Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1469

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,655,383	+		Psyr_1467	0.70	+1.0
1,655,384	-		Psyr_1467	0.70	-1.0
1,655,387	-		Psyr_1467	0.71	+1.9
1,655,387	-		Psyr_1467	0.71	+1.3
1,655,387	-		Psyr_1467	0.71	-2.5
1,655,387	-		Psyr_1467	0.71	-0.1
1,655,441	-		Psyr_1467	0.80	-2.9
1,655,545	+				-2.5
1,655,568	+				+0.3
1,655,568	+				+0.6
1,655,569	-				+1.6
1,655,569	-				-2.9
1,655,593	+				-0.7
1,655,593	+				-0.6
1,655,597	-				+1.0
1,655,652	+				-1.0
1,655,671	-				-2.2
1,655,698	+		Psyr_1468	0.10	-0.1
1,655,698	+		Psyr_1468	0.10	-1.3
1,655,698	+		Psyr_1468	0.10	-0.6
1,655,698	+		Psyr_1468	0.10	-1.8
1,655,698	+		Psyr_1468	0.10	-2.7
1,655,699	-		Psyr_1468	0.11	+1.4
1,655,699	-		Psyr_1468	0.11	+1.3
1,655,707	-		Psyr_1468	0.13	-0.5
1,655,720	+		Psyr_1468	0.17	-0.4
1,655,720	+		Psyr_1468	0.17	-2.4
1,655,720	+		Psyr_1468	0.17	+0.6
1,655,721	-		Psyr_1468	0.17	-0.1
1,655,745	-		Psyr_1468	0.23	-1.6
1,655,793	+		Psyr_1468	0.37	-3.2
1,655,793	+		Psyr_1468	0.37	-2.4
1,655,794	-		Psyr_1468	0.37	+2.4
1,655,807	+		Psyr_1468	0.40	-2.3
1,655,808	-		Psyr_1468	0.41	-1.6
1,655,891	-		Psyr_1468	0.64	-2.2
1,655,995	+				-0.1
1,655,995	+				+1.7
1,655,995	+				+2.8
1,655,995	+				+1.8
1,655,995	+				-0.4
1,655,995	+				+1.0
1,655,995	+				+1.9
1,655,995	+				+0.7
1,655,996	-				-1.3
1,655,996	-				-1.3
1,655,996	-				-1.7
1,655,996	-				+0.1
1,655,996	-				-1.5
1,655,996	-				-2.3
1,655,996	-				+0.9
1,655,996	-				+0.3
1,655,996	-				+1.3
1,655,998	+				+1.0
1,655,998	+				-3.6
1,655,998	+				-0.4
1,655,998	+				+1.2
1,655,998	+				-1.0
1,655,998	+				+1.8
1,655,998	+				+0.4
1,655,998	+				-3.7
1,655,999	-				-2.3
1,655,999	-				-2.0
1,655,999	-				+1.6
1,655,999	-				+3.6
1,655,999	-				-2.4
1,655,999	-				-2.3
1,655,999	-				+2.5
1,655,999	-				+1.4
1,655,999	-				-2.3
1,656,121	+		Psyr_1469	0.12	-0.1
1,656,122	-		Psyr_1469	0.12	+2.6
1,656,122	-		Psyr_1469	0.12	-1.6
1,656,123	+		Psyr_1469	0.12	+1.9
1,656,123	+		Psyr_1469	0.12	+2.9
1,656,123	+		Psyr_1469	0.12	+0.1
1,656,123	+		Psyr_1469	0.12	+1.0
1,656,123	+		Psyr_1469	0.12	-1.3
1,656,123	+		Psyr_1469	0.12	+2.9
1,656,123	+		Psyr_1469	0.12	+2.4
1,656,123	+		Psyr_1469	0.12	-1.5
1,656,123	+		Psyr_1469	0.12	-2.5
1,656,123	+		Psyr_1469	0.12	+0.9
1,656,123	+		Psyr_1469	0.12	+2.9
1,656,123	+		Psyr_1469	0.12	-2.3
1,656,123	+		Psyr_1469	0.12	+0.3
1,656,123	+		Psyr_1469	0.12	+3.5
1,656,123	+		Psyr_1469	0.12	+1.9
1,656,124	-		Psyr_1469	0.13	-2.1
1,656,124	-		Psyr_1469	0.13	-1.4
1,656,124	-		Psyr_1469	0.13	-1.7
1,656,124	-		Psyr_1469	0.13	-2.7
1,656,124	-		Psyr_1469	0.13	+0.8
1,656,124	-		Psyr_1469	0.13	-0.4
1,656,124	-		Psyr_1469	0.13	+1.0
1,656,124	-		Psyr_1469	0.13	+0.2
1,656,124	-		Psyr_1469	0.13	-0.3
1,656,124	-		Psyr_1469	0.13	-0.4
1,656,124	-		Psyr_1469	0.13	-0.8
1,656,124	-		Psyr_1469	0.13	-0.1
1,656,124	-		Psyr_1469	0.13	+0.2
1,656,124	-				+0.9
1,656,124	-		Psyr_1469	0.13	-0.0
1,656,124	-		Psyr_1469	0.13	+0.5
1,656,124	-		Psyr_1469	0.13	-2.7
1,656,124	-		Psyr_1469	0.13	-1.0
1,656,124	-		Psyr_1469	0.13	-2.6
1,656,124	-		Psyr_1469	0.13	+0.0
1,656,124	-		Psyr_1469	0.13	+1.6
1,656,124	-		Psyr_1469	0.13	-1.3
1,656,124	-		Psyr_1469	0.13	+0.8
1,656,124	-		Psyr_1469	0.13	-1.2
1,656,124	-		Psyr_1469	0.13	+0.4
1,656,124	-		Psyr_1469	0.13	-2.6
1,656,124	-		Psyr_1469	0.13	+0.6
1,656,125	+				+1.3
1,656,125	+		Psyr_1469	0.13	+2.9
1,656,125	+		Psyr_1469	0.13	-1.0
1,656,125	+		Psyr_1469	0.13	+1.3
1,656,125	+		Psyr_1469	0.13	+2.7
1,656,125	+		Psyr_1469	0.13	+1.9
1,656,125	+		Psyr_1469	0.13	-1.0
1,656,125	+		Psyr_1469	0.13	-0.6
1,656,125	+		Psyr_1469	0.13	+0.1
1,656,126	-		Psyr_1469	0.13	-1.0
1,656,126	-		Psyr_1469	0.13	+0.8
1,656,126	-		Psyr_1469	0.13	+2.2
1,656,126	-		Psyr_1469	0.13	-0.8
1,656,126	-		Psyr_1469	0.13	-2.7
1,656,126	-		Psyr_1469	0.13	-3.0
1,656,126	-		Psyr_1469	0.13	+0.7
1,656,126	-		Psyr_1469	0.13	+1.3
1,656,126	-		Psyr_1469	0.13	-3.0
1,656,126	-		Psyr_1469	0.13	-0.6
1,656,126	-		Psyr_1469	0.13	+0.4
1,656,158	-		Psyr_1469	0.23	-2.7
1,656,187	+		Psyr_1469	0.32	+0.6
1,656,187	+		Psyr_1469	0.32	+1.2
1,656,187	+		Psyr_1469	0.32	-2.0
1,656,188	-		Psyr_1469	0.33	-2.9
1,656,188	-		Psyr_1469	0.33	-2.7
1,656,188	-		Psyr_1469	0.33	+0.7
1,656,188	-		Psyr_1469	0.33	-2.9
1,656,188	-		Psyr_1469	0.33	-3.2
1,656,188	-		Psyr_1469	0.33	-0.8
1,656,269	-		Psyr_1469	0.58	-3.3
1,656,320	-		Psyr_1469	0.74	-2.6
1,656,320	-		Psyr_1469	0.74	-0.9
1,656,320	-		Psyr_1469	0.74	-1.8
1,656,323	+		Psyr_1469	0.75	-0.2
1,656,323	+		Psyr_1469	0.75	-0.6
1,656,326	+		Psyr_1469	0.76	+1.1
1,656,378	+				+0.3
1,656,379	-				+0.9
1,656,383	+				-1.6
1,656,383	+				-2.0
1,656,386	+				+0.4
1,656,389	+				-3.0
1,656,390	-				-3.6
1,656,414	-				+1.1
1,656,415	+				-0.1
1,656,416	-				+1.7
1,656,416	-				-2.0
1,656,459	-				-0.0
1,656,467	+				-3.5
1,656,468	-				-0.4
1,656,468	-				+0.5
1,656,490	-				+1.4
1,656,490	-				+3.4
1,656,544	+				-0.4
1,656,597	+				-3.8
1,656,640	+				+0.5
1,656,641	-				-3.4
1,656,687	+				-0.7
1,656,697	-				-3.5
1,656,754	+				+0.6
1,656,763	+		Psyr_1470	0.11	-0.6
1,656,894	+		Psyr_1470	0.34	-2.3
1,656,894	+		Psyr_1470	0.34	+1.5
1,656,894	+		Psyr_1470	0.34	+1.3
1,656,894	+		Psyr_1470	0.34	-2.0
1,656,894	+		Psyr_1470	0.34	+1.8
1,656,894	+		Psyr_1470	0.34	-1.8
1,656,894	+		Psyr_1470	0.34	-2.9
1,656,895	-		Psyr_1470	0.34	+1.2
1,656,895	-		Psyr_1470	0.34	+0.7
1,656,895	-		Psyr_1470	0.34	-0.4
1,656,895	-		Psyr_1470	0.34	+2.1
1,656,895	-		Psyr_1470	0.34	+3.6
1,656,895	-		Psyr_1470	0.34	-2.0
1,656,895	-		Psyr_1470	0.34	-3.0
1,656,924	+		Psyr_1470	0.39	+0.2
1,656,924	+		Psyr_1470	0.39	-1.1
1,656,925	-		Psyr_1470	0.40	+0.2
1,656,967	+		Psyr_1470	0.47	-1.7
1,656,967	+		Psyr_1470	0.47	-2.2
1,656,968	-		Psyr_1470	0.47	-0.4
1,656,981	+		Psyr_1470	0.49	-3.5
1,656,982	-		Psyr_1470	0.50	+1.0
1,656,982	-		Psyr_1470	0.50	+2.1
1,656,982	-		Psyr_1470	0.50	-2.5
1,656,982	-		Psyr_1470	0.50	+1.4
1,656,982	-		Psyr_1470	0.50	+0.5
1,656,982	-		Psyr_1470	0.50	-3.0
1,656,982	-		Psyr_1470	0.50	+0.7
1,656,982	-		Psyr_1470	0.50	+3.0
1,656,986	-		Psyr_1470	0.50	-0.6
1,657,069	+		Psyr_1470	0.65	+0.4
1,657,070	-		Psyr_1470	0.65	-2.7
1,657,110	+		Psyr_1470	0.72	-1.6
1,657,110	+		Psyr_1470	0.72	-3.4
1,657,110	+		Psyr_1470	0.72	+1.1
1,657,110	+		Psyr_1470	0.72	+0.3
1,657,110	+		Psyr_1470	0.72	+1.8
1,657,111	-		Psyr_1470	0.72	-0.9
1,657,111	-		Psyr_1470	0.72	+0.3
1,657,111	-		Psyr_1470	0.72	+3.1
1,657,111	-		Psyr_1470	0.72	-0.1
1,657,116	+		Psyr_1470	0.73	+1.2
1,657,116	+		Psyr_1470	0.73	+0.5
1,657,117	-		Psyr_1470	0.73	-1.7
1,657,117	-		Psyr_1470	0.73	-0.1
1,657,151	+		Psyr_1470	0.79	-0.7
1,657,151	+		Psyr_1470	0.79	-0.3
1,657,152	-		Psyr_1470	0.79	-2.7
1,657,152	-		Psyr_1470	0.79	-0.8
1,657,152	-		Psyr_1470	0.79	+2.1
1,657,152	-		Psyr_1470	0.79	-0.9
1,657,152	-		Psyr_1470	0.79	+0.0
1,657,180	+		Psyr_1470	0.84	-0.3
1,657,180	+		Psyr_1470	0.84	-1.0
1,657,242	+				+0.4
1,657,243	-				-2.2
1,657,243	-				+1.5
1,657,243	-				+1.6
1,657,258	+				-0.1
1,657,275	+				-2.0
1,657,275	+				-2.6
1,657,275	+				-3.2
1,657,275	+				-2.1
1,657,275	+				-1.3
1,657,275	+				+1.8
1,657,276	-				+0.3
1,657,276	-				-0.8
1,657,276	-				-1.1
1,657,276	-				+0.7
1,657,276	-				-3.7
1,657,276	-				+1.9
1,657,276	-				-0.3
1,657,276	-				-1.5
1,657,306	+				-0.7
1,657,306	+				+0.1
1,657,306	+				-1.6
1,657,306	+				+1.4
1,657,307	-				-2.2
1,657,307	-				+1.5
1,657,307	-				+0.8
1,657,307	-				+1.2
1,657,328	+				+2.1
1,657,329	-				+1.3
1,657,390	+		Psyr_1471	0.19	-1.1
1,657,391	-		Psyr_1471	0.19	-0.7
1,657,396	+		Psyr_1471	0.20	-0.1