Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3478

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
4,148,679	+		Psyr_3477	0.57	+1.8
4,148,680	-		Psyr_3477	0.57	-1.2
4,148,730	-		Psyr_3477	0.60	+1.6
4,148,772	+		Psyr_3477	0.62	-0.6
4,148,772	+		Psyr_3477	0.62	+1.6
4,148,772	+		Psyr_3477	0.62	+2.5
4,148,772	+		Psyr_3477	0.62	+0.9
4,148,772	+		Psyr_3477	0.62	-1.5
4,148,772	+		Psyr_3477	0.62	-1.6
4,148,772	+		Psyr_3477	0.62	-0.7
4,148,772	+		Psyr_3477	0.62	-0.9
4,148,772	+		Psyr_3477	0.62	-0.2
4,148,772	+		Psyr_3477	0.62	-0.9
4,148,772	+		Psyr_3477	0.62	+0.9
4,148,772	+		Psyr_3477	0.62	+1.8
4,148,772	+		Psyr_3477	0.62	-3.5
4,148,772	+		Psyr_3477	0.62	+1.2
4,148,772	+		Psyr_3477	0.62	+0.6
4,148,772	+		Psyr_3477	0.62	-3.4
4,148,772	+		Psyr_3477	0.62	-2.8
4,148,772	+		Psyr_3477	0.62	-1.9
4,148,772	+		Psyr_3477	0.62	-2.6
4,148,772	+		Psyr_3477	0.62	-1.0
4,148,772	+		Psyr_3477	0.62	+0.9
4,148,772	+		Psyr_3477	0.62	+2.3
4,148,773	-		Psyr_3477	0.62	+1.0
4,148,773	-		Psyr_3477	0.62	-3.1
4,148,773	-		Psyr_3477	0.62	+1.7
4,148,773	-		Psyr_3477	0.62	+1.6
4,148,773	-		Psyr_3477	0.62	-2.6
4,148,773	-		Psyr_3477	0.62	-3.1
4,148,773	-		Psyr_3477	0.62	+0.7
4,148,773	-		Psyr_3477	0.62	+0.9
4,148,773	-		Psyr_3477	0.62	-1.5
4,148,773	-		Psyr_3477	0.62	+1.3
4,148,773	-		Psyr_3477	0.62	-0.3
4,148,773	-		Psyr_3477	0.62	-3.6
4,148,773	-		Psyr_3477	0.62	-0.4
4,148,773	-		Psyr_3477	0.62	+1.1
4,148,773	-		Psyr_3477	0.62	+0.9
4,148,773	-		Psyr_3477	0.62	-1.5
4,148,773	-		Psyr_3477	0.62	+0.4
4,148,773	-		Psyr_3477	0.62	+3.1
4,148,773	-		Psyr_3477	0.62	+0.3
4,148,773	-		Psyr_3477	0.62	-1.0
4,148,808	+		Psyr_3477	0.64	-2.6
4,148,808	+		Psyr_3477	0.64	-2.6
4,148,808	+		Psyr_3477	0.64	-1.0
4,148,808	+		Psyr_3477	0.64	-2.1
4,148,809	-		Psyr_3477	0.64	+1.3
4,148,809	-		Psyr_3477	0.64	+0.0
4,148,956	+		Psyr_3477	0.72	+0.6
4,148,957	-		Psyr_3477	0.73	+0.6
4,149,002	-		Psyr_3477	0.75	-2.3
4,149,133	+		Psyr_3477	0.83	-3.2
4,149,134	-		Psyr_3477	0.83	+1.2
4,149,135	+		Psyr_3477	0.83	-3.2
4,149,135	+		Psyr_3477	0.83	+1.9
4,149,135	+		Psyr_3477	0.83	-2.2
4,149,136	-		Psyr_3477	0.83	+0.9
4,149,184	+		Psyr_3477	0.86	-0.4
4,149,185	-		Psyr_3477	0.86	+1.8
4,149,191	-		Psyr_3477	0.86	-0.1
4,149,260	+		Psyr_3477	0.90	+2.1
4,149,260	+		Psyr_3477	0.90	-2.9
4,149,309	+				-2.6
4,149,310	-				-0.1
4,149,310	-				+1.0
4,149,310	-				+0.6
4,149,310	-				-2.6
4,149,310	-				-2.2
4,149,311	+				-0.7
4,149,311	+				+0.2
4,149,311	+				-1.8
4,149,311	+				+1.2
4,149,311	+				+1.7
4,149,311	+				-2.9
4,149,311	+				-2.5
4,149,311	+				-0.1
4,149,311	+				-3.4
4,149,312	-				+1.0
4,149,312	-				+2.5
4,149,312	-				+0.6
4,149,312	-				+0.7
4,149,367	+				-1.6
4,149,367	+				-1.1
4,149,410	-				+1.2
4,149,425	-				-1.5
4,149,467	-				-0.3
4,149,477	+				+2.4
4,149,512	+				+0.3
4,149,513	-				-2.3
4,149,546	-				-1.3
4,149,556	+				-0.9
4,149,556	+				+0.1
4,149,557	-				+1.3
4,149,635	+				+0.9
4,149,635	+				+2.0
4,149,635	+				-0.1
4,149,635	+				-1.0
4,149,635	+				-2.3
4,149,636	-				+1.4
4,149,636	-				+2.1
4,149,649	-				-0.7
4,149,701	+				-2.0
4,149,701	+				-0.0
4,149,701	+				-1.7
4,149,701	+				-1.1
4,149,701	+				-3.4
4,149,702	-				-2.2
4,149,702	-				-0.8
4,149,782	+		Psyr_3478	0.11	-2.5
4,149,782	+		Psyr_3478	0.11	-3.2
4,149,782	+		Psyr_3478	0.11	+1.4
4,149,782	+		Psyr_3478	0.11	-0.7
4,149,782	+		Psyr_3478	0.11	-2.0
4,149,935	+		Psyr_3478	0.23	-3.2
4,149,935	+		Psyr_3478	0.23	-2.6
4,149,935	+		Psyr_3478	0.23	-1.7
4,149,935	+		Psyr_3478	0.23	-3.1
4,149,936	-		Psyr_3478	0.23	-2.5
4,149,936	-		Psyr_3478	0.23	-2.6
4,149,936	-		Psyr_3478	0.23	-3.1
4,149,936	-		Psyr_3478	0.23	-2.6
4,149,936	-		Psyr_3478	0.23	-1.4
4,150,104	+		Psyr_3478	0.35	-2.4
4,150,104	+		Psyr_3478	0.35	-2.1
4,150,105	-		Psyr_3478	0.35	-2.3
4,150,105	-		Psyr_3478	0.35	-2.8
4,150,161	+		Psyr_3478	0.40	+0.8
4,150,161	+		Psyr_3478	0.40	-1.6
4,150,162	-		Psyr_3478	0.40	-0.7
4,150,162	-		Psyr_3478	0.40	-3.1
4,150,162	-		Psyr_3478	0.40	+0.2
4,150,197	+		Psyr_3478	0.42	-1.8
4,150,197	+		Psyr_3478	0.42	-3.3
4,150,255	-		Psyr_3478	0.47	-0.7
4,150,313	+		Psyr_3478	0.51	-2.6
4,150,313	+		Psyr_3478	0.51	-3.7
4,150,313	+		Psyr_3478	0.51	-3.8
4,150,313	+		Psyr_3478	0.51	-3.0
4,150,314	-		Psyr_3478	0.51	-1.1
4,150,314	-		Psyr_3478	0.51	-1.9
4,150,314	-		Psyr_3478	0.51	+0.3
4,150,314	-		Psyr_3478	0.51	-2.7
4,150,349	+		Psyr_3478	0.54	-0.4
4,150,350	-		Psyr_3478	0.54	-4.4
4,150,385	+		Psyr_3478	0.57	-3.1
4,150,400	+		Psyr_3478	0.58	-2.4
4,150,400	+		Psyr_3478	0.58	+0.1
4,150,400	+		Psyr_3478	0.58	-1.6
4,150,400	+		Psyr_3478	0.58	-0.7
4,150,400	+		Psyr_3478	0.58	-2.2
4,150,401	-		Psyr_3478	0.58	-0.8
4,150,401	-		Psyr_3478	0.58	-0.6
4,150,401	-		Psyr_3478	0.58	-0.7
4,150,412	+		Psyr_3478	0.59	-2.1
4,150,412	+		Psyr_3478	0.59	+0.7
4,150,412	+		Psyr_3478	0.59	+1.2
4,150,412	+		Psyr_3478	0.59	-3.2
4,150,412	+		Psyr_3478	0.59	-0.7
4,150,412	+		Psyr_3478	0.59	-3.4
4,150,412	+		Psyr_3478	0.59	+0.1
4,150,412	+		Psyr_3478	0.59	-3.0
4,150,412	+		Psyr_3478	0.59	-2.2
4,150,412	+		Psyr_3478	0.59	+2.1
4,150,412	+		Psyr_3478	0.59	-0.8
4,150,413	-		Psyr_3478	0.59	-1.6
4,150,413	-		Psyr_3478	0.59	-0.3
4,150,413	-		Psyr_3478	0.59	+1.8
4,150,413	-		Psyr_3478	0.59	-3.8
4,150,413	-		Psyr_3478	0.59	-3.3
4,150,413	-		Psyr_3478	0.59	-1.0
4,150,413	-		Psyr_3478	0.59	+2.7
4,150,413	-		Psyr_3478	0.59	-1.8
4,150,413	-		Psyr_3478	0.59	-4.0
4,150,413	-		Psyr_3478	0.59	+0.4
4,150,413	-		Psyr_3478	0.59	-1.2
4,150,413	-		Psyr_3478	0.59	-2.5
4,150,416	+		Psyr_3478	0.59	-2.0
4,150,416	+		Psyr_3478	0.59	-3.7
4,150,416	+		Psyr_3478	0.59	-0.9
4,150,417	-		Psyr_3478	0.59	-0.4
4,150,584	-		Psyr_3478	0.71	-0.4
4,150,584	-		Psyr_3478	0.71	+0.8
4,150,609	-		Psyr_3478	0.73	-2.7
4,150,620	-		Psyr_3478	0.74	-1.3
4,150,620	-		Psyr_3478	0.74	-1.5
4,150,659	-		Psyr_3478	0.77	-2.9
4,150,659	-		Psyr_3478	0.77	+2.7
4,150,815	+		Psyr_3478	0.89	-2.2
4,150,835	+				-1.5
4,150,836	-				-4.2
4,150,836	-				-1.3
4,150,836	-				-3.2
4,150,932	-				-3.0
4,150,989	+				-3.8
4,151,100	+		Psyr_3479	0.16	-1.9
4,151,101	-		Psyr_3479	0.16	-0.9
4,151,154	+		Psyr_3479	0.24	+3.1
4,151,154	+		Psyr_3479	0.24	-2.5
4,151,154	+		Psyr_3479	0.24	-2.4
4,151,155	-		Psyr_3479	0.24	+0.4
4,151,155	-		Psyr_3479	0.24	-1.2
4,151,155	-		Psyr_3479	0.24	+2.2
4,151,271	+		Psyr_3479	0.41	+0.3
4,151,272	-		Psyr_3479	0.41	-1.6
4,151,272	-		Psyr_3479	0.41	-0.8
4,151,419	-		Psyr_3479	0.62	-2.1
4,151,419	-		Psyr_3479	0.62	+1.4
4,151,419	-		Psyr_3479	0.62	-0.1
4,151,666	-				-3.0
4,151,691	+				-1.3
4,151,691	+				-4.0
4,151,692	-				+0.5
4,151,692	-				+1.3
4,151,820	+		Psyr_3480	0.29	-0.4
4,151,820	+		Psyr_3480	0.29	-0.4
4,151,823	+		Psyr_3480	0.29	-1.5
4,151,824	-		Psyr_3480	0.30	+0.6
4,151,824	-		Psyr_3480	0.30	-3.4
4,151,824	-		Psyr_3480	0.30	-0.8
4,151,824	-		Psyr_3480	0.30	-2.8
4,151,829	+		Psyr_3480	0.31	-0.2
4,151,829	+		Psyr_3480	0.31	-0.8