Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1492

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,679,105	-		Psyr_1491	0.56	-2.4
1,679,178	+		Psyr_1491	0.61	-2.5
1,679,178	+		Psyr_1491	0.61	+1.3
1,679,178	+		Psyr_1491	0.61	+3.0
1,679,179	-		Psyr_1491	0.61	+1.1
1,679,232	+		Psyr_1491	0.64	-2.6
1,679,252	+		Psyr_1491	0.65	-0.3
1,679,252	+		Psyr_1491	0.65	+0.6
1,679,252	+		Psyr_1491	0.65	-0.5
1,679,252	+		Psyr_1491	0.65	-1.7
1,679,252	+		Psyr_1491	0.65	+2.6
1,679,252	+		Psyr_1491	0.65	-2.2
1,679,252	+		Psyr_1491	0.65	-1.8
1,679,252	+		Psyr_1491	0.65	-0.8
1,679,253	-		Psyr_1491	0.65	-0.6
1,679,253	-		Psyr_1491	0.65	+0.4
1,679,253	-		Psyr_1491	0.65	+0.4
1,679,253	-		Psyr_1491	0.65	-0.9
1,679,253	-		Psyr_1491	0.65	+0.6
1,679,253	-		Psyr_1491	0.65	-2.8
1,679,253	-		Psyr_1491	0.65	-0.7
1,679,267	+		Psyr_1491	0.66	-0.6
1,679,311	-		Psyr_1491	0.69	+2.1
1,679,365	+		Psyr_1491	0.72	+2.5
1,679,365	+		Psyr_1491	0.72	-0.2
1,679,365	+		Psyr_1491	0.72	-0.6
1,679,365	+		Psyr_1491	0.72	-3.1
1,679,365	+		Psyr_1491	0.72	+1.5
1,679,366	-		Psyr_1491	0.72	-0.2
1,679,366	-		Psyr_1491	0.72	+1.3
1,679,366	-		Psyr_1491	0.72	-3.2
1,679,366	-		Psyr_1491	0.72	-1.8
1,679,447	+		Psyr_1491	0.77	-0.7
1,679,457	-		Psyr_1491	0.78	-1.1
1,679,516	+		Psyr_1491	0.82	-0.5
1,679,516	+		Psyr_1491	0.82	+3.9
1,679,516	+		Psyr_1491	0.82	+1.5
1,679,516	+		Psyr_1491	0.82	-1.7
1,679,516	+		Psyr_1491	0.82	+1.7
1,679,516	+		Psyr_1491	0.82	-1.1
1,679,516	+		Psyr_1491	0.82	-2.6
1,679,516	+		Psyr_1491	0.82	+1.4
1,679,516	+		Psyr_1491	0.82	+0.4
1,679,516	+		Psyr_1491	0.82	-1.6
1,679,516	+		Psyr_1491	0.82	-1.5
1,679,516	+		Psyr_1491	0.82	-0.6
1,679,517	-		Psyr_1491	0.82	+1.1
1,679,517	-		Psyr_1491	0.82	-2.2
1,679,517	-		Psyr_1491	0.82	-1.7
1,679,517	-		Psyr_1491	0.82	-1.9
1,679,517	-		Psyr_1491	0.82	-1.4
1,679,517	-		Psyr_1491	0.82	+0.5
1,679,517	-		Psyr_1491	0.82	+1.0
1,679,517	-		Psyr_1491	0.82	+0.1
1,679,517	-		Psyr_1491	0.82	-2.4
1,679,517	-		Psyr_1491	0.82	-1.4
1,679,517	-		Psyr_1491	0.82	+0.3
1,679,517	-		Psyr_1491	0.82	-2.5
1,679,517	-		Psyr_1491	0.82	-1.9
1,679,520	+		Psyr_1491	0.82	+0.3
1,679,520	+		Psyr_1491	0.82	-4.0
1,679,520	+		Psyr_1491	0.82	+1.3
1,679,520	+		Psyr_1491	0.82	+0.0
1,679,520	+		Psyr_1491	0.82	-2.8
1,679,520	+		Psyr_1491	0.82	-1.5
1,679,520	+		Psyr_1491	0.82	+0.4
1,679,521	-		Psyr_1491	0.82	+1.4
1,679,521	-		Psyr_1491	0.82	-1.0
1,679,522	+		Psyr_1491	0.82	-2.2
1,679,522	+		Psyr_1491	0.82	-3.7
1,679,522	+		Psyr_1491	0.82	-0.9
1,679,522	+		Psyr_1491	0.82	+1.4
1,679,522	+		Psyr_1491	0.82	+0.1
1,679,522	+		Psyr_1491	0.82	-3.1
1,679,522	+		Psyr_1491	0.82	-2.2
1,679,523	-		Psyr_1491	0.82	+1.1
1,679,523	-		Psyr_1491	0.82	-0.1
1,679,523	-		Psyr_1491	0.82	-0.9
1,679,523	-		Psyr_1491	0.82	+0.1
1,679,661	+				-1.3
1,679,662	-				-1.9
1,679,722	+				-1.4
1,679,723	-				+1.1
1,679,797	+				-0.5
1,679,798	-				-1.6
1,679,798	-				-1.8
1,679,798	-				-1.0
1,679,798	-				+2.3
1,679,798	-				-0.2
1,679,799	+				-2.4
1,679,799	+				-4.0
1,679,800	-				-1.8
1,679,800	-				-2.1
1,679,800	-				+0.3
1,679,814	+				+0.6
1,679,814	+				+1.6
1,679,859	-				-0.4
1,679,882	+				-0.8
1,679,883	-				-2.5
1,679,933	-				+0.4
1,679,958	+				+1.7
1,679,958	+				+1.1
1,679,958	+				+0.9
1,679,959	-				+1.7
1,679,959	-				+0.4
1,679,959	-				-1.5
1,679,959	-				+1.7
1,679,959	-				+0.8
1,679,959	-				+1.3
1,679,966	+				-0.9
1,679,966	+				-0.1
1,679,966	+				-1.0
1,679,967	-				+1.8
1,679,967	-				+0.6
1,679,967	-				-0.6
1,679,973	+				-0.8
1,679,974	-				-0.2
1,679,974	-				-1.0
1,679,974	-				-0.9
1,680,442	+		Psyr_1492	0.37	-1.3
1,680,458	-		Psyr_1492	0.38	+0.0
1,680,458	-		Psyr_1492	0.38	-2.7
1,680,458	-				+2.5
1,680,458	-		Psyr_1492	0.38	-1.1
1,680,504	-		Psyr_1492	0.43	+0.1
1,680,539	+		Psyr_1492	0.47	-2.5
1,680,539	+		Psyr_1492	0.47	-0.1
1,680,539	+		Psyr_1492	0.47	-0.6
1,680,540	-		Psyr_1492	0.47	-0.4
1,680,540	-		Psyr_1492	0.47	+0.2
1,680,540	-		Psyr_1492	0.47	+0.5
1,680,540	-		Psyr_1492	0.47	+2.2
1,680,579	+		Psyr_1492	0.51	+2.2
1,680,579	+		Psyr_1492	0.51	+4.3
1,680,655	+		Psyr_1492	0.59	+2.3
1,680,655	+		Psyr_1492	0.59	-2.6
1,680,655	+		Psyr_1492	0.59	+1.9
1,680,655	+		Psyr_1492	0.59	+0.5
1,680,656	-		Psyr_1492	0.59	-2.3
1,680,682	+		Psyr_1492	0.61	+0.5
1,680,682	+		Psyr_1492	0.61	-0.4
1,680,682	+		Psyr_1492	0.61	-0.3
1,680,683	-		Psyr_1492	0.62	+1.0
1,680,683	-		Psyr_1492	0.62	+1.2
1,680,687	+		Psyr_1492	0.62	-0.7
1,680,688	-		Psyr_1492	0.62	-1.6
1,680,688	-		Psyr_1492	0.62	-2.2
1,680,688	-		Psyr_1492	0.62	-2.4
1,680,719	+		Psyr_1492	0.65	+1.2
1,680,719	+		Psyr_1492	0.65	-0.5
1,680,719	+		Psyr_1492	0.65	+0.7
1,680,719	+		Psyr_1492	0.65	+1.1
1,680,719	+		Psyr_1492	0.65	-1.4
1,680,720	-		Psyr_1492	0.65	+1.3
1,680,720	-		Psyr_1492	0.65	-2.8
1,680,831	+		Psyr_1492	0.77	+0.7
1,680,831	+		Psyr_1492	0.77	-3.2
1,680,831	+		Psyr_1492	0.77	-1.2
1,680,831	+		Psyr_1492	0.77	+1.0
1,680,831	+		Psyr_1492	0.77	+2.2
1,680,831	+		Psyr_1492	0.77	-1.7
1,680,831	+		Psyr_1492	0.77	-0.6
1,680,831	+		Psyr_1492	0.77	-1.6
1,680,831	+		Psyr_1492	0.77	+0.5
1,680,831	+		Psyr_1492	0.77	+0.2
1,680,831	+		Psyr_1492	0.77	+1.4
1,680,831	+		Psyr_1492	0.77	-2.1
1,680,831	+		Psyr_1492	0.77	-0.6
1,680,831	+				-0.3
1,680,831	+		Psyr_1492	0.77	-0.6
1,680,831	+		Psyr_1492	0.77	+0.3
1,680,832	-		Psyr_1492	0.77	+0.3
1,680,832	-		Psyr_1492	0.77	+0.6
1,680,832	-		Psyr_1492	0.77	+0.3
1,680,832	-		Psyr_1492	0.77	-1.4
1,680,832	-		Psyr_1492	0.77	+0.5
1,680,832	-		Psyr_1492	0.77	+1.1
1,680,832	-		Psyr_1492	0.77	-1.4
1,680,832	-		Psyr_1492	0.77	+3.3
1,680,832	-		Psyr_1492	0.77	+0.5
1,680,832	-		Psyr_1492	0.77	+0.4
1,680,832	-		Psyr_1492	0.77	+1.0
1,680,832	-		Psyr_1492	0.77	-1.8
1,680,832	-		Psyr_1492	0.77	-2.5
1,680,832	-		Psyr_1492	0.77	+0.4
1,680,833	+		Psyr_1492	0.77	-1.3
1,680,833	+		Psyr_1492	0.77	+2.6
1,680,834	-		Psyr_1492	0.77	+0.8
1,680,914	+		Psyr_1492	0.86	-1.6
1,680,915	-		Psyr_1492	0.86	+0.9
1,680,915	-		Psyr_1492	0.86	+0.1
1,680,915	-		Psyr_1492	0.86	+1.7
1,680,996	+				+2.0
1,680,996	+				-2.5
1,680,996	+				-0.7
1,680,996	+				+0.3
1,680,996	+				+0.1
1,680,996	+				-1.7
1,680,996	+				+3.0
1,680,996	+				+3.4
1,680,996	+				+2.1
1,680,997	-				-3.2
1,680,997	-				+0.4
1,680,997	-				+0.3
1,680,997	-				-2.8
1,680,997	-				+1.4
1,680,997	-				-3.1
1,680,997	-				+2.3
1,681,035	+				+2.9
1,681,035	+				+2.9
1,681,035	+				+2.9
1,681,035	+				+0.1
1,681,035	+				+7.1
1,681,036	-				+2.2
1,681,037	+				+1.5
1,681,038	-				+1.1
1,681,047	+				-1.0
1,681,047	+				+0.6
1,681,047	+				+1.2
1,681,047	+				+1.3
1,681,048	-				+0.9
1,681,048	-				-1.2
1,681,048	-				+0.6
1,681,048	-				+0.3
1,681,048	-				+4.5
1,681,097	-				+0.8
1,681,126	+				-0.8
1,681,127	-				-1.2
1,681,133	+				-2.1
1,681,168	+				-1.2
1,681,168	+				+5.3
1,681,169	-				-0.1
1,681,169	-				+0.6
1,681,169	-				-1.3
1,681,169	-				+0.1
1,681,175	+				+0.6
1,681,175	+				-2.4
1,681,175	+				+2.3
1,681,175	+				+4.3
1,681,175	+				-2.4
1,681,175	+				+2.0
1,681,176	-				-2.5
1,681,176	-				-1.6
1,681,176	-				-2.1
1,681,176	-				-2.0
1,681,203	+				-0.9
1,681,211	-				+0.0
1,681,225	+				+0.1
1,681,225	+				-0.5
1,681,226	-				-2.1
1,681,226	-				-1.4
1,681,354	+				+3.9
1,681,354	+				-0.7
1,681,355	-				+0.9
1,681,355	-				-1.9
1,681,355	-				-2.2
1,681,376	-				-3.0
1,681,411	+				-2.2
1,681,412	-				-1.5
1,681,412	-				+1.2
1,681,412	-				+3.3
1,681,421	+				-0.6
1,681,457	+				-0.8
1,681,457	+				-0.3
1,681,457	+				-0.3
1,681,458	-				+0.5
1,681,467	+				-1.8
1,681,468	-				-1.3
1,681,468	-				-1.8
1,681,485	+				-1.2
1,681,485	+				-1.6
1,681,485	+				+1.1
1,681,485	+				+0.3
1,681,486	-				+0.3
1,681,486	-				+1.3
1,681,503	-				+1.0
1,681,542	+				-0.6
1,681,542	+				+0.2
1,681,543	-				+3.5
1,681,543	-				+2.8
1,681,577	+				-2.1
1,681,577	+				-2.1
1,681,577	+				+0.2
1,681,578	-				+0.6
1,681,578	-				-0.9
1,681,578	-				-3.2
1,681,578	-				-0.7
1,681,578	-				-3.0
1,681,578	-				-0.8
1,681,578	-				-3.8
1,681,657	+				+0.6
1,681,657	+				+1.2
1,681,668	+				+0.7
1,681,669	-				+0.9
1,681,814	+		Psyr_1493	0.16	-0.2
1,681,814	+		Psyr_1493	0.16	+2.9
1,681,815	-		Psyr_1493	0.16	+2.8
1,681,815	-		Psyr_1493	0.16	-1.2
1,681,815	-		Psyr_1493	0.16	+2.5
1,681,815	-		Psyr_1493	0.16	-0.6
1,681,815	-		Psyr_1493	0.16	+1.3
1,681,856	+		Psyr_1493	0.19	+0.0
1,681,857	-		Psyr_1493	0.19	-1.4
1,681,897	+		Psyr_1493	0.21	-0.1
1,681,897	+		Psyr_1493	0.21	-3.3
1,681,898	-		Psyr_1493	0.21	+0.9
1,681,898	-		Psyr_1493	0.21	+0.4
1,681,898	-		Psyr_1493	0.21	+2.1
1,681,898	-		Psyr_1493	0.21	-2.3
1,681,898	-		Psyr_1493	0.21	-0.9
1,681,898	-		Psyr_1493	0.21	+1.8
1,681,898	-		Psyr_1493	0.21	-1.5
1,681,904	-		Psyr_1493	0.21	+1.2
1,681,933	+		Psyr_1493	0.23	+1.2
1,681,933	+		Psyr_1493	0.23	-0.6
1,681,933	+		Psyr_1493	0.23	+1.0
1,681,933	+		Psyr_1493	0.23	+0.6
1,681,933	+		Psyr_1493	0.23	-0.5
1,681,933	+		Psyr_1493	0.23	+0.8
1,681,933	+		Psyr_1493	0.23	-0.4
1,681,933	+		Psyr_1493	0.23	-0.3
1,681,933	+		Psyr_1493	0.23	-2.0
1,681,933	+		Psyr_1493	0.23	+1.9
1,681,934	-		Psyr_1493	0.23	+0.9
1,681,934	-		Psyr_1493	0.23	+0.1
1,681,934	-		Psyr_1493	0.23	-0.2
1,681,934	-		Psyr_1493	0.23	+1.5
1,681,934	-		Psyr_1493	0.23	+1.2
1,681,934	-		Psyr_1493	0.23	+0.9
1,681,939	+		Psyr_1493	0.23	-1.3
1,681,940	-		Psyr_1493	0.23	-1.6
1,681,940	-		Psyr_1493	0.23	+0.7
1,681,978	+		Psyr_1493	0.25	-0.0
1,681,979	-		Psyr_1493	0.25	+0.8
1,682,023	+		Psyr_1493	0.28	-3.3
1,682,024	-		Psyr_1493	0.28	-1.7
1,682,024	-		Psyr_1493	0.28	-0.4