Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4826

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,723,317	-		Psyr_4825	0.43	+1.7
5,723,317	-		Psyr_4825	0.43	-0.4
5,723,518	-		Psyr_4825	0.58	+0.4
5,723,518	-		Psyr_4825	0.58	-2.6
5,723,741	+		Psyr_4825	0.75	-1.3
5,723,742	-		Psyr_4825	0.75	-1.9
5,723,760	+		Psyr_4825	0.77	-0.1
5,723,760	+		Psyr_4825	0.77	+0.9
5,723,760	+		Psyr_4825	0.77	-2.0
5,723,760	+		Psyr_4825	0.77	-0.1
5,723,760	+		Psyr_4825	0.77	-2.9
5,723,760	+		Psyr_4825	0.77	-1.7
5,723,761	-		Psyr_4825	0.77	-0.1
5,723,761	-		Psyr_4825	0.77	-0.2
5,723,761	-		Psyr_4825	0.77	+0.5
5,723,761	-		Psyr_4825	0.77	-1.9
5,723,761	-		Psyr_4825	0.77	+0.3
5,723,761	-		Psyr_4825	0.77	-0.9
5,723,761	-		Psyr_4825	0.77	-1.6
5,723,761	-		Psyr_4825	0.77	-1.1
5,723,761	-		Psyr_4825	0.77	-0.9
5,723,791	+		Psyr_4825	0.79	+1.9
5,723,792	-		Psyr_4825	0.79	+0.0
5,724,070	+				-3.0
5,724,070	+				+1.1
5,724,070	+				-1.9
5,724,071	-				-0.6
5,724,071	-				+0.1
5,724,082	+				-0.5
5,724,082	+				-2.8
5,724,082	+				-0.5
5,724,136	+				+0.7
5,724,172	+				-0.6
5,724,172	+				-1.2
5,724,172	+				-2.1
5,724,172	+				-3.3
5,724,172	+				-3.4
5,724,172	+				+1.3
5,724,172	+				+4.5
5,724,172	+				-1.0
5,724,173	-				+2.0
5,724,173	-				-1.8
5,724,173	-				-3.6
5,724,173	-				+0.6
5,724,173	-				+0.7
5,724,173	-				+1.2
5,724,203	-				-1.5
5,724,256	+				+0.6
5,724,257	-				-1.9
5,724,257	-				-0.2
5,724,332	-		Psyr_4826	0.10	-0.2
5,724,332	-		Psyr_4826	0.10	-0.1
5,724,355	+		Psyr_4826	0.11	-0.5
5,724,355	+		Psyr_4826	0.11	-3.4
5,724,355	+		Psyr_4826	0.11	-3.2
5,724,403	+		Psyr_4826	0.13	+0.1
5,724,403	+		Psyr_4826	0.13	+1.3
5,724,404	-		Psyr_4826	0.13	+1.2
5,724,418	+		Psyr_4826	0.14	-3.3
5,724,418	+		Psyr_4826	0.14	+0.1
5,724,418	+		Psyr_4826	0.14	+0.9
5,724,418	+		Psyr_4826	0.14	-3.2
5,724,419	-		Psyr_4826	0.14	+0.1
5,724,419	-		Psyr_4826	0.14	-0.7
5,724,520	+		Psyr_4826	0.18	-2.0
5,724,521	-		Psyr_4826	0.18	-1.0
5,724,661	+		Psyr_4826	0.25	-0.1
5,724,661	+		Psyr_4826	0.25	+0.1
5,724,661	+		Psyr_4826	0.25	-0.2
5,724,661	+		Psyr_4826	0.25	-1.4
5,724,661	+		Psyr_4826	0.25	-0.7
5,724,662	-		Psyr_4826	0.25	+1.3
5,724,662	-		Psyr_4826	0.25	+0.5
5,724,662	-		Psyr_4826	0.25	+0.6
5,724,662	-		Psyr_4826	0.25	-1.0
5,724,662	-		Psyr_4826	0.25	+0.3
5,724,662	-		Psyr_4826	0.25	+2.4
5,724,670	+		Psyr_4826	0.25	+1.9
5,724,670	+		Psyr_4826	0.25	+1.1
5,724,671	-		Psyr_4826	0.25	-0.4
5,724,808	+		Psyr_4826	0.31	+0.5
5,724,808	+		Psyr_4826	0.31	-0.3
5,724,808	+		Psyr_4826	0.31	-3.0
5,724,808	+		Psyr_4826	0.31	-2.5
5,724,835	+		Psyr_4826	0.32	+1.3
5,724,836	-		Psyr_4826	0.32	-0.5
5,724,836	-		Psyr_4826	0.32	-1.5
5,724,844	+		Psyr_4826	0.33	+2.4
5,724,844	+		Psyr_4826	0.33	-2.4
5,724,844	+		Psyr_4826	0.33	-0.7
5,724,844	+		Psyr_4826	0.33	-3.1
5,724,844	+		Psyr_4826	0.33	+0.0
5,724,844	+		Psyr_4826	0.33	+1.4
5,724,844	+		Psyr_4826	0.33	-3.1
5,724,844	+		Psyr_4826	0.33	+0.6
5,724,844	+		Psyr_4826	0.33	+0.5
5,724,844	+		Psyr_4826	0.33	-1.6
5,724,845	-		Psyr_4826	0.33	+3.1
5,724,845	-		Psyr_4826	0.33	-1.0
5,724,845	-		Psyr_4826	0.33	-2.6
5,724,845	-		Psyr_4826	0.33	-0.6
5,724,845	-		Psyr_4826	0.33	-1.7
5,724,845	-		Psyr_4826	0.33	-2.4
5,724,845	-		Psyr_4826	0.33	-2.6
5,724,845	-		Psyr_4826	0.33	-0.9
5,724,845	-		Psyr_4826	0.33	+1.1
5,724,845	-		Psyr_4826	0.33	-1.3
5,724,845	-		Psyr_4826	0.33	+0.2
5,724,845	-		Psyr_4826	0.33	+1.2
5,724,845	-		Psyr_4826	0.33	-2.0
5,724,845	-		Psyr_4826	0.33	+1.1
5,724,845	-		Psyr_4826	0.33	+1.5
5,724,845	-		Psyr_4826	0.33	+0.2
5,724,845	-		Psyr_4826	0.33	-0.3
5,724,845	-		Psyr_4826	0.33	+0.8
5,724,985	+		Psyr_4826	0.39	-3.2
5,724,985	+		Psyr_4826	0.39	+0.5
5,724,986	-		Psyr_4826	0.39	-1.8
5,724,986	-		Psyr_4826	0.39	+2.7
5,724,986	-		Psyr_4826	0.39	+0.9
5,724,986	-		Psyr_4826	0.39	+1.5
5,725,072	+		Psyr_4826	0.43	-1.7
5,725,072	+		Psyr_4826	0.43	-3.6
5,725,093	+		Psyr_4826	0.44	-0.3
5,725,094	-		Psyr_4826	0.44	+0.5
5,725,094	-		Psyr_4826	0.44	+1.5
5,725,094	-		Psyr_4826	0.44	+0.8
5,725,094	-		Psyr_4826	0.44	+0.6
5,725,144	+		Psyr_4826	0.46	-0.6
5,725,144	+		Psyr_4826	0.46	-3.1
5,725,144	+		Psyr_4826	0.46	-0.4
5,725,144	+		Psyr_4826	0.46	-2.5
5,725,144	+		Psyr_4826	0.46	+1.0
5,725,145	-		Psyr_4826	0.46	+1.7
5,725,171	+		Psyr_4826	0.47	-1.1
5,725,171	+		Psyr_4826	0.47	-0.6
5,725,171	+		Psyr_4826	0.47	-1.9
5,725,171	+		Psyr_4826	0.47	-0.7
5,725,171	+		Psyr_4826	0.47	+1.2
5,725,171	+		Psyr_4826	0.47	+0.2
5,725,171	+		Psyr_4826	0.47	+1.4
5,725,172	-		Psyr_4826	0.47	-2.7
5,725,172	-		Psyr_4826	0.47	+0.0
5,725,172	-		Psyr_4826	0.47	-1.7
5,725,172	-		Psyr_4826	0.47	-0.0
5,725,366	+		Psyr_4826	0.56	+0.8
5,725,366	+		Psyr_4826	0.56	+0.4
5,725,366	+		Psyr_4826	0.56	+2.4
5,725,367	-		Psyr_4826	0.56	+0.0
5,725,367	-		Psyr_4826	0.56	+0.3
5,725,471	-		Psyr_4826	0.60	-1.7
5,725,552	+		Psyr_4826	0.64	-1.9
5,725,552	+		Psyr_4826	0.64	+1.1
5,725,552	+		Psyr_4826	0.64	+0.0
5,725,553	-		Psyr_4826	0.64	+0.2
5,725,553	-		Psyr_4826	0.64	-0.6
5,725,553	-		Psyr_4826	0.64	+1.0
5,725,553	-		Psyr_4826	0.64	-1.2
5,725,553	-		Psyr_4826	0.64	+0.5
5,725,627	+		Psyr_4826	0.67	+0.5
5,725,675	+		Psyr_4826	0.69	+1.3
5,725,675	+		Psyr_4826	0.69	-4.0
5,725,675	+		Psyr_4826	0.69	+1.3
5,725,675	+		Psyr_4826	0.69	-1.7
5,725,676	-		Psyr_4826	0.69	-0.9
5,725,676	-		Psyr_4826	0.69	-1.9
5,725,676	-		Psyr_4826	0.69	-0.7
5,725,676	-		Psyr_4826	0.69	-1.6
5,725,676	-		Psyr_4826	0.69	-0.2
5,725,676	-		Psyr_4826	0.69	-1.3
5,725,676	-		Psyr_4826	0.69	-0.6
5,725,768	+		Psyr_4826	0.73	+1.0
5,725,769	-		Psyr_4826	0.73	-3.0
5,725,771	+		Psyr_4826	0.73	-1.6
5,725,771	+		Psyr_4826	0.73	+1.4
5,725,771	+		Psyr_4826	0.73	-0.5
5,725,771	+		Psyr_4826	0.73	-3.7
5,725,772	-		Psyr_4826	0.74	-0.1
5,725,772	-		Psyr_4826	0.74	-0.5
5,725,786	+		Psyr_4826	0.74	+0.2
5,725,786	+		Psyr_4826	0.74	+0.6
5,725,786	+		Psyr_4826	0.74	+0.4
5,725,786	+		Psyr_4826	0.74	+0.1
5,725,787	-		Psyr_4826	0.74	+1.2
5,725,787	-		Psyr_4826	0.74	+2.0
5,725,787	-		Psyr_4826	0.74	-1.1
5,725,787	-		Psyr_4826	0.74	-1.6
5,725,881	+		Psyr_4826	0.78	+0.9
5,725,882	-		Psyr_4826	0.78	+0.4
5,725,882	-		Psyr_4826	0.78	+0.5
5,725,882	-		Psyr_4826	0.78	+0.4
5,725,905	+		Psyr_4826	0.79	-3.8
5,725,905	+		Psyr_4826	0.79	-0.5
5,725,905	+		Psyr_4826	0.79	-3.7
5,725,906	-		Psyr_4826	0.79	+1.6
5,725,936	+		Psyr_4826	0.81	+0.7
5,725,936	+		Psyr_4826	0.81	+1.2
5,725,936	+		Psyr_4826	0.81	+0.4
5,725,936	+		Psyr_4826	0.81	+0.4
5,725,936	+		Psyr_4826	0.81	-1.5
5,725,937	-		Psyr_4826	0.81	+0.2
5,725,937	-		Psyr_4826	0.81	+1.7
5,725,937	-		Psyr_4826	0.81	-1.6
5,726,382	+				-1.7
5,726,391	+				-2.8
5,726,391	+				+1.0
5,726,392	-				+0.9
5,726,392	-				+2.2
5,726,392	-				-1.7
5,726,392	-				+2.2
5,726,392	-				+2.6
5,726,441	+				-0.1
5,726,442	-				+2.1
5,726,499	+				-2.8
5,727,036	+				+0.6
5,727,036	+				+0.6
5,727,036	+				-1.1
5,727,321	+				-1.0
5,727,321	+				+1.3