Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2435

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2434 and Psyr_2435 are separated by 22 nucleotidesPsyr_2435 and Psyr_2436 are separated by 10 nucleotides Psyr_2434: Psyr_2434 - Carbohydrate kinase, PfkB, at 2,818,007 to 2,818,945 _2434 Psyr_2435: Psyr_2435 - Xylulokinase, at 2,818,968 to 2,820,449 _2435 Psyr_2436: Psyr_2436 - Mannitol dehydrogenase, at 2,820,460 to 2,821,941 _2436 Position (kb) 2818 2819 2820 2821Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2817.985 kb on + strandat 2818.184 kb on - strandat 2818.303 kb on + strand, within Psyr_2434at 2818.304 kb on - strand, within Psyr_2434at 2818.304 kb on - strand, within Psyr_2434at 2818.647 kb on + strand, within Psyr_2434at 2818.647 kb on + strand, within Psyr_2434at 2818.647 kb on + strand, within Psyr_2434at 2818.648 kb on - strand, within Psyr_2434at 2818.648 kb on - strand, within Psyr_2434at 2818.648 kb on - strand, within Psyr_2434at 2818.771 kb on - strand, within Psyr_2434at 2818.945 kb on + strandat 2818.945 kb on + strandat 2818.945 kb on + strandat 2818.945 kb on + strandat 2818.945 kb on + strandat 2818.945 kb on + strandat 2818.946 kb on - strandat 2818.946 kb on - strandat 2818.994 kb on - strandat 2819.002 kb on + strandat 2819.318 kb on + strand, within Psyr_2435at 2819.641 kb on + strand, within Psyr_2435at 2819.641 kb on + strand, within Psyr_2435at 2819.641 kb on + strand, within Psyr_2435at 2819.642 kb on - strand, within Psyr_2435at 2819.691 kb on - strand, within Psyr_2435at 2819.960 kb on - strand, within Psyr_2435at 2819.960 kb on - strand, within Psyr_2435at 2819.969 kb on - strand, within Psyr_2435at 2819.969 kb on - strand, within Psyr_2435at 2820.050 kb on + strand, within Psyr_2435at 2820.050 kb on + strand, within Psyr_2435at 2820.609 kb on + strand, within Psyr_2436at 2820.612 kb on + strand, within Psyr_2436at 2820.612 kb on + strand, within Psyr_2436at 2820.612 kb on + strand, within Psyr_2436at 2820.612 kb on + strand, within Psyr_2436at 2820.613 kb on - strand, within Psyr_2436at 2820.613 kb on - strand, within Psyr_2436at 2820.613 kb on - strand, within Psyr_2436at 2820.613 kb on - strand, within Psyr_2436at 2820.671 kb on + strand, within Psyr_2436at 2820.671 kb on + strand, within Psyr_2436at 2820.672 kb on - strand, within Psyr_2436at 2820.672 kb on - strand, within Psyr_2436at 2820.704 kb on + strand, within Psyr_2436at 2820.704 kb on + strand, within Psyr_2436at 2820.882 kb on - strand, within Psyr_2436at 2820.939 kb on + strand, within Psyr_2436at 2820.939 kb on + strand, within Psyr_2436at 2820.940 kb on - strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.941 kb on + strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.942 kb on - strand, within Psyr_2436at 2820.953 kb on + strand, within Psyr_2436at 2820.953 kb on + strand, within Psyr_2436at 2820.953 kb on + strand, within Psyr_2436at 2820.953 kb on + strand, within Psyr_2436at 2820.953 kb on + strand, within Psyr_2436at 2820.953 kb on + strand, within Psyr_2436at 2820.953 kb on + strand, within Psyr_2436at 2820.954 kb on - strand, within Psyr_2436at 2820.954 kb on - strand, within Psyr_2436at 2820.954 kb on - strand, within Psyr_2436at 2820.954 kb on - strand, within Psyr_2436at 2820.954 kb on - strand, within Psyr_2436at 2820.954 kb on - strand, within Psyr_2436at 2820.954 kb on - strand, within Psyr_2436at 2820.954 kb on - strand, within Psyr_2436at 2821.020 kb on - strand, within Psyr_2436at 2821.071 kb on - strand, within Psyr_2436at 2821.246 kb on - strand, within Psyr_2436at 2821.246 kb on - strand, within Psyr_2436at 2821.246 kb on - strand, within Psyr_2436at 2821.246 kb on - strand, within Psyr_2436at 2821.248 kb on + strand, within Psyr_2436at 2821.249 kb on - strand, within Psyr_2436at 2821.402 kb on - strand, within Psyr_2436

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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2,817,985 + -1.4
2,818,184 - -0.3
2,818,303 + Psyr_2434 0.32 +0.7
2,818,304 - Psyr_2434 0.32 -1.7
2,818,304 - Psyr_2434 0.32 -1.5
2,818,647 + Psyr_2434 0.68 -2.5
2,818,647 + Psyr_2434 0.68 +1.1
2,818,647 + Psyr_2434 0.68 -0.9
2,818,648 - Psyr_2434 0.68 +2.1
2,818,648 - Psyr_2434 0.68 -0.9
2,818,648 - Psyr_2434 0.68 -2.2
2,818,771 - Psyr_2434 0.81 -1.5
2,818,945 + +1.0
2,818,945 + -2.9
2,818,945 + -2.8
2,818,945 + -2.3
2,818,945 + +0.6
2,818,945 + -2.6
2,818,946 - +0.8
2,818,946 - -0.4
2,818,994 - -2.9
2,819,002 + +0.4
2,819,318 + Psyr_2435 0.24 +0.8
2,819,641 + Psyr_2435 0.45 -3.1
2,819,641 + Psyr_2435 0.45 -2.3
2,819,641 + Psyr_2435 0.45 -1.3
2,819,642 - Psyr_2435 0.45 -2.5
2,819,691 - Psyr_2435 0.49 -2.7
2,819,960 - Psyr_2435 0.67 -0.9
2,819,960 - Psyr_2435 0.67 -3.2
2,819,969 - Psyr_2435 0.68 +0.1
2,819,969 - Psyr_2435 0.68 +1.1
2,820,050 + Psyr_2435 0.73 -0.4
2,820,050 + Psyr_2435 0.73 -0.8
2,820,609 + Psyr_2436 0.10 -2.7
2,820,612 + Psyr_2436 0.10 +1.7
2,820,612 + Psyr_2436 0.10 +0.6
2,820,612 + Psyr_2436 0.10 -2.3
2,820,612 + Psyr_2436 0.10 +0.7
2,820,613 - Psyr_2436 0.10 +0.1
2,820,613 - Psyr_2436 0.10 -2.0
2,820,613 - Psyr_2436 0.10 -1.6
2,820,613 - Psyr_2436 0.10 -0.3
2,820,671 + Psyr_2436 0.14 -2.3
2,820,671 + Psyr_2436 0.14 -0.8
2,820,672 - Psyr_2436 0.14 +1.8
2,820,672 - Psyr_2436 0.14 -1.7
2,820,704 + Psyr_2436 0.16 -1.7
2,820,704 + Psyr_2436 0.16 -2.4
2,820,882 - Psyr_2436 0.28 -2.0
2,820,939 + Psyr_2436 0.32 -1.3
2,820,939 + Psyr_2436 0.32 -0.2
2,820,940 - Psyr_2436 0.32 -0.7
2,820,941 + Psyr_2436 0.32 -0.3
2,820,941 + Psyr_2436 0.32 -2.2
2,820,941 + Psyr_2436 0.32 -2.3
2,820,941 + Psyr_2436 0.32 -1.2
2,820,941 + Psyr_2436 0.32 +3.5
2,820,941 + Psyr_2436 0.32 +1.3
2,820,941 + Psyr_2436 0.32 -2.8
2,820,941 + Psyr_2436 0.32 +2.1
2,820,941 + Psyr_2436 0.32 +0.6
2,820,941 + Psyr_2436 0.32 +1.2
2,820,942 - Psyr_2436 0.33 -0.4
2,820,942 - Psyr_2436 0.33 +1.7
2,820,942 - Psyr_2436 0.33 -0.4
2,820,942 - Psyr_2436 0.33 +1.5
2,820,942 - Psyr_2436 0.33 +2.1
2,820,942 - Psyr_2436 0.33 +1.9
2,820,942 - Psyr_2436 0.33 -1.5
2,820,942 - Psyr_2436 0.33 -0.9
2,820,942 - Psyr_2436 0.33 +2.2
2,820,942 - Psyr_2436 0.33 +0.0
2,820,942 - Psyr_2436 0.33 -2.7
2,820,942 - Psyr_2436 0.33 +0.7
2,820,942 - Psyr_2436 0.33 +1.7
2,820,942 - Psyr_2436 0.33 -2.0
2,820,953 + Psyr_2436 0.33 -1.2
2,820,953 + Psyr_2436 0.33 -2.1
2,820,953 + Psyr_2436 0.33 +1.3
2,820,953 + Psyr_2436 0.33 -1.8
2,820,953 + Psyr_2436 0.33 +0.1
2,820,953 + Psyr_2436 0.33 +1.5
2,820,953 + Psyr_2436 0.33 +1.0
2,820,954 - Psyr_2436 0.33 +2.1
2,820,954 - Psyr_2436 0.33 +0.7
2,820,954 - Psyr_2436 0.33 -2.3
2,820,954 - Psyr_2436 0.33 +1.1
2,820,954 - Psyr_2436 0.33 +0.1
2,820,954 - Psyr_2436 0.33 +0.6
2,820,954 - Psyr_2436 0.33 -2.8
2,820,954 - Psyr_2436 0.33 -2.0
2,821,020 - Psyr_2436 0.38 +3.7
2,821,071 - Psyr_2436 0.41 -1.4
2,821,246 - Psyr_2436 0.53 -1.3
2,821,246 - Psyr_2436 0.53 -0.4
2,821,246 - Psyr_2436 0.53 -3.1
2,821,246 - Psyr_2436 0.53 +4.7
2,821,248 + Psyr_2436 0.53 +1.0
2,821,249 - Psyr_2436 0.53 +0.7
2,821,402 - Psyr_2436 0.64 -2.1

Or see this region's nucleotide sequence