Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0600

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0599 and Psyr_0600 overlap by 4 nucleotidesPsyr_0600 and Psyr_0601 overlap by 4 nucleotides Psyr_0599: Psyr_0599 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 687,919 to 689,232 _0599 Psyr_0600: Psyr_0600 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 689,229 to 690,104 _0600 Psyr_0601: Psyr_0601 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 690,101 to 690,817 _0601 Position (kb) 689 690 691Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 688.282 kb on + strand, within Psyr_0599at 688.282 kb on + strand, within Psyr_0599at 688.282 kb on + strand, within Psyr_0599at 688.282 kb on + strand, within Psyr_0599at 688.282 kb on + strand, within Psyr_0599at 688.283 kb on - strand, within Psyr_0599at 688.315 kb on + strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.316 kb on - strand, within Psyr_0599at 688.379 kb on - strand, within Psyr_0599at 688.391 kb on - strand, within Psyr_0599at 688.405 kb on + strand, within Psyr_0599at 688.406 kb on - strand, within Psyr_0599at 688.429 kb on + strand, within Psyr_0599at 688.430 kb on - strand, within Psyr_0599at 688.531 kb on + strand, within Psyr_0599at 688.531 kb on + strand, within Psyr_0599at 688.584 kb on + strand, within Psyr_0599at 688.584 kb on + strand, within Psyr_0599at 688.585 kb on - strand, within Psyr_0599at 688.696 kb on + strand, within Psyr_0599at 688.696 kb on + strand, within Psyr_0599at 688.697 kb on - strand, within Psyr_0599at 688.697 kb on - strand, within Psyr_0599at 688.697 kb on - strand, within Psyr_0599at 688.711 kb on + strand, within Psyr_0599at 688.711 kb on + strand, within Psyr_0599at 688.741 kb on + strand, within Psyr_0599at 688.741 kb on + strand, within Psyr_0599at 688.741 kb on + strand, within Psyr_0599at 688.741 kb on + strand, within Psyr_0599at 688.741 kb on + strand, within Psyr_0599at 688.742 kb on - strand, within Psyr_0599at 688.946 kb on - strand, within Psyr_0599at 688.946 kb on - strand, within Psyr_0599at 689.187 kb on - strandat 689.394 kb on + strand, within Psyr_0600at 689.394 kb on + strand, within Psyr_0600at 689.394 kb on + strand, within Psyr_0600at 689.394 kb on + strand, within Psyr_0600at 689.395 kb on - strand, within Psyr_0600at 689.458 kb on + strand, within Psyr_0600at 689.520 kb on + strand, within Psyr_0600at 689.520 kb on + strand, within Psyr_0600at 689.520 kb on + strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.524 kb on - strand, within Psyr_0600at 689.524 kb on - strand, within Psyr_0600at 689.524 kb on - strand, within Psyr_0600at 689.524 kb on - strand, within Psyr_0600at 689.678 kb on + strand, within Psyr_0600at 689.727 kb on + strand, within Psyr_0600at 689.727 kb on + strand, within Psyr_0600at 689.727 kb on + strand, within Psyr_0600at 689.728 kb on - strand, within Psyr_0600at 689.990 kb on + strand, within Psyr_0600at 690.048 kb on - strandat 690.073 kb on - strandat 690.100 kb on + strandat 690.100 kb on + strandat 690.101 kb on - strandat 690.143 kb on + strandat 690.290 kb on + strand, within Psyr_0601at 690.291 kb on - strand, within Psyr_0601at 690.291 kb on - strand, within Psyr_0601at 690.291 kb on - strand, within Psyr_0601at 690.291 kb on - strand, within Psyr_0601at 690.326 kb on + strand, within Psyr_0601at 690.326 kb on + strand, within Psyr_0601at 690.326 kb on + strand, within Psyr_0601at 690.326 kb on + strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.669 kb on + strand, within Psyr_0601at 690.669 kb on + strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.778 kb on - strandat 690.778 kb on - strandat 690.789 kb on + strandat 690.918 kb on - strandat 690.929 kb on - strandat 690.999 kb on + strandat 690.999 kb on + strandat 690.999 kb on + strandat 691.011 kb on - strandat 691.014 kb on + strandat 691.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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688,282 + Psyr_0599 0.28 +0.4
688,282 + Psyr_0599 0.28 +1.1
688,282 + Psyr_0599 0.28 -1.0
688,282 + Psyr_0599 0.28 +0.4
688,282 + Psyr_0599 0.28 -1.8
688,283 - Psyr_0599 0.28 -2.1
688,315 + Psyr_0599 0.30 -0.6
688,316 - Psyr_0599 0.30 +0.9
688,316 - Psyr_0599 0.30 -2.9
688,316 - Psyr_0599 0.30 +3.3
688,316 - Psyr_0599 0.30 -3.3
688,316 - Psyr_0599 0.30 -2.7
688,316 - Psyr_0599 0.30 -1.5
688,316 - Psyr_0599 0.30 -2.1
688,316 - Psyr_0599 0.30 -2.3
688,316 - Psyr_0599 0.30 +0.9
688,316 - Psyr_0599 0.30 +1.6
688,316 - Psyr_0599 0.30 +0.3
688,316 - Psyr_0599 0.30 -3.2
688,379 - Psyr_0599 0.35 +0.8
688,391 - Psyr_0599 0.36 +1.0
688,405 + Psyr_0599 0.37 -0.5
688,406 - Psyr_0599 0.37 -0.6
688,429 + Psyr_0599 0.39 -3.2
688,430 - Psyr_0599 0.39 -0.6
688,531 + Psyr_0599 0.47 +0.5
688,531 + Psyr_0599 0.47 -2.7
688,584 + Psyr_0599 0.51 +0.9
688,584 + Psyr_0599 0.51 +0.3
688,585 - Psyr_0599 0.51 -1.9
688,696 + Psyr_0599 0.59 +0.9
688,696 + Psyr_0599 0.59 +1.5
688,697 - Psyr_0599 0.59 +0.4
688,697 - Psyr_0599 0.59 +0.6
688,697 - Psyr_0599 0.59 -0.3
688,711 + Psyr_0599 0.60 -0.1
688,711 + Psyr_0599 0.60 +0.9
688,741 + Psyr_0599 0.63 +2.1
688,741 + Psyr_0599 0.63 +0.6
688,741 + Psyr_0599 0.63 -2.6
688,741 + Psyr_0599 0.63 -1.9
688,741 + Psyr_0599 0.63 -3.4
688,742 - Psyr_0599 0.63 -2.6
688,946 - Psyr_0599 0.78 -0.1
688,946 - Psyr_0599 0.78 -3.7
689,187 - +0.8
689,394 + Psyr_0600 0.19 +0.3
689,394 + Psyr_0600 0.19 +2.3
689,394 + Psyr_0600 0.19 +0.7
689,394 + Psyr_0600 0.19 -0.2
689,395 - Psyr_0600 0.19 +1.0
689,458 + Psyr_0600 0.26 +1.6
689,520 + Psyr_0600 0.33 +0.6
689,520 + Psyr_0600 0.33 +1.5
689,520 + Psyr_0600 0.33 -4.0
689,521 - Psyr_0600 0.33 -3.7
689,521 - Psyr_0600 0.33 -1.0
689,521 - Psyr_0600 0.33 -4.2
689,521 - Psyr_0600 0.33 +0.5
689,521 - Psyr_0600 0.33 -3.2
689,521 - Psyr_0600 0.33 +1.5
689,523 + Psyr_0600 0.34 +0.7
689,523 + Psyr_0600 0.34 -3.1
689,523 + Psyr_0600 0.34 +1.6
689,523 + Psyr_0600 0.34 -2.9
689,523 + Psyr_0600 0.34 -2.3
689,523 + Psyr_0600 0.34 +5.2
689,523 + Psyr_0600 0.34 +1.4
689,523 + Psyr_0600 0.34 +1.8
689,524 - Psyr_0600 0.34 -2.0
689,524 - Psyr_0600 0.34 +1.9
689,524 - Psyr_0600 0.34 -3.1
689,524 - Psyr_0600 0.34 +5.2
689,678 + Psyr_0600 0.51 -1.0
689,727 + Psyr_0600 0.57 -1.1
689,727 + Psyr_0600 0.57 -0.1
689,727 + Psyr_0600 0.57 -1.5
689,728 - Psyr_0600 0.57 -1.2
689,990 + Psyr_0600 0.87 -1.5
690,048 - +0.8
690,073 - -0.9
690,100 + -0.5
690,100 + -3.8
690,101 - +2.3
690,143 + -0.1
690,290 + Psyr_0601 0.26 -0.5
690,291 - Psyr_0601 0.26 +1.2
690,291 - Psyr_0601 0.26 +0.8
690,291 - Psyr_0601 0.26 -3.3
690,291 - Psyr_0601 0.26 +2.0
690,326 + Psyr_0601 0.31 +1.4
690,326 + Psyr_0601 0.31 +0.4
690,326 + Psyr_0601 0.31 -2.0
690,326 + Psyr_0601 0.31 +0.1
690,327 - Psyr_0601 0.32 -0.3
690,327 - Psyr_0601 0.32 -0.6
690,327 - Psyr_0601 0.32 -1.9
690,327 - Psyr_0601 0.32 +3.3
690,327 - Psyr_0601 0.32 +0.3
690,669 + Psyr_0601 0.79 +0.8
690,669 + Psyr_0601 0.79 +1.5
690,670 - Psyr_0601 0.79 +0.4
690,670 - Psyr_0601 0.79 -0.6
690,670 - Psyr_0601 0.79 +0.6
690,722 + Psyr_0601 0.87 -2.5
690,722 + Psyr_0601 0.87 +1.0
690,722 + Psyr_0601 0.87 -0.2
690,722 + Psyr_0601 0.87 +2.0
690,723 - Psyr_0601 0.87 +0.9
690,723 - Psyr_0601 0.87 -0.0
690,723 - Psyr_0601 0.87 -0.1
690,778 - +0.1
690,778 - -0.5
690,789 + -0.1
690,918 - +1.2
690,929 - -1.0
690,999 + -0.6
690,999 + +0.1
690,999 + -1.2
691,011 - -0.5
691,014 + -0.5
691,015 - +0.1

Or see this region's nucleotide sequence