Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0615

Experiment: library passed through aphids in food, 72 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0613 and Psyr_0614 are separated by 7 nucleotidesPsyr_0614 and Psyr_0615 are separated by 5 nucleotidesPsyr_0615 and Psyr_0616 overlap by 4 nucleotidesPsyr_0616 and Psyr_0617 are separated by 2 nucleotides Psyr_0613: Psyr_0613 - conserved hypothetical protein, at 702,841 to 703,455 _0613 Psyr_0614: Psyr_0614 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 703,463 to 704,101 _0614 Psyr_0615: Psyr_0615 - conserved hypothetical protein, at 704,107 to 704,829 _0615 Psyr_0616: Psyr_0616 - conserved domain protein, at 704,826 to 705,146 _0616 Psyr_0617: Psyr_0617 - conserved hypothetical protein, at 705,149 to 706,924 _0617 Position (kb) 704 705Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 703.120 kb on - strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.416 kb on + strandat 703.417 kb on - strandat 703.523 kb on + strandat 703.523 kb on + strandat 703.523 kb on + strandat 703.524 kb on - strandat 703.691 kb on + strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.742 kb on + strand, within Psyr_0614at 703.772 kb on + strand, within Psyr_0614at 703.847 kb on + strand, within Psyr_0614at 703.847 kb on + strand, within Psyr_0614at 703.847 kb on + strand, within Psyr_0614at 703.848 kb on - strand, within Psyr_0614at 703.848 kb on - strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.909 kb on + strand, within Psyr_0614at 704.037 kb on + strand, within Psyr_0614at 704.038 kb on - strandat 704.038 kb on - strandat 704.038 kb on - strandat 704.112 kb on + strandat 704.112 kb on + strandat 704.173 kb on + strandat 704.174 kb on - strandat 704.185 kb on + strand, within Psyr_0615at 704.185 kb on + strand, within Psyr_0615at 704.185 kb on + strand, within Psyr_0615at 704.186 kb on - strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.217 kb on - strand, within Psyr_0615at 704.231 kb on + strand, within Psyr_0615at 704.333 kb on + strand, within Psyr_0615at 704.333 kb on + strand, within Psyr_0615at 704.334 kb on - strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.614 kb on + strand, within Psyr_0615at 704.614 kb on + strand, within Psyr_0615at 704.614 kb on + strand, within Psyr_0615at 704.615 kb on - strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.928 kb on + strand, within Psyr_0616at 704.928 kb on + strand, within Psyr_0616at 704.929 kb on - strand, within Psyr_0616at 704.929 kb on - strand, within Psyr_0616at 704.929 kb on - strand, within Psyr_0616at 705.135 kb on + strandat 705.135 kb on + strandat 705.135 kb on + strandat 705.135 kb on + strandat 705.135 kb on + strandat 705.136 kb on - strandat 705.136 kb on - strandat 705.136 kb on - strandat 705.188 kb on + strandat 705.189 kb on - strandat 705.189 kb on - strandat 705.189 kb on - strandat 705.192 kb on + strandat 705.228 kb on + strandat 705.339 kb on - strand, within Psyr_0617at 705.339 kb on - strand, within Psyr_0617at 705.339 kb on - strand, within Psyr_0617at 705.350 kb on - strand, within Psyr_0617at 705.350 kb on - strand, within Psyr_0617at 705.350 kb on - strand, within Psyr_0617at 705.353 kb on + strand, within Psyr_0617at 705.354 kb on - strand, within Psyr_0617at 705.354 kb on - strand, within Psyr_0617at 705.354 kb on - strand, within Psyr_0617at 705.362 kb on + strand, within Psyr_0617at 705.442 kb on - strand, within Psyr_0617at 705.473 kb on + strand, within Psyr_0617at 705.473 kb on + strand, within Psyr_0617at 705.488 kb on + strand, within Psyr_0617at 705.488 kb on + strand, within Psyr_0617at 705.488 kb on + strand, within Psyr_0617at 705.489 kb on - strand, within Psyr_0617at 705.489 kb on - strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.539 kb on + strand, within Psyr_0617at 705.540 kb on - strand, within Psyr_0617at 705.540 kb on - strand, within Psyr_0617at 705.540 kb on - strand, within Psyr_0617at 705.540 kb on - strand, within Psyr_0617at 705.549 kb on + strand, within Psyr_0617at 705.684 kb on + strand, within Psyr_0617at 705.684 kb on + strand, within Psyr_0617at 705.684 kb on + strand, within Psyr_0617at 705.685 kb on - strand, within Psyr_0617at 705.709 kb on + strand, within Psyr_0617at 705.710 kb on - strand, within Psyr_0617at 705.710 kb on - strand, within Psyr_0617at 705.719 kb on + strand, within Psyr_0617

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
remove
703,120 - Psyr_0613 0.45 -0.0
703,189 + Psyr_0613 0.57 +0.9
703,189 + Psyr_0613 0.57 +0.9
703,189 + Psyr_0613 0.57 +1.2
703,189 + Psyr_0613 0.57 -2.1
703,189 + Psyr_0613 0.57 +1.1
703,189 + Psyr_0613 0.57 +0.9
703,190 - Psyr_0613 0.57 +0.3
703,190 - Psyr_0613 0.57 -0.9
703,190 - Psyr_0613 0.57 -2.8
703,190 - Psyr_0613 0.57 +0.3
703,190 - Psyr_0613 0.57 +1.8
703,190 - Psyr_0613 0.57 +1.1
703,190 - Psyr_0613 0.57 -1.5
703,416 + +3.1
703,417 - -0.7
703,523 + -1.4
703,523 + +1.0
703,523 + -1.3
703,524 - +1.9
703,691 + Psyr_0614 0.36 -2.9
703,692 - Psyr_0614 0.36 +1.7
703,692 - Psyr_0614 0.36 -2.4
703,742 + Psyr_0614 0.44 +0.1
703,772 + Psyr_0614 0.48 -0.1
703,847 + Psyr_0614 0.60 -2.7
703,847 + Psyr_0614 0.60 +0.9
703,847 + Psyr_0614 0.60 -1.8
703,848 - Psyr_0614 0.60 +0.2
703,848 - Psyr_0614 0.60 -1.6
703,907 + Psyr_0614 0.69 +3.1
703,907 + Psyr_0614 0.69 +0.6
703,907 + Psyr_0614 0.69 -2.4
703,907 + Psyr_0614 0.69 +1.8
703,907 + Psyr_0614 0.69 -0.2
703,907 + Psyr_0614 0.69 -0.5
703,907 + Psyr_0614 0.69 +0.4
703,907 + Psyr_0614 0.69 +1.5
703,907 + Psyr_0614 0.69 +0.7
703,907 + Psyr_0614 0.69 -2.7
703,907 + Psyr_0614 0.69 -0.5
703,907 + Psyr_0614 0.69 +1.1
703,907 + Psyr_0614 0.69 +0.4
703,907 + Psyr_0614 0.69 -0.6
703,907 + Psyr_0614 0.69 +0.2
703,908 - Psyr_0614 0.70 -0.3
703,908 - Psyr_0614 0.70 -2.3
703,908 - Psyr_0614 0.70 -0.5
703,908 - Psyr_0614 0.70 -0.9
703,908 - Psyr_0614 0.70 +1.5
703,908 - Psyr_0614 0.70 -2.8
703,908 - Psyr_0614 0.70 -1.7
703,908 - Psyr_0614 0.70 -1.3
703,908 - Psyr_0614 0.70 +1.9
703,908 - Psyr_0614 0.70 +1.6
703,908 - Psyr_0614 0.70 -2.4
703,908 - Psyr_0614 0.70 -2.9
703,908 - Psyr_0614 0.70 -0.7
703,908 - Psyr_0614 0.70 -1.2
703,908 - Psyr_0614 0.70 -0.2
703,909 + Psyr_0614 0.70 -0.1
704,037 + Psyr_0614 0.90 -1.6
704,038 - +1.3
704,038 - -1.8
704,038 - +2.5
704,112 + +1.9
704,112 + +0.5
704,173 + -2.6
704,174 - -0.0
704,185 + Psyr_0615 0.11 +1.2
704,185 + Psyr_0615 0.11 -2.6
704,185 + Psyr_0615 0.11 +1.7
704,186 - Psyr_0615 0.11 +1.0
704,208 + Psyr_0615 0.14 -1.5
704,208 + Psyr_0615 0.14 +0.7
704,208 + Psyr_0615 0.14 -0.2
704,208 + Psyr_0615 0.14 -0.4
704,209 - Psyr_0615 0.14 -0.1
704,209 - Psyr_0615 0.14 +0.1
704,216 + Psyr_0615 0.15 +1.0
704,217 - Psyr_0615 0.15 +0.8
704,231 + Psyr_0615 0.17 +1.9
704,333 + Psyr_0615 0.31 -0.1
704,333 + Psyr_0615 0.31 -0.3
704,334 - Psyr_0615 0.31 +0.8
704,459 + Psyr_0615 0.49 -1.4
704,459 + Psyr_0615 0.49 -2.1
704,459 + Psyr_0615 0.49 -3.1
704,459 + Psyr_0615 0.49 -1.4
704,459 + Psyr_0615 0.49 -1.9
704,459 + Psyr_0615 0.49 -3.0
704,459 + Psyr_0615 0.49 -1.9
704,459 + Psyr_0615 0.49 +0.6
704,459 + Psyr_0615 0.49 +2.5
704,460 - Psyr_0615 0.49 +0.4
704,460 - Psyr_0615 0.49 -0.9
704,460 - Psyr_0615 0.49 +2.3
704,460 - Psyr_0615 0.49 +1.2
704,460 - Psyr_0615 0.49 -0.1
704,460 - Psyr_0615 0.49 -1.2
704,460 - Psyr_0615 0.49 +1.8
704,614 + Psyr_0615 0.70 +0.8
704,614 + Psyr_0615 0.70 -1.0
704,614 + Psyr_0615 0.70 -1.1
704,615 - Psyr_0615 0.70 +0.4
704,695 + Psyr_0615 0.81 +1.5
704,695 + Psyr_0615 0.81 -2.7
704,695 + Psyr_0615 0.81 -1.4
704,695 + Psyr_0615 0.81 +1.6
704,695 + Psyr_0615 0.81 -4.0
704,695 + Psyr_0615 0.81 -0.7
704,695 + Psyr_0615 0.81 +1.1
704,695 + Psyr_0615 0.81 +1.0
704,695 + Psyr_0615 0.81 -1.0
704,695 + Psyr_0615 0.81 -1.9
704,695 + Psyr_0615 0.81 -0.2
704,695 + Psyr_0615 0.81 -1.9
704,696 - Psyr_0615 0.81 +0.3
704,696 - Psyr_0615 0.81 -1.4
704,696 - Psyr_0615 0.81 +1.2
704,696 - Psyr_0615 0.81 -1.9
704,696 - Psyr_0615 0.81 -1.3
704,696 - Psyr_0615 0.81 -0.6
704,696 - Psyr_0615 0.81 +1.0
704,696 - Psyr_0615 0.81 -2.8
704,696 - Psyr_0615 0.81 +0.8
704,696 - Psyr_0615 0.81 -3.7
704,696 - Psyr_0615 0.81 -2.2
704,696 - Psyr_0615 0.81 -1.1
704,696 - Psyr_0615 0.81 +0.7
704,696 - Psyr_0615 0.81 -1.1
704,699 + Psyr_0615 0.82 -2.1
704,699 + Psyr_0615 0.82 +0.5
704,699 + Psyr_0615 0.82 -0.7
704,699 + Psyr_0615 0.82 -0.0
704,699 + Psyr_0615 0.82 -1.6
704,928 + Psyr_0616 0.32 +1.1
704,928 + Psyr_0616 0.32 +1.9
704,929 - Psyr_0616 0.32 +2.4
704,929 - Psyr_0616 0.32 -2.6
704,929 - Psyr_0616 0.32 +1.7
705,135 + -3.5
705,135 + -3.6
705,135 + -0.6
705,135 + +0.3
705,135 + -2.9
705,136 - -2.4
705,136 - -3.1
705,136 - -0.1
705,188 + -2.1
705,189 - -0.1
705,189 - -0.9
705,189 - -1.6
705,192 + +1.7
705,228 + -1.1
705,339 - Psyr_0617 0.11 +1.0
705,339 - Psyr_0617 0.11 -4.1
705,339 - Psyr_0617 0.11 +1.0
705,350 - Psyr_0617 0.11 -2.5
705,350 - Psyr_0617 0.11 +1.0
705,350 - Psyr_0617 0.11 +1.9
705,353 + Psyr_0617 0.11 -0.2
705,354 - Psyr_0617 0.12 +1.5
705,354 - Psyr_0617 0.12 -0.4
705,354 - Psyr_0617 0.12 +1.1
705,362 + Psyr_0617 0.12 -0.8
705,442 - Psyr_0617 0.16 -1.5
705,473 + Psyr_0617 0.18 -0.6
705,473 + Psyr_0617 0.18 -3.0
705,488 + Psyr_0617 0.19 +2.3
705,488 + Psyr_0617 0.19 -2.4
705,488 + Psyr_0617 0.19 -0.5
705,489 - Psyr_0617 0.19 +1.2
705,489 - Psyr_0617 0.19 -1.2
705,539 + Psyr_0617 0.22 -1.5
705,539 + Psyr_0617 0.22 -2.8
705,539 + Psyr_0617 0.22 -2.8
705,539 + Psyr_0617 0.22 +1.0
705,539 + Psyr_0617 0.22 -2.9
705,539 + Psyr_0617 0.22 -1.7
705,539 + Psyr_0617 0.22 +0.8
705,539 + Psyr_0617 0.22 +1.0
705,540 - Psyr_0617 0.22 +4.6
705,540 - Psyr_0617 0.22 +0.4
705,540 - Psyr_0617 0.22 +1.6
705,540 - Psyr_0617 0.22 +0.3
705,549 + Psyr_0617 0.23 +1.4
705,684 + Psyr_0617 0.30 +1.3
705,684 + Psyr_0617 0.30 -0.7
705,684 + Psyr_0617 0.30 -0.2
705,685 - Psyr_0617 0.30 -3.0
705,709 + Psyr_0617 0.32 -1.1
705,710 - Psyr_0617 0.32 -2.1
705,710 - Psyr_0617 0.32 +0.1
705,719 + Psyr_0617 0.32 -0.1

Or see this region's nucleotide sequence