Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0340 and Psyr_0341 are separated by 625 nucleotides Psyr_0341 and Psyr_0342 are separated by 89 nucleotides
Psyr_0340: Psyr_0340 - ABC transporter, periplasmic substrate-binding protein, at 362,237 to 363,256
_0340
Psyr_0341: Psyr_0341 - hypothetical protein, at 363,882 to 364,115
_0341
Psyr_0342: Psyr_0342 - hypothetical protein, at 364,205 to 365,200
_0342
Position (kb) 363
364
365 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.887 kb on + strand, within Psyr_0340 at 362.888 kb on - strand, within Psyr_0340 at 362.888 kb on - strand, within Psyr_0340 at 362.888 kb on - strand, within Psyr_0340 at 362.903 kb on + strand, within Psyr_0340 at 362.903 kb on + strand, within Psyr_0340 at 362.903 kb on + strand, within Psyr_0340 at 362.904 kb on - strand, within Psyr_0340 at 362.904 kb on - strand, within Psyr_0340 at 362.942 kb on + strand, within Psyr_0340 at 362.942 kb on + strand, within Psyr_0340 at 362.942 kb on + strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.943 kb on - strand, within Psyr_0340 at 362.981 kb on + strand, within Psyr_0340 at 362.981 kb on + strand, within Psyr_0340 at 362.981 kb on + strand, within Psyr_0340 at 362.982 kb on - strand, within Psyr_0340 at 362.982 kb on - strand, within Psyr_0340 at 362.993 kb on + strand, within Psyr_0340 at 362.993 kb on + strand, within Psyr_0340 at 362.993 kb on + strand, within Psyr_0340 at 362.994 kb on - strand, within Psyr_0340 at 362.994 kb on - strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.056 kb on + strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.057 kb on - strand, within Psyr_0340 at 363.159 kb on - strand at 363.159 kb on - strand at 363.323 kb on + strand at 363.323 kb on + strand at 363.323 kb on + strand at 363.323 kb on + strand at 363.324 kb on - strand at 363.324 kb on - strand at 363.348 kb on - strand at 363.401 kb on + strand at 363.401 kb on + strand at 363.401 kb on + strand at 363.401 kb on + strand at 363.402 kb on - strand at 363.452 kb on + strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.453 kb on - strand at 363.544 kb on - strand at 363.606 kb on + strand at 363.606 kb on + strand at 363.607 kb on - strand at 363.658 kb on + strand at 363.658 kb on + strand at 363.658 kb on + strand at 363.658 kb on + strand at 363.659 kb on - strand at 363.659 kb on - strand at 363.659 kb on - strand at 363.659 kb on - strand at 363.659 kb on - strand at 363.839 kb on - strand at 363.869 kb on - strand at 363.869 kb on - strand at 363.876 kb on + strand at 363.877 kb on - strand at 363.952 kb on + strand, within Psyr_0341 at 363.952 kb on + strand, within Psyr_0341 at 363.952 kb on + strand, within Psyr_0341 at 363.952 kb on + strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.953 kb on - strand, within Psyr_0341 at 363.979 kb on - strand, within Psyr_0341 at 364.113 kb on + strand at 364.113 kb on + strand at 364.122 kb on + strand at 364.122 kb on + strand at 364.122 kb on + strand at 364.122 kb on + strand at 364.301 kb on + strand at 364.301 kb on + strand at 364.301 kb on + strand at 364.301 kb on + strand at 364.381 kb on + strand, within Psyr_0342 at 364.556 kb on + strand, within Psyr_0342 at 364.556 kb on + strand, within Psyr_0342 at 364.557 kb on - strand, within Psyr_0342 at 364.583 kb on + strand, within Psyr_0342 at 364.583 kb on + strand, within Psyr_0342 at 364.584 kb on - strand, within Psyr_0342 at 364.655 kb on + strand, within Psyr_0342 at 364.662 kb on - strand, within Psyr_0342 at 364.662 kb on - strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.730 kb on + strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.731 kb on - strand, within Psyr_0342 at 364.736 kb on + strand, within Psyr_0342 at 364.736 kb on + strand, within Psyr_0342 at 364.736 kb on + strand, within Psyr_0342 at 364.736 kb on + strand, within Psyr_0342 at 364.736 kb on + strand, within Psyr_0342 at 364.736 kb on + strand, within Psyr_0342 at 364.737 kb on - strand, within Psyr_0342 at 364.737 kb on - strand, within Psyr_0342 at 364.737 kb on - strand, within Psyr_0342 at 364.737 kb on - strand, within Psyr_0342 at 364.737 kb on - strand, within Psyr_0342 at 364.793 kb on - strand, within Psyr_0342 at 364.793 kb on - strand, within Psyr_0342 at 364.958 kb on + strand, within Psyr_0342 at 364.958 kb on + strand, within Psyr_0342 at 364.958 kb on + strand, within Psyr_0342 at 364.958 kb on + strand, within Psyr_0342 at 364.958 kb on + strand, within Psyr_0342 at 364.958 kb on + strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.959 kb on - strand, within Psyr_0342 at 364.960 kb on + strand, within Psyr_0342 at 364.960 kb on + strand, within Psyr_0342 at 364.960 kb on + strand, within Psyr_0342 at 364.960 kb on + strand, within Psyr_0342 at 364.960 kb on + strand, within Psyr_0342 at 364.960 kb on + strand, within Psyr_0342 at 364.961 kb on - strand, within Psyr_0342 at 364.961 kb on - strand, within Psyr_0342 at 364.961 kb on - strand, within Psyr_0342 at 364.961 kb on - strand, within Psyr_0342 at 364.961 kb on - strand, within Psyr_0342 at 364.961 kb on - strand, within Psyr_0342 at 364.970 kb on - strand, within Psyr_0342 at 364.999 kb on + strand, within Psyr_0342 at 364.999 kb on + strand, within Psyr_0342 at 365.000 kb on - strand, within Psyr_0342 at 365.017 kb on + strand, within Psyr_0342 at 365.017 kb on + strand, within Psyr_0342 at 365.017 kb on + strand, within Psyr_0342 at 365.018 kb on - strand, within Psyr_0342 at 365.018 kb on - strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.019 kb on + strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.020 kb on - strand, within Psyr_0342 at 365.060 kb on + strand, within Psyr_0342 at 365.060 kb on + strand, within Psyr_0342 at 365.060 kb on + strand, within Psyr_0342 at 365.060 kb on + strand, within Psyr_0342 at 365.060 kb on + strand, within Psyr_0342 at 365.060 kb on + strand, within Psyr_0342 at 365.060 kb on + strand, within Psyr_0342 at 365.060 kb on + strand, within Psyr_0342 at 365.061 kb on - strand, within Psyr_0342 at 365.061 kb on - strand, within Psyr_0342 at 365.061 kb on - strand, within Psyr_0342 at 365.061 kb on - strand, within Psyr_0342 at 365.061 kb on - strand, within Psyr_0342 at 365.061 kb on - strand, within Psyr_0342 at 365.063 kb on + strand, within Psyr_0342 at 365.063 kb on + strand, within Psyr_0342 at 365.064 kb on - strand, within Psyr_0342
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 362,887 + Psyr_0340 0.64 -0.3 362,887 + Psyr_0340 0.64 -1.1 362,887 + Psyr_0340 0.64 -2.8 362,887 + Psyr_0340 0.64 +1.1 362,887 + Psyr_0340 0.64 -3.1 362,887 + Psyr_0340 0.64 -0.3 362,888 - Psyr_0340 0.64 -0.3 362,888 - Psyr_0340 0.64 +0.8 362,888 - Psyr_0340 0.64 -0.1 362,903 + Psyr_0340 0.65 +3.0 362,903 + Psyr_0340 0.65 -3.2 362,903 + Psyr_0340 0.65 +0.7 362,904 - Psyr_0340 0.65 -0.7 362,904 - Psyr_0340 0.65 -0.7 362,942 + Psyr_0340 0.69 +0.5 362,942 + Psyr_0340 0.69 -0.6 362,942 + Psyr_0340 0.69 -1.3 362,943 - Psyr_0340 0.69 -3.2 362,943 - Psyr_0340 0.69 -1.6 362,943 - Psyr_0340 0.69 -2.6 362,943 - Psyr_0340 0.69 -0.9 362,943 - Psyr_0340 0.69 +5.7 362,943 - Psyr_0340 0.69 -1.7 362,981 + Psyr_0340 0.73 +1.0 362,981 + Psyr_0340 0.73 +1.0 362,981 + Psyr_0340 0.73 -1.0 362,982 - Psyr_0340 0.73 -2.9 362,982 - Psyr_0340 0.73 -1.1 362,993 + Psyr_0340 0.74 -0.5 362,993 + Psyr_0340 0.74 +0.1 362,993 + Psyr_0340 0.74 +0.3 362,994 - Psyr_0340 0.74 -0.8 362,994 - Psyr_0340 0.74 +0.3 363,056 + Psyr_0340 0.80 +0.4 363,056 + Psyr_0340 0.80 +1.8 363,056 + Psyr_0340 0.80 +1.2 363,056 + Psyr_0340 0.80 +2.0 363,056 + Psyr_0340 0.80 -2.3 363,056 + Psyr_0340 0.80 +1.2 363,056 + Psyr_0340 0.80 -2.3 363,057 - Psyr_0340 0.80 +0.3 363,057 - Psyr_0340 0.80 +0.6 363,057 - Psyr_0340 0.80 -1.1 363,057 - Psyr_0340 0.80 +0.7 363,057 - Psyr_0340 0.80 -0.9 363,159 - +0.2 363,159 - +0.5 363,323 + -0.7 363,323 + +4.7 363,323 + +0.8 363,323 + -1.6 363,324 - -0.0 363,324 - -1.8 363,348 - +1.1 363,401 + +1.8 363,401 + -0.8 363,401 + -2.3 363,401 + -0.0 363,402 - -0.2 363,452 + +1.1 363,453 - +2.6 363,453 - +0.6 363,453 - -2.0 363,453 - -1.1 363,453 - +0.3 363,453 - -1.4 363,453 - -3.1 363,544 - +0.7 363,606 + -1.4 363,606 + -0.1 363,607 - -3.4 363,658 + +0.1 363,658 + -3.5 363,658 + +1.4 363,658 + +1.4 363,659 - -0.1 363,659 - +1.0 363,659 - -0.1 363,659 - -0.2 363,659 - +1.2 363,839 - -0.7 363,869 - +1.2 363,869 - +0.6 363,876 + +2.6 363,877 - -1.3 363,952 + Psyr_0341 0.30 -2.2 363,952 + Psyr_0341 0.30 +1.1 363,952 + Psyr_0341 0.30 -0.8 363,952 + Psyr_0341 0.30 +2.0 363,953 - Psyr_0341 0.30 -0.7 363,953 - Psyr_0341 0.30 +0.1 363,953 - Psyr_0341 0.30 -0.3 363,953 - Psyr_0341 0.30 +2.7 363,953 - Psyr_0341 0.30 +1.2 363,979 - Psyr_0341 0.41 +2.0 364,113 + -0.5 364,113 + -2.2 364,122 + -3.5 364,122 + -1.8 364,122 + -0.5 364,122 + +0.0 364,301 + -0.1 364,301 + +1.4 364,301 + -2.3 364,301 + +0.1 364,381 + Psyr_0342 0.18 -1.2 364,556 + Psyr_0342 0.35 -2.6 364,556 + Psyr_0342 0.35 -3.6 364,557 - Psyr_0342 0.35 +0.7 364,583 + Psyr_0342 0.38 +1.3 364,583 + Psyr_0342 0.38 +0.1 364,584 - Psyr_0342 0.38 +0.3 364,655 + Psyr_0342 0.45 -1.3 364,662 - Psyr_0342 0.46 +0.2 364,662 - Psyr_0342 0.46 +0.8 364,730 + Psyr_0342 0.53 +0.2 364,730 + Psyr_0342 0.53 -1.0 364,730 + Psyr_0342 0.53 -1.1 364,730 + Psyr_0342 0.53 -0.3 364,730 + Psyr_0342 0.53 +0.4 364,730 + Psyr_0342 0.53 -2.7 364,730 + Psyr_0342 0.53 -3.6 364,730 + Psyr_0342 0.53 +0.6 364,730 + Psyr_0342 0.53 +2.2 364,730 + Psyr_0342 0.53 -0.3 364,730 + Psyr_0342 0.53 +2.6 364,730 + Psyr_0342 0.53 -0.6 364,730 + Psyr_0342 0.53 +0.8 364,730 + Psyr_0342 0.53 +0.1 364,730 + Psyr_0342 0.53 -0.1 364,730 + Psyr_0342 0.53 +1.5 364,731 - Psyr_0342 0.53 +1.8 364,731 - Psyr_0342 0.53 -0.1 364,731 - Psyr_0342 0.53 +1.3 364,731 - Psyr_0342 0.53 -2.4 364,731 - Psyr_0342 0.53 -2.9 364,731 - Psyr_0342 0.53 -0.8 364,731 - Psyr_0342 0.53 -0.2 364,731 - Psyr_0342 0.53 +2.2 364,731 - Psyr_0342 0.53 +2.5 364,731 - Psyr_0342 0.53 -2.1 364,736 + Psyr_0342 0.53 -0.4 364,736 + Psyr_0342 0.53 +0.6 364,736 + Psyr_0342 0.53 +1.8 364,736 + Psyr_0342 0.53 -0.9 364,736 + Psyr_0342 0.53 +0.1 364,736 + Psyr_0342 0.53 +1.4 364,737 - Psyr_0342 0.53 -2.1 364,737 - Psyr_0342 0.53 -1.1 364,737 - Psyr_0342 0.53 -0.1 364,737 - Psyr_0342 0.53 +0.6 364,737 - Psyr_0342 0.53 +4.3 364,793 - Psyr_0342 0.59 -0.2 364,793 - Psyr_0342 0.59 +1.5 364,958 + Psyr_0342 0.76 +0.3 364,958 + Psyr_0342 0.76 -3.6 364,958 + Psyr_0342 0.76 -1.3 364,958 + Psyr_0342 0.76 +0.8 364,958 + Psyr_0342 0.76 +0.2 364,958 + Psyr_0342 0.76 -0.3 364,959 - Psyr_0342 0.76 -1.2 364,959 - Psyr_0342 0.76 +0.9 364,959 - Psyr_0342 0.76 -0.3 364,959 - Psyr_0342 0.76 -1.0 364,959 - Psyr_0342 0.76 +1.5 364,959 - Psyr_0342 0.76 +0.8 364,959 - Psyr_0342 0.76 -1.3 364,959 - Psyr_0342 0.76 +0.7 364,959 - Psyr_0342 0.76 +1.9 364,959 - Psyr_0342 0.76 -0.8 364,960 + Psyr_0342 0.76 -1.3 364,960 + Psyr_0342 0.76 -1.0 364,960 + Psyr_0342 0.76 +3.2 364,960 + Psyr_0342 0.76 -0.2 364,960 + Psyr_0342 0.76 +0.5 364,960 + Psyr_0342 0.76 +3.2 364,961 - Psyr_0342 0.76 -1.7 364,961 - Psyr_0342 0.76 +0.5 364,961 - Psyr_0342 0.76 +1.8 364,961 - Psyr_0342 0.76 -0.9 364,961 - Psyr_0342 0.76 +3.2 364,961 - Psyr_0342 0.76 +0.3 364,970 - Psyr_0342 0.77 -0.8 364,999 + Psyr_0342 0.80 +1.3 364,999 + Psyr_0342 0.80 +0.7 365,000 - Psyr_0342 0.80 +1.1 365,017 + Psyr_0342 0.82 +0.1 365,017 + Psyr_0342 0.82 +0.9 365,017 + Psyr_0342 0.82 -2.1 365,018 - Psyr_0342 0.82 -1.3 365,018 - Psyr_0342 0.82 -3.4 365,019 + Psyr_0342 0.82 -0.4 365,019 + Psyr_0342 0.82 -0.3 365,019 + Psyr_0342 0.82 -3.6 365,019 + Psyr_0342 0.82 -2.0 365,019 + Psyr_0342 0.82 -0.2 365,019 + Psyr_0342 0.82 -4.0 365,019 + Psyr_0342 0.82 -1.5 365,019 + Psyr_0342 0.82 +1.2 365,019 + Psyr_0342 0.82 -0.7 365,019 + Psyr_0342 0.82 -2.1 365,020 - Psyr_0342 0.82 -1.1 365,020 - Psyr_0342 0.82 +0.1 365,020 - Psyr_0342 0.82 -1.4 365,020 - Psyr_0342 0.82 -0.4 365,020 - Psyr_0342 0.82 +0.1 365,020 - Psyr_0342 0.82 +1.3 365,020 - Psyr_0342 0.82 -2.5 365,020 - Psyr_0342 0.82 +0.8 365,020 - Psyr_0342 0.82 +0.6 365,020 - Psyr_0342 0.82 -0.5 365,020 - Psyr_0342 0.82 -0.9 365,020 - Psyr_0342 0.82 -2.1 365,020 - Psyr_0342 0.82 +0.7 365,060 + Psyr_0342 0.86 +0.6 365,060 + Psyr_0342 0.86 -0.6 365,060 + Psyr_0342 0.86 +0.7 365,060 + Psyr_0342 0.86 +0.8 365,060 + Psyr_0342 0.86 -0.7 365,060 + Psyr_0342 0.86 +1.2 365,060 + Psyr_0342 0.86 -0.7 365,060 + Psyr_0342 0.86 -3.4 365,061 - Psyr_0342 0.86 -0.3 365,061 - Psyr_0342 0.86 +2.8 365,061 - Psyr_0342 0.86 +1.8 365,061 - Psyr_0342 0.86 +0.8 365,061 - Psyr_0342 0.86 -3.5 365,061 - Psyr_0342 0.86 -1.3 365,063 + Psyr_0342 0.86 +1.5 365,063 + Psyr_0342 0.86 -0.5 365,064 - Psyr_0342 0.86 -3.9
Or see this region's nucleotide sequence