Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1465

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,652,683	+		Psyr_1464	0.34	-1.0
1,652,683	+		Psyr_1464	0.34	+1.6
1,652,683	+		Psyr_1464	0.34	+0.6
1,652,683	+		Psyr_1464	0.34	+5.1
1,652,683	+		Psyr_1464	0.34	+1.8
1,652,683	+		Psyr_1464	0.34	+0.6
1,652,683	+		Psyr_1464	0.34	+1.8
1,652,683	+		Psyr_1464	0.34	-0.2
1,652,683	+		Psyr_1464	0.34	-3.6
1,652,683	+		Psyr_1464	0.34	-1.0
1,652,683	+		Psyr_1464	0.34	+0.3
1,652,683	+		Psyr_1464	0.34	+0.1
1,652,684	-		Psyr_1464	0.34	-1.6
1,652,684	-		Psyr_1464	0.34	-1.5
1,652,684	-		Psyr_1464	0.34	-1.6
1,652,684	-		Psyr_1464	0.34	-1.7
1,652,684	-		Psyr_1464	0.34	+1.2
1,652,684	-		Psyr_1464	0.34	+0.4
1,652,684	-		Psyr_1464	0.34	-1.0
1,652,684	-		Psyr_1464	0.34	-0.6
1,652,684	-		Psyr_1464	0.34	+0.1
1,652,684	-		Psyr_1464	0.34	+0.5
1,652,684	-		Psyr_1464	0.34	+0.4
1,652,684	-		Psyr_1464	0.34	-0.7
1,652,686	-		Psyr_1464	0.34	+0.7
1,652,730	+		Psyr_1464	0.37	-1.5
1,652,730	+		Psyr_1464	0.37	-3.5
1,652,730	+		Psyr_1464	0.37	+1.8
1,652,731	-		Psyr_1464	0.37	+1.4
1,652,731	-		Psyr_1464	0.37	+4.3
1,652,739	+		Psyr_1464	0.38	-3.4
1,652,740	-		Psyr_1464	0.38	+0.9
1,652,740	-		Psyr_1464	0.38	+1.2
1,652,847	+		Psyr_1464	0.45	-0.4
1,652,905	+		Psyr_1464	0.49	+0.5
1,652,906	-		Psyr_1464	0.49	+1.0
1,652,944	+		Psyr_1464	0.52	+0.1
1,652,944	+		Psyr_1464	0.52	-1.2
1,652,944	+		Psyr_1464	0.52	+3.7
1,652,945	-		Psyr_1464	0.52	+0.9
1,652,945	-		Psyr_1464	0.52	-0.7
1,652,945	-		Psyr_1464	0.52	+1.1
1,652,945	-		Psyr_1464	0.52	+1.2
1,653,013	+		Psyr_1464	0.56	-2.3
1,653,013	+		Psyr_1464	0.56	-0.1
1,653,013	+		Psyr_1464	0.56	-0.8
1,653,014	-		Psyr_1464	0.57	+0.3
1,653,014	-		Psyr_1464	0.57	-1.5
1,653,064	-		Psyr_1464	0.60	+1.8
1,653,175	+		Psyr_1464	0.68	-1.3
1,653,175	+		Psyr_1464	0.68	-1.7
1,653,175	+		Psyr_1464	0.68	-1.9
1,653,176	-		Psyr_1464	0.68	-0.0
1,653,176	-		Psyr_1464	0.68	+0.7
1,653,176	-		Psyr_1464	0.68	-0.7
1,653,176	-		Psyr_1464	0.68	-0.6
1,653,192	+		Psyr_1464	0.69	-1.6
1,653,192	+		Psyr_1464	0.69	+0.9
1,653,192	+		Psyr_1464	0.69	-0.3
1,653,192	+		Psyr_1464	0.69	-0.1
1,653,193	-		Psyr_1464	0.69	+1.8
1,653,193	-		Psyr_1464	0.69	-2.6
1,653,193	-		Psyr_1464	0.69	-1.3
1,653,193	-		Psyr_1464	0.69	+1.5
1,653,193	-		Psyr_1464	0.69	+2.0
1,653,235	+		Psyr_1464	0.72	-1.8
1,653,275	-		Psyr_1464	0.75	+0.5
1,653,313	+		Psyr_1464	0.77	-2.7
1,653,442	+		Psyr_1464	0.86	-2.9
1,653,442	+		Psyr_1464	0.86	-1.2
1,653,442	+		Psyr_1464	0.86	+2.1
1,653,443	-		Psyr_1464	0.86	-0.6
1,653,443	-		Psyr_1464	0.86	-0.4
1,653,443	-		Psyr_1464	0.86	-2.1
1,653,443	-		Psyr_1464	0.86	-1.3
1,653,443	-		Psyr_1464	0.86	+0.7
1,653,443	-		Psyr_1464	0.86	-1.8
1,653,595	+				-1.5
1,653,596	-				-1.6
1,653,675	+				+1.5
1,653,675	+				-3.2
1,653,675	+				-0.0
1,653,675	+				+1.5
1,653,675	+				-0.3
1,653,782	-		Psyr_1465	0.18	+2.7
1,653,782	-		Psyr_1465	0.18	-2.3
1,653,871	+		Psyr_1465	0.33	-1.9
1,653,871	+		Psyr_1465	0.33	-2.9
1,653,871	+		Psyr_1465	0.33	+0.3
1,653,871	+		Psyr_1465	0.33	-1.7
1,653,871	+		Psyr_1465	0.33	+1.0
1,653,871	+		Psyr_1465	0.33	-1.4
1,653,871	+		Psyr_1465	0.33	+0.8
1,653,872	-		Psyr_1465	0.33	-1.2
1,653,872	-		Psyr_1465	0.33	+0.3
1,653,872	-		Psyr_1465	0.33	-3.0
1,653,872	-		Psyr_1465	0.33	-2.4
1,653,875	+		Psyr_1465	0.34	-1.9
1,653,875	+		Psyr_1465	0.34	-1.7
1,653,875	+		Psyr_1465	0.34	-0.3
1,653,875	+		Psyr_1465	0.34	+0.5
1,653,875	+		Psyr_1465	0.34	-1.3
1,653,875	+		Psyr_1465	0.34	-0.1
1,653,876	-		Psyr_1465	0.34	-2.1
1,653,895	+		Psyr_1465	0.37	-0.8
1,653,983	+		Psyr_1465	0.52	-2.3
1,653,983	+		Psyr_1465	0.52	+1.5
1,653,983	+		Psyr_1465	0.52	-0.1
1,653,983	+		Psyr_1465	0.52	-2.9
1,653,983	+		Psyr_1465	0.52	+1.0
1,653,983	+		Psyr_1465	0.52	-1.0
1,653,983	+		Psyr_1465	0.52	-0.1
1,653,983	+		Psyr_1465	0.52	-0.8
1,653,984	-		Psyr_1465	0.52	-0.5
1,653,984	-		Psyr_1465	0.52	-1.7
1,653,984	-		Psyr_1465	0.52	-3.4
1,653,984	-		Psyr_1465	0.52	-1.7
1,653,984	-		Psyr_1465	0.52	-2.8
1,653,984	-		Psyr_1465	0.52	-0.5
1,654,184	+		Psyr_1465	0.85	+0.1
1,654,185	-				-0.4
1,654,185	-		Psyr_1465	0.85	+1.9
1,654,185	-		Psyr_1465	0.85	+4.9
1,654,224	+				+0.3
1,654,224	+				-1.2
1,654,224	+				-0.6
1,654,225	-				-3.0
1,654,225	-				+0.4
1,654,225	-				-0.0
1,654,225	-				+0.4
1,654,225	-				-0.8
1,654,274	+				-3.1
1,654,274	+				+1.2
1,654,274	+				-3.1
1,654,274	+				+0.5
1,654,275	-				-2.9
1,654,396	-		Psyr_1466	0.11	+1.9
1,654,438	-		Psyr_1466	0.19	+2.6
1,654,472	+		Psyr_1466	0.25	+0.3
1,654,473	-		Psyr_1466	0.25	-0.6
1,654,473	-		Psyr_1466	0.25	-1.8
1,654,485	+		Psyr_1466	0.28	+0.6
1,654,486	-		Psyr_1466	0.28	+0.9
1,654,486	-		Psyr_1466	0.28	+1.0
1,654,572	+		Psyr_1466	0.44	-1.2
1,654,572	+		Psyr_1466	0.44	-1.0
1,654,572	+		Psyr_1466	0.44	+0.8
1,654,572	+		Psyr_1466	0.44	-1.2
1,654,572	+		Psyr_1466	0.44	-0.1
1,654,572	+		Psyr_1466	0.44	+1.0
1,654,573	-		Psyr_1466	0.44	+1.5
1,654,573	-		Psyr_1466	0.44	-1.5
1,654,573	-		Psyr_1466	0.44	-3.1
1,654,573	-		Psyr_1466	0.44	-0.3
1,654,573	-		Psyr_1466	0.44	-2.5
1,654,573	-		Psyr_1466	0.44	+0.4
1,654,573	-		Psyr_1466	0.44	+0.9
1,654,573	-		Psyr_1466	0.44	+1.7
1,654,573	-		Psyr_1466	0.44	-1.5
1,654,573	-		Psyr_1466	0.44	-0.3
1,654,573	-		Psyr_1466	0.44	-0.1
1,654,574	+		Psyr_1466	0.45	-1.1
1,654,574	+		Psyr_1466	0.45	-0.5
1,654,574	+		Psyr_1466	0.45	-1.0
1,654,574	+		Psyr_1466	0.45	-0.9
1,654,574	+		Psyr_1466	0.45	+0.2
1,654,574	+		Psyr_1466	0.45	-0.2
1,654,574	+		Psyr_1466	0.45	-1.7
1,654,574	+		Psyr_1466	0.45	-1.7
1,654,574	+		Psyr_1466	0.45	+0.7
1,654,575	-		Psyr_1466	0.45	+0.4
1,654,575	-		Psyr_1466	0.45	-1.2
1,654,575	-		Psyr_1466	0.45	-0.8
1,654,575	-		Psyr_1466	0.45	+1.9
1,654,575	-		Psyr_1466	0.45	-0.3
1,654,575	-		Psyr_1466	0.45	-0.3
1,654,580	+		Psyr_1466	0.46	-1.0
1,654,580	+		Psyr_1466	0.46	+0.6
1,654,660	-		Psyr_1466	0.61	+1.8
1,654,685	+		Psyr_1466	0.66	-1.3
1,654,685	+		Psyr_1466	0.66	+1.5
1,654,736	+		Psyr_1466	0.75	-2.6
1,654,736	+		Psyr_1466	0.75	-0.2
1,654,736	+		Psyr_1466	0.75	+0.1
1,654,736	+		Psyr_1466	0.75	-0.0
1,654,736	+		Psyr_1466	0.75	-4.1
1,654,737	-		Psyr_1466	0.76	-0.7
1,654,737	-		Psyr_1466	0.76	-2.4
1,654,843	+				+1.5
1,654,843	+				-2.8
1,654,844	-				-2.7
1,654,844	-				-3.4
1,654,847	+				+1.3
1,654,881	+				+1.6
1,654,882	-				-2.3
1,654,884	+				+1.3
1,654,884	+				-1.5
1,654,885	-				-0.7
1,654,885	-				+3.1
1,654,921	+				-1.4
1,654,921	+				+1.1
1,654,921	+				-0.3
1,654,921	+				+1.9
1,654,921	+				-0.4
1,654,922	-				-1.3
1,654,922	-				+0.0
1,654,922	-				+1.1
1,654,922	-				+1.4
1,654,922	-				-0.1
1,654,922	-				+0.8
1,654,928	-				+0.3
1,654,957	+				+0.9
1,654,957	+				-0.7
1,654,957	+				-0.2
1,654,957	+				-3.1
1,655,049	+		Psyr_1467	0.16	+0.3
1,655,049	+		Psyr_1467	0.16	+0.3
1,655,049	+		Psyr_1467	0.16	+1.1
1,655,050	-		Psyr_1467	0.16	-0.0