Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0207

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0206 and Psyr_0207 are separated by 52 nucleotidesPsyr_0207 and Psyr_0208 are separated by 54 nucleotidesPsyr_0208 and Psyr_0209 are separated by 24 nucleotides Psyr_0206: Psyr_0206 - conserved hypothetical protein, at 220,906 to 221,754 _0206 Psyr_0207: Psyr_0207 - lipoprotein, putative, at 221,807 to 222,544 _0207 Psyr_0208: Psyr_0208 - endoribonuclease L-PSP, at 222,599 to 222,979 _0208 Psyr_0209: Psyr_0209 - RelA/SpoT protein, at 223,004 to 225,127 _0209 Position (kb) 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 220.814 kb on - strandat 220.814 kb on - strandat 220.816 kb on + strandat 220.816 kb on + strandat 220.817 kb on - strandat 220.817 kb on - strandat 220.817 kb on - strandat 220.831 kb on - strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.834 kb on + strandat 220.835 kb on - strandat 220.835 kb on - strandat 221.101 kb on + strand, within Psyr_0206at 221.101 kb on + strand, within Psyr_0206at 221.101 kb on + strand, within Psyr_0206at 221.101 kb on + strand, within Psyr_0206at 221.102 kb on - strand, within Psyr_0206at 221.102 kb on - strand, within Psyr_0206at 221.102 kb on - strand, within Psyr_0206at 221.102 kb on - strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.110 kb on + strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.111 kb on - strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.158 kb on + strand, within Psyr_0206at 221.159 kb on - strand, within Psyr_0206at 221.159 kb on - strand, within Psyr_0206at 221.159 kb on - strand, within Psyr_0206at 221.175 kb on + strand, within Psyr_0206at 221.176 kb on - strand, within Psyr_0206at 221.305 kb on + strand, within Psyr_0206at 221.305 kb on + strand, within Psyr_0206at 221.305 kb on + strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.306 kb on - strand, within Psyr_0206at 221.389 kb on + strand, within Psyr_0206at 221.472 kb on + strand, within Psyr_0206at 221.473 kb on - strand, within Psyr_0206at 221.552 kb on - strand, within Psyr_0206at 221.611 kb on + strand, within Psyr_0206at 221.611 kb on + strand, within Psyr_0206at 221.612 kb on - strand, within Psyr_0206at 221.612 kb on - strand, within Psyr_0206at 221.612 kb on - strand, within Psyr_0206at 221.714 kb on - strandat 221.735 kb on - strandat 221.753 kb on - strandat 221.779 kb on + strandat 221.891 kb on + strand, within Psyr_0207at 221.892 kb on - strand, within Psyr_0207at 221.892 kb on - strand, within Psyr_0207at 221.967 kb on + strand, within Psyr_0207at 221.968 kb on - strand, within Psyr_0207at 222.089 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.115 kb on - strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.343 kb on - strand, within Psyr_0207at 222.343 kb on - strand, within Psyr_0207at 222.600 kb on + strandat 222.696 kb on + strand, within Psyr_0208at 222.696 kb on + strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.901 kb on + strand, within Psyr_0208at 222.927 kb on + strand, within Psyr_0208at 222.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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220,814 - +0.8
220,814 - -1.9
220,816 + +1.0
220,816 + -2.7
220,817 - -2.4
220,817 - -2.3
220,817 - +0.2
220,831 - -2.6
220,834 + +0.8
220,834 + -0.5
220,834 + +0.7
220,834 + -0.2
220,835 - -2.6
220,835 - +0.7
221,101 + Psyr_0206 0.23 +0.0
221,101 + Psyr_0206 0.23 +1.0
221,101 + Psyr_0206 0.23 -2.3
221,101 + Psyr_0206 0.23 +0.0
221,102 - Psyr_0206 0.23 +0.6
221,102 - Psyr_0206 0.23 -3.1
221,102 - Psyr_0206 0.23 -1.6
221,102 - Psyr_0206 0.23 -1.1
221,110 + Psyr_0206 0.24 -0.8
221,110 + Psyr_0206 0.24 +0.9
221,110 + Psyr_0206 0.24 +3.6
221,110 + Psyr_0206 0.24 +1.3
221,110 + Psyr_0206 0.24 -0.8
221,110 + Psyr_0206 0.24 +0.3
221,110 + Psyr_0206 0.24 +1.6
221,111 - Psyr_0206 0.24 -0.2
221,111 - Psyr_0206 0.24 -2.7
221,111 - Psyr_0206 0.24 +0.9
221,111 - Psyr_0206 0.24 +0.4
221,111 - Psyr_0206 0.24 +2.6
221,158 + Psyr_0206 0.30 -2.0
221,158 + Psyr_0206 0.30 +0.6
221,158 + Psyr_0206 0.30 -0.6
221,158 + Psyr_0206 0.30 -0.7
221,158 + Psyr_0206 0.30 -2.2
221,159 - Psyr_0206 0.30 -1.5
221,159 - Psyr_0206 0.30 +2.5
221,159 - Psyr_0206 0.30 +1.4
221,175 + Psyr_0206 0.32 -0.2
221,176 - Psyr_0206 0.32 -3.2
221,305 + Psyr_0206 0.47 -1.5
221,305 + Psyr_0206 0.47 -0.1
221,305 + Psyr_0206 0.47 +0.8
221,306 - Psyr_0206 0.47 +4.2
221,306 - Psyr_0206 0.47 +2.1
221,306 - Psyr_0206 0.47 -1.1
221,306 - Psyr_0206 0.47 -0.7
221,306 - Psyr_0206 0.47 -1.5
221,389 + Psyr_0206 0.57 -2.7
221,472 + Psyr_0206 0.67 -3.1
221,473 - Psyr_0206 0.67 -2.1
221,552 - Psyr_0206 0.76 +0.3
221,611 + Psyr_0206 0.83 -3.5
221,611 + Psyr_0206 0.83 +0.6
221,612 - Psyr_0206 0.83 +1.3
221,612 - Psyr_0206 0.83 -2.6
221,612 - Psyr_0206 0.83 +1.9
221,714 - +0.3
221,735 - -2.9
221,753 - -1.4
221,779 + -0.8
221,891 + Psyr_0207 0.11 -0.2
221,892 - Psyr_0207 0.12 -1.0
221,892 - Psyr_0207 0.12 -1.0
221,967 + Psyr_0207 0.22 -2.4
221,968 - Psyr_0207 0.22 +0.2
222,089 + Psyr_0207 0.38 -1.3
222,114 + Psyr_0207 0.42 +0.6
222,114 + Psyr_0207 0.42 +1.1
222,115 - Psyr_0207 0.42 +5.1
222,342 + Psyr_0207 0.72 +0.6
222,342 + Psyr_0207 0.72 -1.0
222,342 + Psyr_0207 0.72 +1.0
222,343 - Psyr_0207 0.73 +3.0
222,343 - Psyr_0207 0.73 +1.3
222,600 + +0.9
222,696 + Psyr_0208 0.25 -1.7
222,696 + Psyr_0208 0.25 -2.1
222,697 - Psyr_0208 0.26 -0.2
222,697 - Psyr_0208 0.26 +1.3
222,697 - Psyr_0208 0.26 -1.7
222,697 - Psyr_0208 0.26 -0.9
222,697 - Psyr_0208 0.26 +2.5
222,697 - Psyr_0208 0.26 +1.9
222,894 + Psyr_0208 0.77 -1.5
222,894 + Psyr_0208 0.77 -3.1
222,894 + Psyr_0208 0.77 +1.3
222,894 + Psyr_0208 0.77 +3.5
222,894 + Psyr_0208 0.77 -0.3
222,894 + Psyr_0208 0.77 -2.8
222,894 + Psyr_0208 0.77 -0.2
222,894 + Psyr_0208 0.77 +1.6
222,894 + Psyr_0208 0.77 +5.1
222,894 + Psyr_0208 0.77 -1.3
222,895 - Psyr_0208 0.78 -0.3
222,895 - Psyr_0208 0.78 -2.8
222,895 - Psyr_0208 0.78 -0.5
222,895 - Psyr_0208 0.78 -1.8
222,895 - Psyr_0208 0.78 -0.6
222,895 - Psyr_0208 0.78 +0.6
222,895 - Psyr_0208 0.78 +1.4
222,895 - Psyr_0208 0.78 +1.3
222,895 - Psyr_0208 0.78 -0.4
222,901 + Psyr_0208 0.79 +1.5
222,927 + Psyr_0208 0.86 +0.3
222,952 + -1.7

Or see this region's nucleotide sequence