Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4208

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,009,761	+		Psyr_4206	0.88	-2.9
5,009,761	+				+1.8
5,009,762	-		Psyr_4206	0.88	-0.5
5,009,762	-		Psyr_4206	0.88	-0.5
5,009,762	-		Psyr_4206	0.88	+2.4
5,009,762	-		Psyr_4206	0.88	-3.5
5,009,762	-		Psyr_4206	0.88	-1.2
5,009,762	-		Psyr_4206	0.88	-2.1
5,009,762	-		Psyr_4206	0.88	-1.1
5,009,764	+		Psyr_4206	0.89	+0.8
5,009,764	+		Psyr_4206	0.89	-1.2
5,009,765	-		Psyr_4206	0.89	-2.0
5,009,765	-		Psyr_4206	0.89	-1.5
5,009,786	+				-2.0
5,009,786	+				-1.2
5,009,786	+				-1.0
5,009,786	+				+0.3
5,009,786	+				+3.2
5,009,786	+				-1.2
5,009,786	+				-0.2
5,009,786	+				-1.3
5,009,786	+				-1.4
5,009,786	+				-2.1
5,009,786	+				-3.3
5,009,787	-				-3.1
5,009,787	-				-2.5
5,009,787	-				+0.3
5,009,787	-				-2.4
5,009,787	-				-1.5
5,009,787	-				-3.4
5,009,787	-				+0.8
5,009,787	-				-1.1
5,009,787	-				-0.6
5,009,787	-				+0.4
5,009,787	-				+0.2
5,009,787	-				+1.1
5,009,787	-				-1.2
5,009,787	-				+0.5
5,009,787	-				-2.2
5,009,787	-				-0.6
5,009,790	+				-0.6
5,009,791	-				-1.8
5,009,874	+				+2.8
5,009,875	-				-3.5
5,009,884	+				-0.7
5,009,997	+		Psyr_4207	0.22	+1.4
5,009,997	+		Psyr_4207	0.22	-2.9
5,009,998	-		Psyr_4207	0.22	+1.6
5,009,998	-		Psyr_4207	0.22	-2.6
5,009,998	-		Psyr_4207	0.22	-2.8
5,009,998	-		Psyr_4207	0.22	+0.1
5,010,026	+		Psyr_4207	0.29	-3.2
5,010,026	+		Psyr_4207	0.29	+0.5
5,010,026	+		Psyr_4207	0.29	+0.2
5,010,026	+		Psyr_4207	0.29	+1.3
5,010,026	+		Psyr_4207	0.29	-0.9
5,010,027	-		Psyr_4207	0.29	-2.6
5,010,027	-		Psyr_4207	0.29	+1.0
5,010,027	-		Psyr_4207	0.29	+0.9
5,010,027	-		Psyr_4207	0.29	-1.7
5,010,027	-		Psyr_4207	0.29	-3.2
5,010,027	-		Psyr_4207	0.29	-1.1
5,010,027	-		Psyr_4207	0.29	+1.7
5,010,027	-				+0.0
5,010,030	+		Psyr_4207	0.30	+0.9
5,010,218	+		Psyr_4207	0.73	-2.1
5,010,218	+		Psyr_4207	0.73	-0.5
5,010,299	+				-1.0
5,010,300	-				-2.6
5,010,300	-				+0.8
5,010,300	-				-2.2
5,010,338	+				+0.1
5,010,338	+				-1.6
5,010,374	-				-0.9
5,010,442	+				-2.2
5,010,443	-				+2.3
5,010,443	-				+0.2
5,010,446	-				+2.8
5,010,446	-				-0.8
5,010,476	+				-1.6
5,010,477	-				-1.9
5,010,519	+				-1.2
5,010,519	+				-2.4
5,010,520	-				+1.1
5,010,592	-				-1.4
5,010,597	+				+2.1
5,010,597	+				-1.2
5,010,598	-				+2.7
5,010,717	+				-0.5
5,010,718	-				-0.3
5,010,718	-				-1.1
5,010,718	-				-3.0
5,010,866	+				+1.6
5,010,867	-				-2.2
5,010,968	+		Psyr_4208	0.11	-0.8
5,010,968	+		Psyr_4208	0.11	+0.4
5,011,010	-		Psyr_4208	0.13	+0.5
5,011,139	+		Psyr_4208	0.18	+0.5
5,011,140	-		Psyr_4208	0.18	+0.4
5,011,140	-		Psyr_4208	0.18	+0.3
5,011,140	-		Psyr_4208	0.18	-0.5
5,011,269	-		Psyr_4208	0.24	-0.7
5,011,454	+		Psyr_4208	0.32	-0.7
5,011,454	+		Psyr_4208	0.32	+2.1
5,011,454	+		Psyr_4208	0.32	-0.7
5,011,454	+		Psyr_4208	0.32	+0.2
5,011,454	+		Psyr_4208	0.32	-2.3
5,011,454	+		Psyr_4208	0.32	-0.9
5,011,454	+		Psyr_4208	0.32	+1.4
5,011,455	-		Psyr_4208	0.32	-1.4
5,011,455	-		Psyr_4208	0.32	-0.4
5,011,455	-		Psyr_4208	0.32	+1.6
5,011,455	-		Psyr_4208	0.32	-2.7
5,012,215	+		Psyr_4208	0.66	+2.1
5,012,216	-		Psyr_4208	0.66	+0.3
5,012,216	-		Psyr_4208	0.66	-1.0
5,012,216	-		Psyr_4208	0.66	+2.0
5,012,216	-		Psyr_4208	0.66	+1.6
5,012,216	-		Psyr_4208	0.66	-0.3
5,012,338	+		Psyr_4208	0.71	-0.1
5,012,573	+		Psyr_4208	0.81	+1.7
5,012,573	+		Psyr_4208	0.81	-0.4
5,012,573	+		Psyr_4208	0.81	+0.5
5,012,573	+		Psyr_4208	0.81	-0.4
5,012,574	-		Psyr_4208	0.81	+0.7
5,012,574	-		Psyr_4208	0.81	-1.5
5,012,574	-		Psyr_4208	0.81	+2.8
5,012,574	-		Psyr_4208	0.81	-0.2
5,012,574	-		Psyr_4208	0.81	+0.9
5,012,574	-		Psyr_4208	0.81	+0.6
5,012,574	-		Psyr_4208	0.81	+2.2
5,012,646	+		Psyr_4208	0.85	+0.6
5,012,646	+		Psyr_4208	0.85	-2.8
5,012,646	+		Psyr_4208	0.85	+1.1
5,012,647	-		Psyr_4208	0.85	-1.6
5,012,647	-		Psyr_4208	0.85	-2.8
5,012,797	+				-3.3
5,012,903	+				-2.7
5,012,903	+				-1.1
5,012,903	+				-0.5
5,012,903	+				+1.0
5,012,904	-				+1.7
5,012,904	-				+1.1
5,012,904	-				+0.6
5,012,904	-				-1.2
5,012,904	-				+0.1
5,012,998	+				-2.0
5,012,998	+				-0.8
5,012,998	+				-1.7
5,012,998	+				+0.9
5,012,998	+				+0.9
5,012,998	+				+0.3
5,012,998	+				+0.8
5,012,998	+				+0.8
5,012,999	-				-1.4
5,012,999	-				+0.5
5,012,999	-				+1.6
5,012,999	-				-3.6
5,012,999	-				+0.3
5,012,999	-				+0.8
5,012,999	-				+0.2
5,012,999	-				+0.7
5,012,999	-				+0.4
5,013,078	-				+1.1
5,013,249	+		Psyr_4209	0.13	-2.7
5,013,259	+		Psyr_4209	0.14	-2.4
5,013,259	+		Psyr_4209	0.14	-0.2
5,013,259	+		Psyr_4209	0.14	-1.2
5,013,260	-		Psyr_4209	0.14	-2.9
5,013,260	-		Psyr_4209	0.14	-2.9
5,013,260	-		Psyr_4209	0.14	-1.2
5,013,260	-		Psyr_4209	0.14	-2.7
5,013,260	-		Psyr_4209	0.14	-3.8
5,013,260	-		Psyr_4209	0.14	-0.0
5,013,260	-		Psyr_4209	0.14	-2.2
5,013,260	-		Psyr_4209	0.14	+0.1
5,013,260	-		Psyr_4209	0.14	-2.7
5,013,260	-		Psyr_4209	0.14	+3.4
5,013,260	-		Psyr_4209	0.14	-1.7
5,013,569	-		Psyr_4209	0.38	-3.9
5,013,569	-		Psyr_4209	0.38	-2.8
5,013,569	-		Psyr_4209	0.38	+0.8
5,013,672	-		Psyr_4209	0.45	+2.2
5,013,723	+		Psyr_4209	0.49	+4.6
5,013,723	+		Psyr_4209	0.49	-2.4
5,013,817	+		Psyr_4209	0.57	-0.9
5,013,836	+		Psyr_4209	0.58	-1.7
5,013,836	+		Psyr_4209	0.58	-2.2
5,013,836	+		Psyr_4209	0.58	-0.4
5,013,836	+		Psyr_4209	0.58	+0.8
5,013,837	-		Psyr_4209	0.58	-0.2
5,013,837	-		Psyr_4209	0.58	+1.6
5,013,837	-		Psyr_4209	0.58	+0.8
5,013,848	+		Psyr_4209	0.59	+5.0
5,013,848	+		Psyr_4209	0.59	-0.6
5,013,849	-		Psyr_4209	0.59	-2.5
5,013,948	+		Psyr_4209	0.67	+0.6
5,013,948	+		Psyr_4209	0.67	+1.5
5,013,949	-		Psyr_4209	0.67	-1.5
5,013,985	+		Psyr_4209	0.69	+0.3
5,013,986	-		Psyr_4209	0.70	+0.4
5,013,986	-		Psyr_4209	0.70	+1.1
5,013,986	-		Psyr_4209	0.70	+1.4