psyr_4974	0.53	-3.8
5,899,846	+		Psyr_4974	0.53	-0.2
5,899,846	+		Psyr_4974	0.53	-3.2
5,899,847	-		Psyr_4974	0.53	+0.2
5,899,847	-		Psyr_4974	0.53	-0.9
5,899,847	-		Psyr_4974	0.53	+0.5
5,899,847	-		Psyr_4974	0.53	-2.6
5,899,847	-		Psyr_4974	0.53	+0.4
5,899,847	-		Psyr_4974	0.53	+1.2
5,899,847	-		Psyr_4974	0.53	+0.3
5,899,877	-		Psyr_4974	0.54	+5.1
5,899,877	-		Psyr_4974	0.54	+0.4
5,899,931	-		Psyr_4974	0.56	-2.6
5,899,942	+		Psyr_4974	0.56	+1.6
5,899,942	+		Psyr_4974	0.56	+1.0
5,899,943	-		Psyr_4974	0.57	+1.5
5,900,033	+		Psyr_4974	0.60	-0.1
5,900,063	+		Psyr_4974	0.61	+0.0
5,900,063	+		Psyr_4974	0.61	+1.5
5,900,063	+		Psyr_4974	0.61	+0.6
5,900,063	+		Psyr_4974	0.61	+0.1
5,900,063	+		Psyr_4974	0.61	+0.7
5,900,063	+		Psyr_4974	0.61	+0.6
5,900,064	-		Psyr_4974	0.61	+1.0
5,900,064	-		Psyr_4974	0.61	-2.2
5,900,064	-		Psyr_4974	0.61	-1.4
5,900,064	-		Psyr_4974	0.61	-0.4
5,900,064	-		Psyr_4974	0.61	+1.0
5,900,064	-		Psyr_4974	0.61	+0.7
5,900,064	-		Psyr_4974	0.61	+0.5
5,900,064	-		Psyr_4974	0.61	+0.7
5,900,253	-		Psyr_4974	0.67	+1.8
5,900,253	-		Psyr_4974	0.67	+1.2
5,900,300	-		Psyr_4974	0.69	-3.6
5,900,312	-		Psyr_4974	0.69	+0.8
5,900,357	+		Psyr_4974	0.71	-2.6
5,900,357	+		Psyr_4974	0.71	-2.3
5,900,359	+		Psyr_4974	0.71	-0.3
5,900,359	+		Psyr_4974	0.71	-0.9
5,900,360	-		Psyr_4974	0.71	-2.8
5,900,360	-		Psyr_4974	0.71	-2.1
5,900,360	-		Psyr_4974	0.71	-0.6
5,900,419	+		Psyr_4974	0.73	-3.4
5,900,419	+		Psyr_4974	0.73	+1.2
5,900,420	-		Psyr_4974	0.73	+0.7
5,900,420	-		Psyr_4974	0.73	+0.4
5,900,437	+		Psyr_4974	0.74	+1.8
5,900,493	+		Psyr_4974	0.76	+0.4
5,900,493	+		Psyr_4974	0.76	-3.4
5,900,494	-		Psyr_4974	0.76	-3.1
5,900,494	-		Psyr_4974	0.76	+0.5
5,900,494	-		Psyr_4974	0.76	-0.5
5,900,577	+		Psyr_4974	0.79	+1.2
5,900,577	+		Psyr_4974	0.79	+1.6
5,900,577	+		Psyr_4974	0.79	+1.4
5,900,578	-		Psyr_4974	0.79	+0.3
5,900,578	-		Psyr_4974	0.79	+1.4
5,900,696	+		Psyr_4974	0.83	-0.9
5,900,696	+		Psyr_4974	0.83	+0.5
5,900,696	+		Psyr_4974	0.83	-0.0
5,900,696	+		Psyr_4974	0.83	+0.5
5,900,696	+		Psyr_4974	0.83	+0.1
5,900,696	+		Psyr_4974	0.83	-3.3
5,900,696	+		Psyr_4974	0.83	-0.1
5,900,696	+		Psyr_4974	0.83	-3.0
5,900,696	+		Psyr_4974	0.83	+0.8
5,900,696	+		Psyr_4974	0.83	+0.2
5,900,696	+		Psyr_4974	0.83	-2.4
5,900,697	-		Psyr_4974	0.83	-3.6
5,900,697	-		Psyr_4974	0.83	+1.7
5,900,697	-		Psyr_4974	0.83	-1.9
5,900,697	-		Psyr_4974	0.83	+2.0
5,900,697	-		Psyr_4974	0.83	-1.0
5,900,697	-		Psyr_4974	0.83	+1.4
5,900,720	-		Psyr_4974	0.84	+1.1
5,900,751	+		Psyr_4974	0.85	+1.3
5,900,752	-		Psyr_4974	0.85	-2.2
5,900,839	+		Psyr_4974	0.88	-0.7
5,900,839	+		Psyr_4974	0.88	+1.3
5,900,857	+		Psyr_4974	0.88	+1.5
5,900,897	+		Psyr_4974	0.90	+1.0
5,900,897	+		Psyr_4974	0.90	+0.0
5,900,898	-		Psyr_4974	0.90	-1.6
5,900,898	-		Psyr_4974	0.90	-0.3
5,900,899	+		Psyr_4974	0.90	-3.1
5,900,899	+		Psyr_4974	0.90	-2.0
5,900,899	+		Psyr_4974	0.90	-1.0
5,900,900	-		Psyr_4974	0.90	-3.6
5,900,900	-		Psyr_4974	0.90	-1.0
5,900,900	-		Psyr_4974	0.90	+1.1
5,900,900	-		Psyr_4974	0.90	-0.7
5,900,900	-		Psyr_4974	0.90	-2.7
5,900,977	+				+1.5
5,900,977	+				-3.1
5,900,977	+				+1.6
5,900,978	-				+0.5
5,900,978	-				+0.0
5,900,978	-				+0.8
5,900,978	-				+1.0
5,900,978	-				+1.0
5,900,978	-				+0.3
5,901,020	+				-0.6
5,901,021	-				-0.9
5,901,021	-				+2.1
5,901,044	+				+1.6
5,901,158	+				-2.8
5,901,158	+				+2.9
5,901,159	-				+0.3
5,901,159	-				+1.1
5,901,254	+				-2.7
5,901,255	-				-0.1
5,901,255	-				+0.5
5,901,320	+				-3.7
5,901,320	+				+0.3
5,901,320	+				+0.6
5,901,321	-				+1.0
5,901,321	-				-0.9
5,901,332	+				-0.8
5,901,332	+				-2.9
5,901,340	-				+6.9
5,901,348	+				-0.5
5,901,397	-				+2.3
5,901,433	+		Psyr_4975	0.14	-0.4
5,901,437	+		Psyr_4975	0.14	-2.4
5,901,437	+		Psyr_4975	0.14	+0.2
5,901,438	-		Psyr_4975	0.14	+0.2
5,901,438	-		Psyr_4975	0.14	-1.0
5,901,476	+		Psyr_4975	0.20	-1.5
5,901,476	+		Psyr_4975	0.20	+2.4
5,901,476	+		Psyr_4975	0.20	-2.3
5,901,477	-		Psyr_4975	0.20	-2.1
5,901,478	+		Psyr_4975	0.20	+0.4
5,901,478	+		Psyr_4975	0.20	-1.9
5,901,478	+		Psyr_4975	0.20	-1.8
5,901,478	+		Psyr_4975	0.20	+0.9
5,901,479	-		Psyr_4975	0.20	-1.7
5,901,479	-		Psyr_4975	0.20	-1.2
5,901,479	-		Psyr_4975	0.20	-2.6
5,901,479	-		Psyr_4975	0.20	+0.3
5,901,479	-		Psyr_4975	0.20	-0.9
5,901,479	-		Psyr_4975	0.20	+0.2
5,901,479	-		Psyr_4975	0.20	-2.5
5,901,479	-		Psyr_4975	0.20	-3.0
5,901,483	-		Psyr_4975	0.21	+1.3
5,901,487	+		Psyr_4975	0.21	-0.6
5,901,488	-		Psyr_4975	0.21	+0.1
5,901,502	+		Psyr_4975	0.23	-0.4
5,901,503	-		Psyr_4975	0.23	+1.5
5,901,511	+		Psyr_4975	0.25	+1.9
5,901,511	+		Psyr_4975	0.25	-0.9
5,901,511	+		Psyr_4975	0.25	+2.3
5,901,511	+		Psyr_4975	0.25	-3.8
5,901,511	+		Psyr_4975	0.25	-0.0
5,901,512	-		Psyr_4975	0.25	+0.4
5,901,512	-		Psyr_4975	0.25	+0.7
5,901,512	-		Psyr_4975	0.25	-2.6
5,901,512	-		Psyr_4975	0.25	-1.9
5,901,512	-		Psyr_4975	0.25	-1.0
5,901,512	-		Psyr_4975	0.25	+0.0
5,901,512	-		Psyr_4975	0.25	-0.2
5,901,512	-		Psyr_4975	0.25	-1.4
5,901,514	-		Psyr_4975	0.25	+2.0
5,901,525	+		Psyr_4975	0.27	-2.2
5,901,564	+		Psyr_4975	0.32	-0.1
5,901,569	+		Psyr_4975	0.33	+2.6
5,901,569	+		Psyr_4975	0.33	-2.5
5,901,569	+		Psyr_4975	0.33	+1.3
5,901,569	+		Psyr_4975	0.33	-0.6
5,901,570	-		Psyr_4975	0.33	-2.9
5,901,574	+		Psyr_4975	0.33	-0.9
5,901,575	-		Psyr_4975	0.33	+2.1
5,901,575	-		Psyr_4975	0.33	-0.6
5,901,624	+		Psyr_4975	0.40	+0.1
5,901,648	+		Psyr_4975	0.44	-0.4
5,901,649	-		Psyr_4975	0.44	+0.0
5,901,649	-		Psyr_4975	0.44	-0.2
5,901,650	+		Psyr_4975	0.44	-1.2
5,901,662	-		Psyr_4975	0.46	-2.3
5,901,662	-		Psyr_4975	0.46	-1.4
5,901,738	+		Psyr_4975	0.56	-1.2
5,901,763	+		Psyr_4975	0.60	+0.9
5,901,763	+		Psyr_4975	0.60	-2.0
5,901,764	-		Psyr_4975	0.60	-0.1
5,901,766	-		Psyr_4975	0.60	-1.8
5,901,845	+		Psyr_4975	0.71	+2.0
5,901,846	-		Psyr_4975	0.71	-0.8
5,901,846	-		Psyr_4975	0.71	-0.6
5,901,846	-		Psyr_4975	0.71	+0.7
5,901,864	+		Psyr_4975	0.74	+1.4
5,901,884	+		Psyr_4975	0.76	-0.1
5,901,885	-		Psyr_4975	0.77	-2.6
5,901,885	-		Psyr_4975	0.77	-0.2
5,901,892	+		Psyr_4975	0.78	-0.5
5,901,892	+		Psyr_4975	0.78	+0.5
5,901,892	+		Psyr_4975	0.78	+1.5
5,901,892	+		Psyr_4975	0.78	-0.3
5,901,893	-		Psyr_4975	0.78	+0.8
5,901,893	-		Psyr_4975	0.78	-1.0
5,901,893	-		Psyr_4975	0.78	-0.4
5,901,945	+		Psyr_4975	0.85	-1.1
5,901,945	+		Psyr_4975	0.85	+1.5
5,901,945	+		Psyr_4975	0.85	-1.0
5,901,945	+		Psyr_4975	0.85	+1.1
5,902,051	+				-2.6
5,902,051	+				-2.1
5,902,077	+				+1.0
5,902,077	+				+1.0
5,902,077	+				-2.1
5,902,077	+				-1.1
5,902,078	-				-1.3
5,902,078	-				-2.7
5,902,078	-				-0.5
5,902,078	-				-0.2
5,902,078	-				-3.4
5,902,078	-				+0.6
5,902,078	-				-0.2
5,902,078	-				+2.4
5,902,078	-				-2.0
5,902,078	-				-0.6
5,902,078	-				-2.3
5,902,078	-				-2.7
5,902,078	-				+0.1
5,902,078	-				+1.3
5,902,087	+				+0.4
5,902,087	+				-3.3
5,902,087	+				+0.9
5,902,087	+				-0.3
5,902,087	+				+0.5
5,902,087	+				+0.8
5,902,087	+				-1.3
5,902,088	-				-2.2
5,902,088	-				-1.1
5,902,088	-				-0.4
5,902,091	+				-0.0
5,902,140	+				-0.6
5,902,140	+				-0.6
5,902,140	+				+1.2
5,902,140	+				+0.4
5,902,140	+				-3.4
5,902,140	+				+0.9
5,902,141	-				+0.3
5,902,141	-				-2.3
5,902,141	-				-0.2
5,902,141	-				+0.4
5,902,141	-				+0.1
5,902,141	-				+2.0
5,902,185	-		Psyr_4976	0.12	-0.7
5,902,185	-		Psyr_4976	0.12	+1.0
5,902,188	+		Psyr_4976	0.13	+1.9
5,902,189	-		Psyr_4976	0.13	-0.3