Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1608

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,806,726	+		Psyr_1607	0.36	+0.9
1,806,727	-		Psyr_1607	0.36	-1.1
1,806,727	-		Psyr_1607	0.36	+6.8
1,806,727	-		Psyr_1607	0.36	-2.8
1,806,915	+		Psyr_1607	0.61	+5.8
1,806,915	+		Psyr_1607	0.61	-1.1
1,806,915	+		Psyr_1607	0.61	+0.6
1,806,915	+		Psyr_1607	0.61	-2.1
1,806,915	+		Psyr_1607	0.61	+0.1
1,806,915	+		Psyr_1607	0.61	-1.9
1,806,915	+		Psyr_1607	0.61	-2.0
1,806,915	+		Psyr_1607	0.61	+0.7
1,806,916	-		Psyr_1607	0.61	-1.4
1,806,916	-		Psyr_1607	0.61	-1.6
1,806,916	-		Psyr_1607	0.61	+0.7
1,806,916	-		Psyr_1607	0.61	+0.9
1,806,916	-		Psyr_1607	0.61	+3.0
1,806,916	-		Psyr_1607	0.61	+3.2
1,806,916	-		Psyr_1607	0.61	-2.2
1,806,928	-		Psyr_1607	0.62	-3.1
1,806,993	+		Psyr_1607	0.71	-2.8
1,806,993	+		Psyr_1607	0.71	-2.2
1,806,993	+		Psyr_1607	0.71	+1.1
1,806,994	-		Psyr_1607	0.71	+0.9
1,806,994	-		Psyr_1607	0.71	+0.5
1,807,125	+		Psyr_1607	0.88	-3.0
1,807,125	+		Psyr_1607	0.88	-1.9
1,807,181	+				-3.1
1,807,182	-				+0.8
1,807,223	-				-0.8
1,807,279	+				+1.0
1,807,284	-				+2.0
1,807,284	-				-1.1
1,807,419	-				+1.0
1,807,450	-				-2.1
1,807,453	+				-2.7
1,807,492	-				-1.1
1,807,521	+				-3.6
1,807,651	-				+0.6
1,807,651	-				+2.9
1,807,659	+				+1.7
1,807,659	+				-2.6
1,807,659	+				-2.4
1,807,659	+				+0.0
1,807,660	-				+2.9
1,807,673	-				+1.9
1,807,715	+				-3.6
1,807,715	+				-2.4
1,807,716	-				-0.1
1,807,739	+				-1.2
1,807,739	+				+0.3
1,807,740	-				+2.5
1,807,740	-				-1.1
1,807,740	-				+4.1
1,807,740	-				+0.4
1,807,740	-				+0.4
1,807,741	+				+1.6
1,807,741	+				+2.7
1,807,741	+				+1.0
1,807,741	+				-1.8
1,807,742	-				+0.5
1,807,742	-				+2.1
1,807,742	-				+2.9
1,807,742	-				-0.9
1,807,774	-				+1.9
1,807,847	-				-0.6
1,808,077	+				-0.3
1,808,078	-				+1.1
1,808,078	-				+1.1
1,808,170	+		Psyr_1608	0.12	-1.7
1,808,170	+		Psyr_1608	0.12	+1.0
1,808,170	+		Psyr_1608	0.12	+1.2
1,808,171	-		Psyr_1608	0.12	+2.7
1,808,174	+		Psyr_1608	0.12	+1.8
1,808,174	+		Psyr_1608	0.12	+1.1
1,808,218	-		Psyr_1608	0.13	+3.4
1,808,218	-		Psyr_1608	0.13	-1.4
1,808,321	+		Psyr_1608	0.16	+1.2
1,808,487	-		Psyr_1608	0.20	-1.8
1,808,631	-		Psyr_1608	0.24	-2.4
1,808,657	+		Psyr_1608	0.24	+1.8
1,808,658	-		Psyr_1608	0.24	-0.4
1,808,729	+		Psyr_1608	0.26	+0.4
1,808,801	+		Psyr_1608	0.28	-0.2
1,809,610	-		Psyr_1608	0.48	+2.6
1,809,883	+		Psyr_1608	0.55	-1.0
1,809,883	+		Psyr_1608	0.55	-0.2
1,809,883	+		Psyr_1608	0.55	+0.2
1,809,883	+		Psyr_1608	0.55	+1.5
1,809,883	+		Psyr_1608	0.55	-2.9
1,809,884	-		Psyr_1608	0.55	+0.3
1,809,884	-		Psyr_1608	0.55	-1.5
1,809,887	+		Psyr_1608	0.55	-1.5
1,809,887	+		Psyr_1608	0.55	-1.6
1,809,887	+		Psyr_1608	0.55	-1.6
1,809,887	+		Psyr_1608	0.55	-2.8
1,809,887	+		Psyr_1608	0.55	+2.6
1,809,888	-		Psyr_1608	0.55	-2.8
1,809,888	-		Psyr_1608	0.55	+1.7
1,809,888	-		Psyr_1608	0.55	-2.9
1,809,888	-		Psyr_1608	0.55	+2.1
1,809,888	-		Psyr_1608	0.55	-1.9
1,809,888	-		Psyr_1608	0.55	-3.1
1,809,888	-		Psyr_1608	0.55	-3.6
1,809,888	-		Psyr_1608	0.55	+2.3
1,809,888	-		Psyr_1608	0.55	+1.1
1,809,888	-		Psyr_1608	0.55	-0.5
1,809,888	-		Psyr_1608	0.55	-0.1
1,809,906	-		Psyr_1608	0.55	+0.6
1,809,953	+		Psyr_1608	0.56	-0.6
1,810,001	+		Psyr_1608	0.57	-0.4
1,810,002	-		Psyr_1608	0.58	+0.3
1,810,025	+		Psyr_1608	0.58	-2.3
1,810,098	-		Psyr_1608	0.60	-0.1
1,810,161	+		Psyr_1608	0.61	-0.5
1,810,234	-		Psyr_1608	0.63	+1.9
1,810,529	+		Psyr_1608	0.71	-1.2
1,810,529	+		Psyr_1608	0.71	+0.9
1,810,529	+		Psyr_1608	0.71	+0.1
1,810,530	-		Psyr_1608	0.71	+1.4
1,810,530	-		Psyr_1608	0.71	+1.7
1,810,545	+		Psyr_1608	0.71	-2.7
1,810,546	-		Psyr_1608	0.71	-2.8
1,810,546	-		Psyr_1608	0.71	-1.0
1,810,673	+		Psyr_1608	0.74	+1.7
1,810,674	-		Psyr_1608	0.74	+0.8
1,810,674	-		Psyr_1608	0.74	+0.5
1,810,674	-		Psyr_1608	0.74	-1.8
1,810,737	+		Psyr_1608	0.76	+1.3
1,810,738	-		Psyr_1608	0.76	-2.0
1,810,890	-		Psyr_1608	0.79	-0.9
1,810,890	-		Psyr_1608	0.79	+5.4
1,810,914	-		Psyr_1608	0.80	-0.2
1,810,914	-		Psyr_1608	0.80	+3.9
1,810,953	+		Psyr_1608	0.81	+3.6
1,811,058	-		Psyr_1608	0.84	-1.6
1,811,058	-		Psyr_1608	0.84	+1.5
1,811,111	+		Psyr_1608	0.85	-1.9
1,811,111	+		Psyr_1608	0.85	+2.0
1,811,111	+		Psyr_1608	0.85	-0.4
1,811,111	+		Psyr_1608	0.85	+1.9
1,811,111	+		Psyr_1608	0.85	-1.5
1,811,112	-		Psyr_1608	0.85	-0.2
1,811,112	-		Psyr_1608	0.85	+0.3
1,811,112	-		Psyr_1608	0.85	+1.7
1,811,112	-		Psyr_1608	0.85	+0.9
1,811,112	-		Psyr_1608	0.85	-0.1
1,811,112	-		Psyr_1608	0.85	-1.1
1,811,219	+		Psyr_1608	0.88	+0.7
1,811,220	-		Psyr_1608	0.88	+1.7
1,811,300	-		Psyr_1608	0.90	+0.2
1,811,300	-		Psyr_1608	0.90	-2.0
1,811,345	+				+0.7
1,811,345	+				-1.6
1,811,346	-				+0.4
1,811,394	+				-0.5
1,811,394	+				+1.4
1,811,394	+				+1.3
1,811,412	-				-1.3
1,811,489	+				-3.6
1,811,489	+				-1.5
1,811,490	-				+1.9
1,811,490	-				+1.0
1,811,520	-				-0.3
1,811,595	+				-2.1
1,811,595	+				-1.4
1,811,596	-				-0.3
1,811,644	+				+1.5
1,811,644	+				-0.1
1,811,645	-				+1.6
1,811,645	-				+2.9
1,811,645	-				-1.0
1,811,649	+				+0.4
1,811,652	+				+0.5
1,811,652	+				+0.1
1,811,673	-				-1.5
1,811,713	+				+1.5
1,811,713	+				-1.1
1,811,713	+				-0.5
1,811,714	-				+1.9
1,811,714	-				-2.2
1,811,796	+				-0.3
1,811,796	+				+0.9
1,811,796	+				-1.7
1,811,798	+				-2.7
1,811,799	-				+1.4
1,811,822	-				+2.9
1,811,822	-				+0.1
1,811,827	-				+1.9
1,811,827	-				+2.9
1,811,827	-				-1.5
1,811,827	-				-1.0
1,811,862	+				+1.9
1,811,875	-				-1.4
1,811,994	+				+0.7
1,811,994	+				+0.8
1,811,994	+				+2.8
1,811,995	-				-0.4
1,811,995	-				-2.2
1,811,995	-				-1.3
1,811,995	-				+1.4
1,812,009	-				-2.4
1,812,089	+				-0.7
1,812,089	+				+1.3
1,812,090	-				-2.4
1,812,315	+		Psyr_1609	0.27	+1.1
1,812,315	+		Psyr_1609	0.27	+0.9
1,812,316	-		Psyr_1609	0.27	+0.3
1,812,316	-		Psyr_1609	0.27	-0.7
1,812,316	-		Psyr_1609	0.27	-0.8
1,812,381	+		Psyr_1609	0.32	+0.9
1,812,381	+		Psyr_1609	0.32	-2.5
1,812,382	-		Psyr_1609	0.32	-3.4
1,812,382	-		Psyr_1609	0.32	-0.1
1,812,618	+		Psyr_1609	0.50	-2.4
1,812,619	-		Psyr_1609	0.50	-3.1
1,812,619	-		Psyr_1609	0.50	+1.9
1,812,633	+		Psyr_1609	0.51	-0.8