Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3764

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
4,481,378	+				+0.2
4,481,378	+				-0.5
4,481,378	+				-3.2
4,481,378	+				+1.2
4,481,378	+				+2.2
4,481,379	-				+0.3
4,481,379	-				-1.4
4,481,379	-				+1.2
4,481,379	-				-1.4
4,481,379	-				-1.4
4,481,379	-				+0.3
4,481,379	-				-0.2
4,481,379	-				+2.1
4,481,379	-				-0.6
4,481,381	+				-0.1
4,481,381	+				-3.6
4,481,381	+				+0.2
4,481,381	+				+0.9
4,481,424	-		Psyr_3763	0.14	-1.4
4,481,450	+		Psyr_3763	0.16	+0.5
4,481,596	+		Psyr_3763	0.30	+0.5
4,481,596	+		Psyr_3763	0.30	+0.5
4,481,597	-		Psyr_3763	0.30	-0.3
4,481,597	-		Psyr_3763	0.30	-0.5
4,481,597	-		Psyr_3763	0.30	+0.7
4,481,597	-		Psyr_3763	0.30	+1.7
4,481,720	+		Psyr_3763	0.41	-1.7
4,481,720	+		Psyr_3763	0.41	+1.4
4,481,720	+		Psyr_3763	0.41	+0.9
4,481,721	-		Psyr_3763	0.41	-1.8
4,481,721	-		Psyr_3763	0.41	-0.2
4,481,747	+		Psyr_3763	0.44	-1.9
4,481,747	+		Psyr_3763	0.44	-1.7
4,481,748	-		Psyr_3763	0.44	-1.7
4,481,748	-		Psyr_3763	0.44	-2.1
4,481,748	-		Psyr_3763	0.44	-3.0
4,481,748	-		Psyr_3763	0.44	-3.5
4,481,752	+		Psyr_3763	0.44	-1.6
4,481,752	+		Psyr_3763	0.44	+0.5
4,481,752	+		Psyr_3763	0.44	-0.2
4,481,753	-		Psyr_3763	0.44	-1.0
4,481,753	-		Psyr_3763	0.44	-1.7
4,481,891	+		Psyr_3763	0.57	+1.5
4,481,892	-		Psyr_3763	0.57	+1.8
4,481,912	+		Psyr_3763	0.59	-2.0
4,481,972	+		Psyr_3763	0.65	-3.5
4,481,972	+		Psyr_3763	0.65	+0.6
4,481,972	+		Psyr_3763	0.65	+0.4
4,481,973	-		Psyr_3763	0.65	-0.7
4,481,973	-		Psyr_3763	0.65	-2.8
4,481,973	-		Psyr_3763	0.65	-1.8
4,481,973	-		Psyr_3763	0.65	-4.0
4,482,007	+		Psyr_3763	0.68	-2.8
4,482,007	+		Psyr_3763	0.68	-1.6
4,482,008	-		Psyr_3763	0.68	+0.7
4,482,008	-		Psyr_3763	0.68	-0.0
4,482,008	-		Psyr_3763	0.68	-0.2
4,482,158	+		Psyr_3763	0.82	+3.0
4,482,158	+		Psyr_3763	0.82	+0.3
4,482,158	+		Psyr_3763	0.82	+2.9
4,482,158	+		Psyr_3763	0.82	-0.2
4,482,158	+		Psyr_3763	0.82	-3.0
4,482,158	+		Psyr_3763	0.82	+0.3
4,482,158	+		Psyr_3763	0.82	-0.9
4,482,158	+		Psyr_3763	0.82	-1.9
4,482,158	+		Psyr_3763	0.82	+0.1
4,482,158	+		Psyr_3763	0.82	+1.9
4,482,158	+		Psyr_3763	0.82	-2.6
4,482,158	+		Psyr_3763	0.82	-1.5
4,482,159	-		Psyr_3763	0.82	-3.0
4,482,159	-		Psyr_3763	0.82	+0.3
4,482,159	-		Psyr_3763	0.82	+0.6
4,482,159	-		Psyr_3763	0.82	-2.2
4,482,159	-		Psyr_3763	0.82	-2.7
4,482,159	-		Psyr_3763	0.82	+0.0
4,482,159	-		Psyr_3763	0.82	-1.0
4,482,159	-		Psyr_3763	0.82	-1.3
4,482,159	-		Psyr_3763	0.82	-1.9
4,482,159	-		Psyr_3763	0.82	+0.8
4,482,159	-		Psyr_3763	0.82	-0.9
4,482,161	-		Psyr_3763	0.82	-0.1
4,482,267	-				+3.4
4,482,267	-				-3.0
4,482,462	+		Psyr_3764	0.12	-1.0
4,482,529	+		Psyr_3764	0.20	-1.1
4,482,529	+		Psyr_3764	0.20	-1.4
4,482,529	+		Psyr_3764	0.20	-0.8
4,482,530	-		Psyr_3764	0.20	-2.2
4,482,530	-		Psyr_3764	0.20	+0.7
4,482,552	+		Psyr_3764	0.22	+0.3
4,482,552	+		Psyr_3764	0.22	-2.8
4,482,553	-		Psyr_3764	0.23	-1.5
4,482,553	-		Psyr_3764	0.23	-1.8
4,482,553	-		Psyr_3764	0.23	-1.1
4,482,553	-		Psyr_3764	0.23	-1.3
4,482,553	-		Psyr_3764	0.23	-2.4
4,482,553	-		Psyr_3764	0.23	-2.6
4,482,553	-		Psyr_3764	0.23	+0.6
4,482,553	-		Psyr_3764	0.23	+0.7
4,482,556	+		Psyr_3764	0.23	+0.9
4,482,556	+		Psyr_3764	0.23	-2.3
4,482,557	-		Psyr_3764	0.23	-3.5
4,482,557	-		Psyr_3764	0.23	-1.6
4,482,557	-		Psyr_3764	0.23	-2.8
4,482,557	-		Psyr_3764	0.23	-1.1
4,482,575	+		Psyr_3764	0.25	-0.3
4,482,576	-		Psyr_3764	0.25	-0.4
4,482,576	-		Psyr_3764	0.25	-3.0
4,482,576	-		Psyr_3764	0.25	+0.5
4,482,576	-		Psyr_3764	0.25	+0.9
4,482,576	-		Psyr_3764	0.25	+1.0
4,482,576	-		Psyr_3764	0.25	-3.4
4,482,576	-		Psyr_3764	0.25	-2.9
4,482,577	+		Psyr_3764	0.25	-0.1
4,482,577	+		Psyr_3764	0.25	-1.4
4,482,577	+		Psyr_3764	0.25	+1.3
4,482,577	+		Psyr_3764	0.25	-0.5
4,482,577	+		Psyr_3764	0.25	-0.3
4,482,577	+		Psyr_3764	0.25	-2.3
4,482,578	-		Psyr_3764	0.25	+2.1
4,482,578	-		Psyr_3764	0.25	+1.2
4,482,578	-		Psyr_3764	0.25	+4.3
4,482,578	-		Psyr_3764	0.25	+1.7
4,482,578	-		Psyr_3764	0.25	-1.3
4,482,578	-		Psyr_3764	0.25	-1.7
4,482,582	-		Psyr_3764	0.26	+1.7
4,482,663	-		Psyr_3764	0.35	-0.5
4,482,672	+		Psyr_3764	0.36	+0.1
4,482,683	-		Psyr_3764	0.37	+2.3
4,482,755	+		Psyr_3764	0.46	+0.6
4,482,755	+		Psyr_3764	0.46	-0.6
4,482,755	+		Psyr_3764	0.46	-0.0
4,482,755	+		Psyr_3764	0.46	+1.3
4,482,755	+		Psyr_3764	0.46	+0.3
4,482,755	+		Psyr_3764	0.46	-0.6
4,482,756	-		Psyr_3764	0.46	-1.4
4,482,756	-		Psyr_3764	0.46	+0.3
4,482,756	-		Psyr_3764	0.46	-2.1
4,482,756	-		Psyr_3764	0.46	+2.0
4,482,756	-		Psyr_3764	0.46	-1.0
4,482,756	-		Psyr_3764	0.46	+0.5
4,482,785	+		Psyr_3764	0.49	-2.8
4,482,786	-		Psyr_3764	0.49	-3.6
4,482,820	+		Psyr_3764	0.53	-2.7
4,482,820	+		Psyr_3764	0.53	+0.7
4,482,820	+		Psyr_3764	0.53	-2.4
4,482,821	-		Psyr_3764	0.53	-1.1
4,482,821	-		Psyr_3764	0.53	-0.8
4,482,821	-		Psyr_3764	0.53	+2.3
4,482,821	-		Psyr_3764	0.53	-0.2
4,482,821	-		Psyr_3764	0.53	-0.5
4,482,850	-		Psyr_3764	0.57	-2.1
4,482,850	-		Psyr_3764	0.57	+1.0
4,482,872	+		Psyr_3764	0.59	-2.8
4,482,872	+		Psyr_3764	0.59	-3.0
4,482,872	+		Psyr_3764	0.59	-0.4
4,482,872	+		Psyr_3764	0.59	+0.6
4,482,872	+		Psyr_3764	0.59	-0.8
4,482,872	+		Psyr_3764	0.59	+3.4
4,482,872	+		Psyr_3764	0.59	+0.0
4,482,873	-		Psyr_3764	0.59	-1.1
4,482,873	-		Psyr_3764	0.59	-1.5
4,482,873	-		Psyr_3764	0.59	+1.5
4,482,873	-		Psyr_3764	0.59	+0.6
4,482,873	-		Psyr_3764	0.59	-2.0
4,482,873	-		Psyr_3764	0.59	+1.4
4,482,873	-		Psyr_3764	0.59	-4.0
4,482,873	-		Psyr_3764	0.59	+0.9
4,482,874	+		Psyr_3764	0.59	-0.3
4,482,875	-		Psyr_3764	0.60	-3.6
4,482,875	-		Psyr_3764	0.60	+0.4
4,482,875	-		Psyr_3764	0.60	-3.2
4,482,875	-		Psyr_3764	0.60	+2.3
4,482,875	-		Psyr_3764	0.60	-3.0
4,482,875	-		Psyr_3764	0.60	-1.0
4,482,907	+		Psyr_3764	0.63	+1.7
4,482,907	+		Psyr_3764	0.63	-1.1
4,482,908	-		Psyr_3764	0.63	+0.2
4,482,944	-		Psyr_3764	0.67	-0.8
4,482,979	-		Psyr_3764	0.71	-2.6
4,483,062	+		Psyr_3764	0.81	-1.0
4,483,063	-		Psyr_3764	0.81	+0.3
4,483,169	+				-0.1
4,483,169	+				+1.6
4,483,170	-				+0.2
4,483,215	+				+1.4
4,483,215	+				+2.3
4,483,215	+				-1.4
4,483,216	-				-1.6
4,483,216	-				-0.7
4,483,286	-				-1.4
4,483,286	-				-1.5
4,483,291	-				+1.0
4,483,379	-		Psyr_3765	0.23	-2.1
4,483,379	-		Psyr_3765	0.23	+0.6
4,483,382	+		Psyr_3765	0.23	-1.4
4,483,382	+		Psyr_3765	0.23	-1.3
4,483,382	+		Psyr_3765	0.23	+2.7
4,483,383	-		Psyr_3765	0.23	+1.4
4,483,383	-		Psyr_3765	0.23	-0.7
4,483,383	-		Psyr_3765	0.23	+0.1
4,483,383	-		Psyr_3765	0.23	-2.8
4,483,433	+		Psyr_3765	0.35	+2.4
4,483,433	+		Psyr_3765	0.35	+0.2
4,483,433	+		Psyr_3765	0.35	-2.7
4,483,433	+		Psyr_3765	0.35	-0.4
4,483,434	-		Psyr_3765	0.35	-2.7
4,483,439	+		Psyr_3765	0.36	+2.7
4,483,439	+		Psyr_3765	0.36	-0.4
4,483,439	+		Psyr_3765	0.36	-0.4
4,483,439	+		Psyr_3765	0.36	-2.4
4,483,439	+		Psyr_3765	0.36	+1.2
4,483,439	+		Psyr_3765	0.36	-2.2
4,483,439	+		Psyr_3765	0.36	-2.6
4,483,440	-		Psyr_3765	0.37	-2.0
4,483,440	-		Psyr_3765	0.37	+1.1
4,483,440	-		Psyr_3765	0.37	-2.3
4,483,440	-		Psyr_3765	0.37	+1.8
4,483,440	-		Psyr_3765	0.37	-3.2
4,483,440	-		Psyr_3765	0.37	-2.9
4,483,440	-		Psyr_3765	0.37	+0.9
4,483,456	-		Psyr_3765	0.40	-2.9
4,483,568	-		Psyr_3765	0.66	-0.8
4,483,622	+		Psyr_3765	0.78	+0.8
4,483,654	+		Psyr_3765	0.86	+0.2
4,483,734	+				-2.1
4,483,740	+				-0.6
4,483,795	-				+2.6
4,483,984	+				-0.9
4,483,984	+				+1.3
4,483,984	+				-0.0
4,484,002	+		Psyr_3766	0.11	-2.2
4,484,034	+		Psyr_3766	0.16	+0.6
4,484,034	+		Psyr_3766	0.16	-2.8
4,484,035	-		Psyr_3766	0.16	-3.9
4,484,091	+		Psyr_3766	0.23	-1.4
4,484,092	-		Psyr_3766	0.24	+0.6
4,484,092	-		Psyr_3766	0.24	+0.5
4,484,199	+		Psyr_3766	0.38	-1.5
4,484,199	+		Psyr_3766	0.38	-1.7
4,484,199	+		Psyr_3766	0.38	+2.0
4,484,199	+		Psyr_3766	0.38	-2.9
4,484,200	-		Psyr_3766	0.38	-0.1
4,484,200	-		Psyr_3766	0.38	+1.3