Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1422

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,608,424	+		Psyr_1421	0.33	-0.2
1,608,424	+		Psyr_1421	0.33	-2.2
1,608,424	+		Psyr_1421	0.33	-2.1
1,608,424	+		Psyr_1421	0.33	-3.4
1,608,424	+		Psyr_1421	0.33	+0.6
1,608,762	-		Psyr_1421	0.57	+1.9
1,608,772	-		Psyr_1421	0.57	+2.2
1,608,916	+		Psyr_1421	0.68	-0.1
1,608,959	+		Psyr_1421	0.71	-3.4
1,609,017	-		Psyr_1421	0.75	+1.2
1,609,017	-		Psyr_1421	0.75	+1.0
1,609,133	-		Psyr_1421	0.83	+1.6
1,609,133	-		Psyr_1421	0.83	-0.2
1,609,138	+		Psyr_1421	0.83	-1.1
1,609,138	+		Psyr_1421	0.83	-0.3
1,609,138	+		Psyr_1421	0.83	-0.4
1,609,138	+		Psyr_1421	0.83	+0.7
1,609,138	+		Psyr_1421	0.83	+2.1
1,609,138	+		Psyr_1421	0.83	+0.6
1,609,139	-		Psyr_1421	0.84	-0.8
1,609,139	-		Psyr_1421	0.84	+0.5
1,609,139	-		Psyr_1421	0.84	-1.2
1,609,139	-		Psyr_1421	0.84	+2.1
1,609,139	-		Psyr_1421	0.84	+1.1
1,609,139	-		Psyr_1421	0.84	-1.0
1,609,139	-		Psyr_1421	0.84	+0.4
1,609,139	-		Psyr_1421	0.84	+0.5
1,609,163	-		Psyr_1421	0.85	-2.9
1,609,163	-		Psyr_1421	0.85	+1.9
1,609,616	+		Psyr_1422	0.13	-1.4
1,609,617	-		Psyr_1422	0.13	-0.2
1,609,617	-		Psyr_1422	0.13	-0.1
1,609,780	+		Psyr_1422	0.22	-2.6
1,609,874	-		Psyr_1422	0.27	-0.5
1,610,026	+		Psyr_1422	0.35	-0.3
1,610,026	+		Psyr_1422	0.35	-1.4
1,610,026	+		Psyr_1422	0.35	+1.1
1,610,372	+		Psyr_1422	0.53	-0.7
1,610,372	+		Psyr_1422	0.53	+0.9
1,610,372	+		Psyr_1422	0.53	+1.9
1,610,372	+		Psyr_1422	0.53	+1.6
1,610,372	+		Psyr_1422	0.53	-1.5
1,610,373	-		Psyr_1422	0.53	-2.0
1,610,373	-		Psyr_1422	0.53	+2.0
1,610,373	-		Psyr_1422	0.53	-0.4
1,610,394	-		Psyr_1422	0.54	-1.9
1,610,521	+		Psyr_1422	0.61	-0.5
1,610,521	+		Psyr_1422	0.61	+1.3
1,610,521	+		Psyr_1422	0.61	-1.5
1,610,522	-		Psyr_1422	0.61	-0.7
1,610,542	+		Psyr_1422	0.62	-2.9
1,610,542	+		Psyr_1422	0.62	-0.9
1,610,542	+		Psyr_1422	0.62	-0.2
1,610,542	+		Psyr_1422	0.62	+0.8
1,610,542	+		Psyr_1422	0.62	-3.2
1,610,543	-		Psyr_1422	0.62	-1.9
1,610,543	-		Psyr_1422	0.62	-2.6
1,610,543	-		Psyr_1422	0.62	-1.8
1,610,543	-		Psyr_1422	0.62	-1.7
1,610,543	-		Psyr_1422	0.62	-2.7
1,610,543	-		Psyr_1422	0.62	-0.5
1,610,543	-		Psyr_1422	0.62	-2.3
1,610,543	-		Psyr_1422	0.62	-1.2
1,610,631	+		Psyr_1422	0.66	-0.4
1,610,631	+		Psyr_1422	0.66	+0.6
1,610,721	+		Psyr_1422	0.71	-1.0
1,610,721	+		Psyr_1422	0.71	-2.3
1,610,721	+		Psyr_1422	0.71	+0.9
1,610,721	+		Psyr_1422	0.71	-1.7
1,610,722	-		Psyr_1422	0.71	-1.2
1,610,722	-		Psyr_1422	0.71	-0.2
1,610,722	-		Psyr_1422	0.71	-1.8
1,610,722	-		Psyr_1422	0.71	-1.7
1,610,773	-		Psyr_1422	0.74	-2.1
1,610,773	-		Psyr_1422	0.74	-2.2
1,610,773	-		Psyr_1422	0.74	-2.2
1,610,961	+		Psyr_1422	0.84	+0.6
1,610,961	+		Psyr_1422	0.84	-0.2
1,610,961	+		Psyr_1422	0.84	-2.5
1,610,961	+		Psyr_1422	0.84	-0.4
1,610,961	+		Psyr_1422	0.84	-2.2
1,610,961	+		Psyr_1422	0.84	-0.7
1,610,961	+		Psyr_1422	0.84	-1.1
1,610,961	+		Psyr_1422	0.84	+3.1
1,610,961	+		Psyr_1422	0.84	-2.8
1,610,962	-		Psyr_1422	0.84	-0.9
1,610,962	-		Psyr_1422	0.84	+0.0
1,610,962	-		Psyr_1422	0.84	-1.5
1,610,962	-		Psyr_1422	0.84	-1.1
1,610,962	-		Psyr_1422	0.84	-1.5
1,610,973	-		Psyr_1422	0.84	-2.3
1,610,977	+		Psyr_1422	0.85	-0.7
1,610,977	+		Psyr_1422	0.85	-2.0
1,610,977	+		Psyr_1422	0.85	-3.1
1,610,977	+		Psyr_1422	0.85	-2.9
1,610,977	+		Psyr_1422	0.85	+2.1
1,610,978	-		Psyr_1422	0.85	-2.9
1,610,978	-		Psyr_1422	0.85	-1.9
1,610,978	-		Psyr_1422	0.85	-1.6
1,611,027	+		Psyr_1422	0.87	-1.3
1,611,028	-		Psyr_1422	0.87	-0.9
1,611,028	-		Psyr_1422	0.87	-1.0
1,611,028	-		Psyr_1422	0.87	-2.1
1,611,078	+		Psyr_1422	0.90	-2.1
1,611,078	+		Psyr_1422	0.90	-0.5
1,611,078	+		Psyr_1422	0.90	+1.2
1,611,079	-		Psyr_1422	0.90	-1.2
1,611,079	-		Psyr_1422	0.90	-3.3
1,611,099	+				-3.5
1,611,099	+				-0.7
1,611,099	+				+1.5
1,611,099	+				+0.2
1,611,099	+				-2.0
1,611,099	+				+2.6
1,611,265	+				+1.0
1,611,266	-				-1.7
1,611,266	-				-0.2
1,611,266	-				-1.5
1,611,274	-				+1.0
1,611,274	-				+0.6
1,611,274	-				-0.2
1,611,274	-				+0.0
1,611,274	-				+0.7
1,611,274	-				-0.2
1,611,274	-				-1.8
1,611,274	-				-2.5
1,611,313	-				-1.3
1,611,313	-				+0.7
1,611,313	-				+0.6
1,611,314	+				-3.1
1,611,314	+				-0.8
1,611,314	+				-1.2
1,611,315	-				+0.4
1,611,315	-				+0.6
1,611,315	-				+0.2
1,611,315	-				+1.1
1,611,315	-				+1.8
1,611,341	+				-1.8
1,611,341	+				+0.9
1,611,341	+				+0.6
1,611,341	+				+1.5
1,611,341	+				-0.4
1,611,341	+				+0.3
1,611,341	+				-1.9
1,611,341	+				-0.5
1,611,341	+				+2.6
1,611,341	+				-0.5
1,611,341	+				+0.6
1,611,341	+				+1.5
1,611,341	+				-3.1
1,611,341	+				+2.6
1,611,361	+				-1.9
1,611,361	+				+1.9
1,611,362	-				+0.8
1,611,362	-				+1.7
1,611,363	+				-1.8
1,611,363	+				-0.7
1,611,363	+				+0.7
1,611,364	-				-2.5
1,611,364	-				+1.3
1,611,364	-				+0.6
1,611,365	+				-0.5
1,611,365	+				+0.1
1,611,365	+				-3.6
1,611,365	+				+2.2
1,611,365	+				+3.0
1,611,365	+				-1.7
1,611,365	+				-2.3
1,611,365	+				+0.9
1,611,365	+				-1.1
1,611,365	+				-0.9
1,611,365	+				-0.9
1,611,365	+				-2.8
1,611,365	+				-1.7
1,611,365	+				-1.4
1,611,365	+				+1.8
1,611,365	+				-0.8
1,611,365	+				-1.4
1,611,365	+				-1.4
1,611,365	+				-1.1
1,611,365	+				-2.0
1,611,365	+				-0.4
1,611,365	+				-1.2
1,611,365	+				+3.7
1,611,366	-				-0.1
1,611,366	-				+0.1
1,611,366	-				+0.1
1,611,366	-				+1.2
1,611,366	-				+2.0
1,611,366	-				-2.3
1,611,366	-				+0.5
1,611,366	-				+1.9
1,611,366	-				+1.6
1,611,366	-				+1.8
1,611,366	-				-1.6
1,611,366	-				+0.3
1,611,366	-				-1.3
1,611,366	-				-0.0
1,611,366	-				+1.1
1,611,366	-				-1.4
1,611,366	-				+2.1
1,611,366	-				+0.5
1,611,366	-				-2.1
1,611,366	-				-1.7
1,611,366	-				-1.5
1,611,366	-				-0.1
1,611,369	+				-1.0
1,611,369	+				-1.5
1,611,369	+				-2.0
1,611,369	+				+0.9
1,611,369	+				-2.6
1,611,370	-				+2.1
1,611,370	-				-3.2
1,611,370	-				-2.5
1,611,370	-				+0.8
1,611,461	-				-0.5
1,611,563	-				-0.7
1,611,563	-				-2.0
1,611,639	+				-1.2
1,611,639	+				+2.2
1,611,640	-				-0.8
1,611,640	-				-0.8
1,611,640	-				-0.7
1,611,640	-				-1.5
1,611,834	+		Psyr_1423	0.19	-1.1
1,611,834	+		Psyr_1423	0.19	-0.7
1,611,834	+		Psyr_1423	0.19	-2.4
1,611,834	+		Psyr_1423	0.19	+1.2
1,612,002	+		Psyr_1423	0.44	-2.3
1,612,002	+		Psyr_1423	0.44	+1.7
1,612,002	+		Psyr_1423	0.44	+1.1
1,612,003	-		Psyr_1423	0.44	+1.0
1,612,003	-		Psyr_1423	0.44	+0.3
1,612,003	-		Psyr_1423	0.44	+2.6
1,612,012	-		Psyr_1423	0.45	+1.6
1,612,012	-		Psyr_1423	0.45	+0.3
1,612,032	-		Psyr_1423	0.48	-0.7
1,612,032	-		Psyr_1423	0.48	+3.7