Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4776

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,653,085	+		Psyr_4775	0.38	+3.2
5,653,085	+		Psyr_4775	0.38	-0.6
5,653,085	+		Psyr_4775	0.38	-2.8
5,653,085	+		Psyr_4775	0.38	+0.8
5,653,085	+		Psyr_4775	0.38	-2.8
5,653,086	-		Psyr_4775	0.38	+1.0
5,653,086	-		Psyr_4775	0.38	+1.1
5,653,086	-		Psyr_4775	0.38	-1.9
5,653,268	+		Psyr_4775	0.54	+0.1
5,653,268	+		Psyr_4775	0.54	-1.1
5,653,268	+		Psyr_4775	0.54	+2.5
5,653,268	+		Psyr_4775	0.54	+1.4
5,653,269	-		Psyr_4775	0.54	-1.1
5,653,269	-		Psyr_4775	0.54	-1.1
5,653,269	-		Psyr_4775	0.54	+1.3
5,653,334	+		Psyr_4775	0.60	-0.6
5,653,334	+		Psyr_4775	0.60	-2.4
5,653,335	-		Psyr_4775	0.60	-3.0
5,653,388	+		Psyr_4775	0.65	+2.9
5,653,388	+		Psyr_4775	0.65	-0.1
5,653,388	+		Psyr_4775	0.65	-3.3
5,653,389	-		Psyr_4775	0.65	+1.6
5,653,445	-		Psyr_4775	0.70	+0.4
5,653,484	+		Psyr_4775	0.74	-2.4
5,653,484	+		Psyr_4775	0.74	-2.4
5,653,484	+		Psyr_4775	0.74	+1.3
5,653,485	-		Psyr_4775	0.74	-1.6
5,653,485	-		Psyr_4775	0.74	-3.2
5,653,485	-		Psyr_4775	0.74	-0.4
5,653,536	-		Psyr_4775	0.79	-0.6
5,653,565	+		Psyr_4775	0.81	+1.0
5,653,565	+		Psyr_4775	0.81	-3.7
5,653,565	+		Psyr_4775	0.81	+1.8
5,653,565	+		Psyr_4775	0.81	-0.7
5,653,566	-		Psyr_4775	0.81	+1.3
5,653,566	-		Psyr_4775	0.81	-2.4
5,653,566	-		Psyr_4775	0.81	+2.0
5,653,708	+				+2.9
5,653,708	+				-1.6
5,653,708	+				+1.9
5,653,709	-				-2.7
5,653,709	-				-1.7
5,653,709	-				-0.2
5,653,770	+				+0.5
5,653,770	+				-1.3
5,653,771	-				-3.5
5,653,771	-				+0.9
5,653,771	-				-0.1
5,653,771	-				+0.7
5,653,771	-				+0.4
5,653,771	-				+0.3
5,653,840	+				+1.2
5,653,840	+				+4.3
5,653,840	+				+1.7
5,653,840	+				-0.6
5,653,840	+				-0.0
5,653,840	+				-1.3
5,653,841	-				-2.2
5,653,844	+				-0.5
5,653,844	+				-0.6
5,653,845	-				-1.6
5,653,845	-				+2.3
5,653,845	-				-0.1
5,653,861	+				-0.8
5,653,861	+				-1.5
5,653,861	+				-3.0
5,653,861	+				-1.1
5,653,861	+				+0.9
5,653,862	-				+1.7
5,653,862	-				-0.2
5,653,862	-				-0.5
5,653,862	-				-0.3
5,653,862	-				+0.2
5,653,862	-				-1.7
5,653,865	+				+1.9
5,653,933	+				-3.1
5,653,978	+				-2.4
5,653,978	+				+1.4
5,653,979	-				-2.3
5,653,979	-				-1.7
5,653,979	-				-0.5
5,653,997	+				-3.5
5,653,997	+				+2.6
5,653,997	+				+0.6
5,653,998	-				+0.8
5,653,998	-				+1.1
5,653,998	-				-3.1
5,653,998	-				+0.6
5,653,998	-				+2.9
5,653,998	-				-2.2
5,654,074	+				+1.2
5,654,075	-				-1.8
5,654,075	-				+3.0
5,654,171	-				+1.3
5,654,191	+				+0.2
5,654,191	+				+1.7
5,654,290	+		Psyr_4776	0.16	+1.1
5,654,290	+		Psyr_4776	0.16	-0.3
5,654,291	-		Psyr_4776	0.16	-2.7
5,654,291	-		Psyr_4776	0.16	+2.7
5,654,291	-		Psyr_4776	0.16	+1.2
5,654,452	+		Psyr_4776	0.29	+2.2
5,654,452	+		Psyr_4776	0.29	+0.3
5,654,452	+		Psyr_4776	0.29	-1.4
5,654,452	+		Psyr_4776	0.29	+1.2
5,654,452	+		Psyr_4776	0.29	-1.7
5,654,452	+		Psyr_4776	0.29	+1.4
5,654,452	+		Psyr_4776	0.29	-0.1
5,654,452	+		Psyr_4776	0.29	+0.3
5,654,452	+		Psyr_4776	0.29	+1.4
5,654,452	+		Psyr_4776	0.29	+1.3
5,654,452	+		Psyr_4776	0.29	+1.0
5,654,452	+		Psyr_4776	0.29	-0.3
5,654,452	+		Psyr_4776	0.29	+1.0
5,654,453	-		Psyr_4776	0.29	-2.3
5,654,453	-		Psyr_4776	0.29	-3.0
5,654,453	-		Psyr_4776	0.29	-2.5
5,654,453	-		Psyr_4776	0.29	-0.6
5,654,453	-		Psyr_4776	0.29	+1.5
5,654,453	-		Psyr_4776	0.29	-1.6
5,654,476	+		Psyr_4776	0.30	+0.3
5,654,477	-		Psyr_4776	0.31	-2.1
5,654,477	-		Psyr_4776	0.31	+0.1
5,654,557	+		Psyr_4776	0.37	+2.0
5,654,623	+		Psyr_4776	0.42	-0.4
5,654,623	+		Psyr_4776	0.42	-1.0
5,654,623	+		Psyr_4776	0.42	+1.7
5,654,624	-		Psyr_4776	0.42	+0.6
5,654,624	-		Psyr_4776	0.42	+0.0
5,654,624	-		Psyr_4776	0.42	-2.2
5,654,624	-		Psyr_4776	0.42	+1.1
5,654,624	-		Psyr_4776	0.42	-0.2
5,654,624	-		Psyr_4776	0.42	+1.7
5,654,635	+		Psyr_4776	0.43	+0.3
5,654,635	+		Psyr_4776	0.43	+3.6
5,654,636	-		Psyr_4776	0.43	+2.6
5,654,896	-		Psyr_4776	0.63	-0.7
5,654,976	+		Psyr_4776	0.69	+0.8
5,655,159	+		Psyr_4776	0.83	+0.7
5,655,160	-		Psyr_4776	0.83	+0.4
5,655,268	+				-0.8
5,655,268	+				+1.5
5,655,268	+				-0.7
5,655,269	-				-1.4
5,655,269	-				+0.5
5,655,269	-				-1.2
5,655,302	-				+0.3
5,655,302	-				+1.3
5,655,347	-				+0.2
5,655,347	-				+2.6
5,655,400	-				-0.7
5,655,448	-				-2.7
5,655,448	-				-0.1
5,655,495	+				-0.4
5,655,495	+				+1.0
5,655,495	+				-1.7
5,655,495	+				-3.5
5,655,495	+				-2.4
5,655,496	-				+0.7
5,655,496	-				-0.0
5,655,496	-				+0.2
5,655,496	-				-2.6
5,655,496	-				+0.9
5,655,496	-				+1.4
5,655,587	+				+0.9
5,655,588	-				-0.7
5,655,628	+				-1.9
5,655,628	+				+1.0
5,655,628	+				+0.6
5,655,629	-				-4.1
5,655,629	-				+1.9
5,655,629	-				-1.5
5,655,630	+				+0.6
5,655,630	+				+1.0
5,655,630	+				-2.6
5,655,630	+				+0.3
5,655,631	-				+0.3
5,655,631	-				-0.1
5,655,631	-				+0.5
5,655,631	-				+1.2
5,655,631	-				+1.3
5,655,631	-				+0.2
5,655,631	-				-2.1
5,655,631	-				+1.3
5,655,631	-				-0.2
5,655,631	-				-0.6
5,655,631	-				-0.7
5,655,643	+				-2.5
5,655,643	+				+2.1
5,655,643	+				-2.4
5,655,664	+				-0.9
5,655,664	+				-2.2
5,655,664	+				-1.1
5,655,664	+				-0.8
5,655,665	-				-0.6
5,655,732	+				-0.7
5,655,732	+				+1.0
5,655,732	+				-2.8
5,655,732	+				-2.5
5,655,732	+				-3.2
5,655,732	+				+1.5
5,655,732	+				-3.5
5,655,732	+				-1.5
5,655,732	+				+0.3
5,655,732	+				-1.5
5,655,732	+				-0.8
5,655,732	+				+1.4
5,655,732	+				-2.5
5,655,732	+				+0.6
5,655,732	+				+0.1
5,655,732	+				-1.8
5,655,732	+				+2.5
5,655,732	+				-2.9
5,655,732	+				+0.4
5,655,732	+				-0.7
5,655,732	+				-2.0
5,655,732	+				+1.6
5,655,733	-				+0.8
5,655,733	-				-0.7
5,655,733	-				+0.6
5,655,733	-				-2.7
5,655,733	-				+0.5
5,655,733	-				-1.2
5,655,733	-				+0.8
5,655,733	-				-0.1
5,655,733	-				-3.0
5,655,733	-				-0.7
5,655,733	-				+0.2
5,655,733	-				-2.3
5,655,733	-				-3.1
5,655,733	-				-2.2
5,655,733	-				-2.2
5,655,733	-				+2.1
5,655,733	-				-0.5
5,655,733	-				-1.9
5,655,736	+				+2.2
5,655,736	+				-2.9
5,655,737	-				-3.0
5,655,737	-				+0.4
5,655,744	-				+1.8
5,655,744	-				-1.5
5,655,784	-				-0.3
5,655,800	+				+0.3
5,655,800	+				-0.4
5,655,800	+				+0.4
5,655,800	+				+1.5
5,655,801	-				+1.0
5,655,801	-				+0.0
5,655,801	-				-1.3
5,655,801	-				+0.1
5,655,802	+		Psyr_4777	0.10	-0.0
5,655,802	+		Psyr_4777	0.10	+0.9
5,655,802	+		Psyr_4777	0.10	-1.2
5,655,802	+		Psyr_4777	0.10	-3.1
5,655,802	+		Psyr_4777	0.10	+0.8
5,655,802	+		Psyr_4777	0.10	-0.6
5,655,803	-		Psyr_4777	0.10	-2.0
5,655,803	-		Psyr_4777	0.10	+0.4
5,655,933	-		Psyr_4777	0.15	-1.7
5,655,959	+		Psyr_4777	0.17	-2.4
5,655,960	-		Psyr_4777	0.17	-0.8
5,655,960	-		Psyr_4777	0.17	+0.5
5,656,026	+		Psyr_4777	0.19	-0.0
5,656,027	-		Psyr_4777	0.19	-2.1
5,656,027	-		Psyr_4777	0.19	+2.0
5,656,061	+		Psyr_4777	0.21	+1.0
5,656,088	-		Psyr_4777	0.22	-2.3
5,656,113	-		Psyr_4777	0.23	-3.1
5,656,163	+		Psyr_4777	0.25	-2.5
5,656,163	+		Psyr_4777	0.25	-0.2
5,656,163	+		Psyr_4777	0.25	-1.5
5,656,163	+		Psyr_4777	0.25	+1.2
5,656,164	-		Psyr_4777	0.25	+0.7
5,656,164	-		Psyr_4777	0.25	+0.6
5,656,164	-		Psyr_4777	0.25	+1.4
5,656,232	+		Psyr_4777	0.28	-3.0
5,656,232	+		Psyr_4777	0.28	+0.4
5,656,232	+		Psyr_4777	0.28	+1.1
5,656,232	+		Psyr_4777	0.28	+0.2
5,656,232	+		Psyr_4777	0.28	-0.5
5,656,233	-		Psyr_4777	0.28	-1.9
5,656,233	-		Psyr_4777	0.28	+0.6
5,656,233	-		Psyr_4777	0.28	+0.2
5,656,233	-		Psyr_4777	0.28	+0.4
5,656,233	-		Psyr_4777	0.28	-0.6
5,656,233	-		Psyr_4777	0.28	+0.6
5,656,233	-		Psyr_4777	0.28	+2.0
5,656,235	-		Psyr_4777	0.28	-2.6
5,656,256	+		Psyr_4777	0.29	-1.6
5,656,256	+		Psyr_4777	0.29	+1.1
5,656,277	+		Psyr_4777	0.30	-0.7
5,656,278	-		Psyr_4777	0.30	-1.2
5,656,280	+		Psyr_4777	0.30	-0.9
5,656,280	+		Psyr_4777	0.30	-0.9
5,656,280	+		Psyr_4777	0.30	-3.1
5,656,280	+		Psyr_4777	0.30	-3.0
5,656,280	+		Psyr_4777	0.30	+0.9
5,656,280	+		Psyr_4777	0.30	+1.1
5,656,280	+		Psyr_4777	0.30	-3.0
5,656,280	+		Psyr_4777	0.30	-2.8
5,656,281	-		Psyr_4777	0.30	+2.0
5,656,281	-		Psyr_4777	0.30	+1.6
5,656,281	-		Psyr_4777	0.30	-0.1
5,656,281	-		Psyr_4777	0.30	+2.4
5,656,281	-		Psyr_4777	0.30	+1.3
5,656,281	-		Psyr_4777	0.30	+0.4
5,656,281	-		Psyr_4777	0.30	-3.2
5,656,281	-		Psyr_4777	0.30	-1.3
5,656,367	+		Psyr_4777	0.33	+2.1
5,656,367	+		Psyr_4777	0.33	+0.9
5,656,368	-		Psyr_4777	0.33	+0.5
5,656,371	-		Psyr_4777	0.34	+2.0