Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3573

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
4,255,275	+		Psyr_3572	0.79	-1.0
4,255,275	+		Psyr_3572	0.79	+1.7
4,255,275	+		Psyr_3572	0.79	+1.4
4,255,275	+		Psyr_3572	0.79	-0.3
4,255,275	+		Psyr_3572	0.79	-2.0
4,255,275	+		Psyr_3572	0.79	-0.3
4,255,275	+		Psyr_3572	0.79	+2.1
4,255,275	+		Psyr_3572	0.79	+0.9
4,255,275	+		Psyr_3572	0.79	-2.1
4,255,276	-		Psyr_3572	0.79	-1.7
4,255,276	-		Psyr_3572	0.79	+1.3
4,255,276	-		Psyr_3572	0.79	+0.3
4,255,276	-		Psyr_3572	0.79	-2.0
4,255,276	-		Psyr_3572	0.79	-0.5
4,255,276	-		Psyr_3572	0.79	+0.6
4,255,276	-		Psyr_3572	0.79	+0.4
4,255,276	-		Psyr_3572	0.79	+2.1
4,255,452	+		Psyr_3572	0.88	-2.8
4,255,452	+		Psyr_3572	0.88	+0.6
4,255,453	-		Psyr_3572	0.88	-2.6
4,255,453	-		Psyr_3572	0.88	+1.9
4,255,453	-		Psyr_3572	0.88	-1.9
4,255,605	+				-0.2
4,255,605	+				-3.1
4,255,605	+				+0.3
4,255,605	+				+1.5
4,255,605	+				-0.8
4,255,605	+				-0.2
4,255,606	-				+1.3
4,255,606	-				-3.0
4,255,606	-				+0.3
4,255,606	-				-0.1
4,255,606	-				+2.4
4,255,606	-				+0.7
4,255,617	+				+0.5
4,255,617	+				-0.4
4,255,617	+				+1.4
4,255,617	+				-0.1
4,255,618	-				-0.1
4,255,618	-				+1.3
4,255,618	-				+0.8
4,255,618	-				+0.4
4,255,639	+				-1.4
4,255,695	-				+0.5
4,255,706	+				+1.7
4,255,718	+				-1.3
4,255,718	+				+0.4
4,255,767	+				+0.1
4,255,767	+				-1.9
4,255,768	-				-1.0
4,255,871	-				-3.0
4,255,874	-				-1.7
4,255,884	+				+0.1
4,255,908	-				+1.9
4,255,908	-				-2.0
4,255,909	+				-1.2
4,255,909	+				-1.2
4,255,909	+				-0.8
4,255,909	+				+0.4
4,255,909	+				-1.7
4,255,909	+				-1.3
4,255,909	+				-2.3
4,255,909	+				-1.4
4,255,909	+				+0.8
4,255,909	+				-1.1
4,255,910	-				+2.8
4,255,910	-				+0.1
4,255,910	-				+0.5
4,255,910	-				-2.7
4,255,910	-				-2.9
4,255,910	-				+3.0
4,255,910	-				+2.2
4,255,910	-				+1.3
4,255,910	-				+0.9
4,255,911	+				+0.5
4,255,911	+				-0.4
4,255,911	+				+0.7
4,255,911	+				-1.7
4,255,912	-				-0.3
4,255,912	-				+0.6
4,255,912	-				-1.3
4,255,912	-				-1.3
4,255,932	+				-2.2
4,255,932	+				+1.7
4,255,932	+				-0.3
4,255,932	+				+1.3
4,255,932	+				-0.4
4,255,932	+				-2.8
4,255,932	+				+2.1
4,255,933	-				+2.3
4,255,933	-				-0.9
4,255,933	-				+2.9
4,255,933	-				-1.1
4,256,083	+				-2.2
4,256,083	+				-1.7
4,256,083	+				+1.3
4,256,084	-				-3.1
4,256,086	+				-0.5
4,256,114	+		Psyr_3573	0.15	+1.3
4,256,114	+		Psyr_3573	0.15	+1.5
4,256,178	+		Psyr_3573	0.39	-0.1
4,256,178	+		Psyr_3573	0.39	+3.0
4,256,178	+		Psyr_3573	0.39	-0.4
4,256,178	+		Psyr_3573	0.39	-0.3
4,256,179	-		Psyr_3573	0.40	-0.2
4,256,180	+		Psyr_3573	0.40	+0.7
4,256,180	+		Psyr_3573	0.40	-2.6
4,256,180	+		Psyr_3573	0.40	-1.1
4,256,180	+		Psyr_3573	0.40	-0.4
4,256,180	+		Psyr_3573	0.40	+0.6
4,256,180	+		Psyr_3573	0.40	+2.6
4,256,180	+		Psyr_3573	0.40	+0.1
4,256,180	+		Psyr_3573	0.40	-2.1
4,256,180	+		Psyr_3573	0.40	-1.8
4,256,180	+		Psyr_3573	0.40	+0.6
4,256,180	+		Psyr_3573	0.40	-0.2
4,256,180	+		Psyr_3573	0.40	-2.8
4,256,180	+		Psyr_3573	0.40	+0.3
4,256,180	+		Psyr_3573	0.40	-1.6
4,256,180	+		Psyr_3573	0.40	+2.5
4,256,180	+		Psyr_3573	0.40	+1.8
4,256,180	+		Psyr_3573	0.40	-2.7
4,256,181	-		Psyr_3573	0.40	-2.8
4,256,181	-		Psyr_3573	0.40	+2.0
4,256,181	-		Psyr_3573	0.40	-0.1
4,256,181	-		Psyr_3573	0.40	-3.6
4,256,181	-				-0.7
4,256,181	-		Psyr_3573	0.40	-1.8
4,256,181	-		Psyr_3573	0.40	-0.6
4,256,181	-		Psyr_3573	0.40	+2.0
4,256,181	-		Psyr_3573	0.40	-0.4
4,256,181	-		Psyr_3573	0.40	+0.4
4,256,181	-				+2.0
4,256,181	-		Psyr_3573	0.40	-0.3
4,256,181	-		Psyr_3573	0.40	+5.7
4,256,181	-		Psyr_3573	0.40	-1.4
4,256,181	-		Psyr_3573	0.40	+3.6
4,256,184	+		Psyr_3573	0.42	-0.3
4,256,213	+		Psyr_3573	0.52	+2.6
4,256,268	+		Psyr_3573	0.73	-1.4
4,256,268	+		Psyr_3573	0.73	+0.9
4,256,268	+		Psyr_3573	0.73	-2.7
4,256,268	+		Psyr_3573	0.73	-2.0
4,256,268	+		Psyr_3573	0.73	+1.6
4,256,268	+		Psyr_3573	0.73	+0.6
4,256,269	-		Psyr_3573	0.73	+2.7
4,256,269	-		Psyr_3573	0.73	-1.6
4,256,269	-		Psyr_3573	0.73	+0.3
4,256,269	-		Psyr_3573	0.73	+2.8
4,256,269	-		Psyr_3573	0.73	-1.5
4,256,269	-		Psyr_3573	0.73	-1.2
4,256,383	-				-2.4
4,256,394	+				-2.5
4,256,394	+				-1.4
4,256,396	+				+0.6
4,256,396	+				+1.0
4,256,396	+				+0.8
4,256,396	+				+1.1
4,256,396	+				-0.3
4,256,396	+				-0.4
4,256,396	+				+1.0
4,256,396	+				-0.6
4,256,396	+				-2.7
4,256,396	+				+0.2
4,256,396	+				-2.1
4,256,396	+				-0.4
4,256,396	+				+0.8
4,256,396	+				-1.0
4,256,397	-				+1.3
4,256,397	-				+0.2
4,256,397	-				-3.2
4,256,397	-				+2.3
4,256,397	-				+1.7
4,256,397	-				+3.7
4,256,397	-				-0.8
4,256,397	-				+1.9
4,256,397	-				-2.8
4,256,397	-				-1.4
4,256,397	-				-0.0
4,256,398	+				-2.6
4,256,398	+				-3.2
4,256,398	+				+0.5
4,256,398	+				+0.0
4,256,398	+				+2.3
4,256,398	+				-1.6
4,256,398	+				+2.9
4,256,398	+				+1.8
4,256,398	+				-0.3
4,256,398	+				-2.2
4,256,398	+				-1.3
4,256,398	+				+0.4
4,256,399	-				+1.1
4,256,399	-				-0.9
4,256,399	-				+4.4
4,256,399	-				-2.1
4,256,399	-				+0.4
4,256,399	-				+3.0
4,256,399	-				-2.0
4,256,452	-				+1.3
4,256,452	-				-2.9
4,256,494	-				+0.8
4,256,521	+				+2.4
4,256,521	+				+2.0
4,256,521	+				-0.6
4,256,521	+				+1.6
4,256,521	+				-3.9
4,256,522	-				-2.7
4,256,546	+				+2.4
4,256,546	+				+1.9
4,256,574	+				+1.4
4,256,574	+				+2.4
4,256,615	-		Psyr_3574	0.10	-0.6
4,256,684	-		Psyr_3574	0.15	+0.7
4,256,735	+		Psyr_3574	0.18	-1.5
4,256,735	+		Psyr_3574	0.18	+2.0
4,256,735	+		Psyr_3574	0.18	+1.0
4,256,735	+		Psyr_3574	0.18	+0.8
4,256,735	+		Psyr_3574	0.18	+2.5
4,256,736	-		Psyr_3574	0.18	-3.4
4,256,772	+		Psyr_3574	0.20	+0.3
4,256,804	+		Psyr_3574	0.22	+2.1
4,256,805	-		Psyr_3574	0.22	-2.6
4,256,900	+		Psyr_3574	0.29	-0.4
4,256,900	+		Psyr_3574	0.29	+0.4
4,256,900	+		Psyr_3574	0.29	-0.7
4,256,900	+		Psyr_3574	0.29	-1.7
4,256,900	+		Psyr_3574	0.29	-0.8
4,256,901	-		Psyr_3574	0.29	-3.4
4,256,901	-		Psyr_3574	0.29	-1.5
4,256,901	-		Psyr_3574	0.29	+1.0
4,256,901	-		Psyr_3574	0.29	-1.5
4,256,901	-		Psyr_3574	0.29	+2.8
4,256,901	-		Psyr_3574	0.29	-2.0
4,256,901	-		Psyr_3574	0.29	+2.5
4,256,901	-		Psyr_3574	0.29	-0.6
4,256,902	+		Psyr_3574	0.29	-3.1
4,256,902	+		Psyr_3574	0.29	+0.6
4,256,902	+		Psyr_3574	0.29	+0.7
4,256,902	+		Psyr_3574	0.29	+0.7
4,256,902	+		Psyr_3574	0.29	+1.0
4,256,902	+		Psyr_3574	0.29	-2.7
4,256,902	+		Psyr_3574	0.29	-1.9
4,256,902	+		Psyr_3574	0.29	-0.6
4,256,902	+		Psyr_3574	0.29	-1.0
4,256,903	-		Psyr_3574	0.29	-2.4
4,256,903	-		Psyr_3574	0.29	+1.1
4,256,903	-		Psyr_3574	0.29	-2.5
4,256,903	-		Psyr_3574	0.29	-0.8
4,256,903	-		Psyr_3574	0.29	+1.7
4,256,903	-		Psyr_3574	0.29	+0.5
4,256,920	+		Psyr_3574	0.30	+0.1
4,256,931	+		Psyr_3574	0.30	+0.2
4,257,193	-		Psyr_3574	0.47	-0.8