Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4385

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,241,886	+		Psyr_4384	0.66	-3.2
5,241,886	+		Psyr_4384	0.66	+1.0
5,241,886	+		Psyr_4384	0.66	-3.0
5,241,887	-		Psyr_4384	0.66	-1.2
5,242,157	+		Psyr_4384	0.86	+0.2
5,242,157	+		Psyr_4384	0.86	-0.8
5,242,157	+		Psyr_4384	0.86	+1.3
5,242,157	+		Psyr_4384	0.86	+0.2
5,242,158	-		Psyr_4384	0.86	+0.7
5,242,158	-		Psyr_4384	0.86	-2.1
5,242,158	-		Psyr_4384	0.86	-2.4
5,242,159	+		Psyr_4384	0.86	-0.5
5,242,159	+		Psyr_4384	0.86	+1.7
5,242,159	+		Psyr_4384	0.86	+0.9
5,242,159	+		Psyr_4384	0.86	+1.7
5,242,160	-		Psyr_4384	0.87	-1.1
5,242,160	-		Psyr_4384	0.87	-0.9
5,242,160	-		Psyr_4384	0.87	-2.1
5,242,257	-				-1.5
5,242,334	+				+2.4
5,242,334	+				-2.9
5,242,334	+				-2.3
5,242,334	+				+1.0
5,242,334	+				+0.5
5,242,334	+				-2.1
5,242,335	-				+2.3
5,242,335	-				-0.2
5,242,335	-				+2.2
5,242,335	-				+0.8
5,242,335	-				+2.6
5,242,367	+				+2.8
5,242,367	+				+1.7
5,242,368	-				-2.4
5,242,368	-				+1.2
5,242,403	+				+0.6
5,242,444	+				+0.9
5,242,520	+				+1.7
5,242,520	+				+0.7
5,242,520	+				-2.6
5,242,521	-				-3.4
5,242,521	-				+1.8
5,242,521	-				-0.2
5,242,530	-				-0.1
5,242,545	+				+1.9
5,242,545	+				-2.6
5,242,555	+				+0.8
5,242,555	+				-0.8
5,242,555	+				-0.4
5,242,556	-				+1.2
5,242,556	-				-2.7
5,242,556	-				+1.5
5,242,573	+				+0.5
5,242,573	+				-1.2
5,242,573	+				+2.5
5,242,574	-				+0.0
5,242,574	-				+0.6
5,242,576	+				+1.5
5,242,576	+				+0.7
5,242,576	+				+1.0
5,242,576	+				+0.9
5,242,576	+				+1.6
5,242,576	+				-0.9
5,242,576	+				+0.9
5,242,576	+				+1.3
5,242,576	+				-0.9
5,242,576	+				-2.8
5,242,576	+				+0.2
5,242,576	+				-0.1
5,242,576	+				+1.3
5,242,576	+				+0.9
5,242,576	+				+2.4
5,242,576	+				-1.5
5,242,576	+				+0.2
5,242,576	+				-2.9
5,242,576	+				-1.0
5,242,576	+				+2.0
5,242,576	+				-2.7
5,242,576	+				-3.4
5,242,576	+				-1.9
5,242,576	+				+0.9
5,242,576	+				-0.9
5,242,576	+				-1.7
5,242,576	+				+1.5
5,242,576	+				-3.0
5,242,577	-				+1.5
5,242,577	-				+3.0
5,242,577	-				-3.5
5,242,577	-				-0.2
5,242,577	-				+0.6
5,242,577	-				+1.7
5,242,577	-				-2.7
5,242,577	-				-0.3
5,242,577	-				+2.5
5,242,577	-				+0.4
5,242,577	-				+1.0
5,242,577	-				+0.5
5,242,577	-				-3.1
5,242,577	-				+2.1
5,242,595	+				+0.7
5,242,595	+				+2.8
5,242,595	+				-3.1
5,242,595	+				-2.8
5,242,595	+				+1.1
5,242,595	+				+1.3
5,242,595	+				-3.2
5,242,595	+				+0.9
5,242,595	+				+0.2
5,242,595	+				-0.9
5,242,595	+				-1.0
5,242,595	+				-2.5
5,242,595	+				-0.8
5,242,596	-				+1.5
5,242,596	-				-1.5
5,242,596	-				-0.0
5,242,596	-				+3.7
5,242,596	-				-1.7
5,242,596	-				-1.6
5,242,596	-				+0.4
5,242,596	-				+0.3
5,242,596	-				+0.4
5,242,596	-				+0.7
5,242,596	-				+2.5
5,242,597	+				+0.8
5,242,597	+				-2.1
5,242,597	+				-0.6
5,242,597	+				-1.0
5,242,597	+				+1.9
5,242,597	+				-0.2
5,242,597	+				-2.2
5,242,597	+				-1.3
5,242,597	+				+0.7
5,242,597	+				-0.2
5,242,597	+				+0.1
5,242,597	+				+0.2
5,242,597	+				-2.3
5,242,597	+				+0.1
5,242,597	+				+2.1
5,242,597	+				-0.2
5,242,597	+				+1.7
5,242,597	+				-1.7
5,242,598	-				-2.9
5,242,598	-				-0.3
5,242,598	-				-1.2
5,242,598	-				-0.5
5,242,598	-				-1.5
5,242,598	-				-0.0
5,242,598	-				-1.7
5,242,598	-				-0.6
5,242,598	-				-0.0
5,242,598	-				-1.7
5,242,598	-				-2.9
5,242,598	-				-1.0
5,242,598	-				-2.7
5,242,598	-				+0.2
5,242,598	-				-0.2
5,242,599	+				+1.4
5,242,599	+				+1.8
5,242,600	-				+4.3
5,242,600	-				-4.1
5,242,600	-				+1.7
5,242,600	-				-0.5
5,242,600	-				-0.0
5,242,610	+				-0.6
5,242,614	+				-0.8
5,242,614	+				-0.0
5,242,642	-				-2.8
5,242,708	+				-1.5
5,242,708	+				+1.0
5,242,920	+				-1.5
5,242,920	+				-2.9
5,242,920	+				-2.1
5,242,921	-				-2.4
5,242,989	+				-0.2
5,242,990	-				+0.3
5,242,990	-				-1.6
5,243,081	+				+0.1
5,243,081	+				-0.7
5,243,082	-				+0.7
5,243,285	+		Psyr_4385	0.13	-0.0
5,243,286	-		Psyr_4385	0.13	+1.3
5,243,286	-		Psyr_4385	0.13	+3.2
5,243,286	-		Psyr_4385	0.13	+0.8
5,243,324	+		Psyr_4385	0.14	-3.0
5,243,324	+		Psyr_4385	0.14	+0.4
5,243,325	-		Psyr_4385	0.14	+1.5
5,243,325	-		Psyr_4385	0.14	+1.0
5,243,420	+		Psyr_4385	0.16	-2.9
5,243,420	+		Psyr_4385	0.16	+1.5
5,243,421	-		Psyr_4385	0.16	+2.0
5,243,450	+		Psyr_4385	0.17	-1.2
5,243,450	+		Psyr_4385	0.17	+1.0
5,243,450	+		Psyr_4385	0.17	+1.7
5,243,450	+		Psyr_4385	0.17	+1.2
5,243,450	+		Psyr_4385	0.17	+0.1
5,243,450	+		Psyr_4385	0.17	-0.8
5,243,451	-		Psyr_4385	0.17	+1.2
5,243,451	-		Psyr_4385	0.17	+1.8
5,243,451	-		Psyr_4385	0.17	+0.2
5,243,451	-		Psyr_4385	0.17	+0.6
5,243,451	-		Psyr_4385	0.17	+0.2
5,243,451	-		Psyr_4385	0.17	-0.8
5,243,451	-		Psyr_4385	0.17	-1.4
5,243,457	-		Psyr_4385	0.17	+1.0
5,243,588	+		Psyr_4385	0.19	+1.8
5,243,588	+		Psyr_4385	0.19	-1.1
5,243,588	+		Psyr_4385	0.19	-0.8
5,243,588	+		Psyr_4385	0.19	+0.4
5,243,588	+		Psyr_4385	0.19	-0.1
5,243,588	+		Psyr_4385	0.19	-0.4
5,243,588	+		Psyr_4385	0.19	-1.6
5,243,588	+		Psyr_4385	0.19	-0.8
5,243,589	-		Psyr_4385	0.19	+1.8
5,243,589	-		Psyr_4385	0.19	-2.4
5,243,589	-		Psyr_4385	0.19	-2.7
5,243,589	-		Psyr_4385	0.19	-0.5
5,243,589	-		Psyr_4385	0.19	-3.4
5,243,749	+		Psyr_4385	0.23	+1.0
5,243,957	+		Psyr_4385	0.27	+2.2
5,243,958	-		Psyr_4385	0.27	-2.4
5,244,044	+		Psyr_4385	0.29	-2.4
5,244,044	+		Psyr_4385	0.29	-0.2
5,244,185	-		Psyr_4385	0.31	+0.3
5,244,185	-		Psyr_4385	0.31	+1.1
5,244,203	+		Psyr_4385	0.32	+1.1
5,244,203	+		Psyr_4385	0.32	+1.5
5,244,203	+		Psyr_4385	0.32	+0.4
5,244,203	+		Psyr_4385	0.32	-0.4
5,244,203	+		Psyr_4385	0.32	+0.9
5,244,203	+		Psyr_4385	0.32	-2.4
5,244,204	-		Psyr_4385	0.32	-0.5
5,244,204	-		Psyr_4385	0.32	-0.6
5,244,204	-		Psyr_4385	0.32	-1.2
5,244,204	-		Psyr_4385	0.32	-3.0
5,244,204	-		Psyr_4385	0.32	+1.4
5,244,204	-		Psyr_4385	0.32	+1.3
5,244,204	-		Psyr_4385	0.32	+2.1
5,244,204	-		Psyr_4385	0.32	+0.3
5,244,339	+		Psyr_4385	0.35	+1.7
5,244,339	+		Psyr_4385	0.35	+3.4
5,244,339	+		Psyr_4385	0.35	-0.0
5,244,647	+		Psyr_4385	0.41	-0.1
5,244,647	+		Psyr_4385	0.41	-2.6
5,244,648	-		Psyr_4385	0.41	-3.1
5,244,648	-		Psyr_4385	0.41	-1.7
5,244,659	+		Psyr_4385	0.41	-1.8
5,244,660	-		Psyr_4385	0.41	-0.7
5,244,683	+		Psyr_4385	0.42	+3.6
5,244,921	-		Psyr_4385	0.46	+0.2
5,244,941	-		Psyr_4385	0.47	-0.3
5,244,977	+		Psyr_4385	0.47	+0.1
5,245,049	+		Psyr_4385	0.49	-0.0
5,245,049	+		Psyr_4385	0.49	-0.9
5,245,049	+		Psyr_4385	0.49	-3.0
5,245,049	+		Psyr_4385	0.49	+0.7
5,245,049	+		Psyr_4385	0.49	+1.8
5,245,050	-		Psyr_4385	0.49	-1.9
5,245,050	-		Psyr_4385	0.49	+0.5
5,245,050	-		Psyr_4385	0.49	+0.4
5,245,050	-		Psyr_4385	0.49	-2.3
5,245,091	+		Psyr_4385	0.50	-0.1
5,245,091	+		Psyr_4385	0.50	+0.1
5,245,091	+		Psyr_4385	0.50	+1.3
5,245,091	+		Psyr_4385	0.50	-0.7
5,245,091	+		Psyr_4385	0.50	-0.7
5,245,091	+		Psyr_4385	0.50	+0.4
5,245,091	+		Psyr_4385	0.50	-1.7
5,245,092	-		Psyr_4385	0.50	+0.6
5,245,092	-		Psyr_4385	0.50	-0.9
5,245,092	-		Psyr_4385	0.50	+0.2
5,245,092	-		Psyr_4385	0.50	-0.6
5,245,092	-		Psyr_4385	0.50	+2.1
5,245,092	-		Psyr_4385	0.50	+0.1
5,245,092	-		Psyr_4385	0.50	+0.1
5,245,092	-		Psyr_4385	0.50	+2.1
5,245,336	+		Psyr_4385	0.55	-1.5
5,245,337	-		Psyr_4385	0.55	+1.5
5,245,347	-		Psyr_4385	0.55	+1.7
5,245,415	+		Psyr_4385	0.56	+0.5
5,245,415	+		Psyr_4385	0.56	+1.0
5,245,415	+		Psyr_4385	0.56	-2.4
5,245,416	-		Psyr_4385	0.56	+0.7
5,245,416	-		Psyr_4385	0.56	+0.2
5,245,416	-		Psyr_4385	0.56	+6.4
5,245,416	-		Psyr_4385	0.56	+1.1
5,245,416	-		Psyr_4385	0.56	+4.6
5,245,416	-		Psyr_4385	0.56	+0.6
5,245,416	-		Psyr_4385	0.56	-0.8
5,245,416	-		Psyr_4385	0.56	+0.5
5,245,416	-		Psyr_4385	0.56	+0.1
5,245,645	+		Psyr_4385	0.61	+0.2
5,246,171	+		Psyr_4385	0.72	-0.6
5,246,217	-		Psyr_4385	0.72	-0.7
5,246,325	-		Psyr_4385	0.75	-1.7
5,246,325	-		Psyr_4385	0.75	+2.4
5,246,369	+		Psyr_4385	0.75	-2.2
5,246,384	+		Psyr_4385	0.76	-0.5
5,246,384	+		Psyr_4385	0.76	-1.3
5,246,384	+		Psyr_4385	0.76	-0.6
5,246,384	+		Psyr_4385	0.76	-0.0
5,246,384	+		Psyr_4385	0.76	-1.1
5,246,385	-		Psyr_4385	0.76	+1.8
5,246,385	-		Psyr_4385	0.76	-2.4
5,246,385	-		Psyr_4385	0.76	+1.8
5,246,385	-		Psyr_4385	0.76	-3.2
5,246,385	-		Psyr_4385	0.76	-2.7
5,246,474	+		Psyr_4385	0.78	+4.2
5,246,507	+		Psyr_4385	0.78	+1.8
5,246,508	-		Psyr_4385	0.78	+2.1
5,246,508	-		Psyr_4385	0.78	-1.0
5,246,527	+		Psyr_4385	0.79	-0.4
5,246,527	+		Psyr_4385	0.79	-1.1
5,246,528	-		Psyr_4385	0.79	+0.6
5,246,784	+		Psyr_4385	0.84	-0.2
5,246,785	-		Psyr_4385	0.84	-1.6
5,247,149	+				-0.6
5,247,149	+				+0.4
5,247,150	-				+1.4
5,247,411	-				+0.6
5,247,411	-				-0.1
5,247,458	+				-3.7
5,247,459	-				+2.7
5,247,459	-				+0.8
5,247,459	-				+0.7
5,247,612	+				+1.0
5,247,704	-				-2.7
5,247,759	+				-0.5
5,247,767	+				-1.3
5,247,901	-				+0.0
5,248,008	+		Psyr_4386	0.32	+0.5
5,248,008	+		Psyr_4386	0.32	+3.2
5,248,008	+		Psyr_4386	0.32	-0.1
5,248,008	+		Psyr_4386	0.32	-2.7
5,248,009	-		Psyr_4386	0.32	-0.1
5,248,009	-		Psyr_4386	0.32	+0.9
5,248,199	+				+0.2
5,248,199	+				-1.1
5,248,199	+				+1.1
5,248,199	+				+0.2
5,248,199	+				-1.6
5,248,199	+				-3.0
5,248,200	-				-2.9
5,248,200	-				+0.2
5,248,200	-				-3.0
5,248,207	+				-1.4
5,248,207	+				-0.9
5,248,207	+				+1.5
5,248,207	+				+3.5
5,248,207	+				+0.8
5,248,207	+				+3.0
5,248,207	+				-2.3
5,248,207	+				+1.5
5,248,207	+				-3.0
5,248,207	+				-1.5
5,248,207	+				+0.0
5,248,207	+				+1.3
5,248,207	+				+0.8
5,248,207	+				-1.0
5,248,207	+				-0.3
5,248,207	+				+0.8
5,248,207	+				+0.9
5,248,207	+				-1.4
5,248,207	+				+0.5
5,248,207	+				-0.3
5,248,207	+				+0.9
5,248,208	-				+0.8
5,248,208	-				+0.4
5,248,208	-				-0.7
5,248,208	-				+1.8
5,248,208	-				-0.3
5,248,208	-				+1.0
5,248,208	-				-2.2
5,248,208	-				-2.9
5,248,208	-				-0.5
5,248,208	-				-1.3
5,248,208	-				-0.5
5,248,208	-				+1.9
5,248,208	-				+0.2
5,248,208	-				-3.4
5,248,208	-				+2.4
5,248,208	-				-1.9
5,248,208	-				-0.2
5,248,208	-				-0.2
5,248,208	-				-0.5
5,248,208	-				+0.8
5,248,208	-				+0.7
5,248,208	-				+2.3
5,248,208	-				-2.9
5,248,208	-				-2.5
5,248,208	-				+0.4
5,248,208	-				-2.1
5,248,208	-				+1.6
5,248,208	-				-0.2
5,248,208	-				+2.0
5,248,208	-				+0.6
5,248,211	+				-1.5
5,248,211	+				+2.1
5,248,211	+				+2.2
5,248,211	+				+0.6
5,248,211	+				-3.1
5,248,211	+				-1.9
5,248,211	+				+1.7
5,248,211	+				+0.1
5,248,211	+				+2.7
5,248,211	+				+1.7
5,248,211	+				-0.1
5,248,211	+				-1.7
5,248,211	+				+2.6
5,248,211	+				-3.3
5,248,211	+				+1.9
5,248,211	+				+0.9
5,248,211	+				+2.6
5,248,211	+				-0.0
5,248,211	+				+3.5
5,248,211	+				-3.6
5,248,212	-				+2.2
5,248,212	-				-2.9
5,248,212	-				+0.2
5,248,212	-				-2.8
5,248,212	-				-0.2
5,248,212	-				+0.7
5,248,212	-				+2.6
5,248,212	-				-0.7
5,248,212	-				-1.7
5,248,212	-				-1.1
5,248,212	-				+0.7
5,248,212	-				+2.3
5,248,212	-				-2.9
5,248,212	-				+1.0
5,248,212	-				+1.6
5,248,212	-				+1.6
5,248,212	-				-0.5
5,248,212	-				+0.2
5,248,212	-				-3.7
5,248,212	-				+0.7
5,248,212	-				-1.5
5,248,212	-				+1.6
5,248,212	-				+1.2
5,248,288	+				+0.0
5,248,288	+				+1.7
5,248,493	+				+0.9
5,248,494	-				+0.8
5,248,494	-				+3.3
5,248,532	-				+0.1
5,248,534	+				+0.5
5,248,534	+				+2.0
5,248,535	-				-1.3
5,248,535	-				-0.0
5,248,535	-				+0.3
5,248,555	+		Psyr_4387	0.11	-2.5
5,248,556	-		Psyr_4387	0.11	+1.7
5,248,556	-		Psyr_4387	0.11	+0.0
5,248,573	+		Psyr_4387	0.11	-0.8
5,248,574	-		Psyr_4387	0.12	+0.9