Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0035

Experiment: library passed through aphids in food, 72 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0034 and Psyr_0035 are separated by 79 nucleotidesPsyr_0035 and Psyr_0036 are separated by 0 nucleotidesPsyr_0036 and Psyr_0037 are separated by 165 nucleotidesPsyr_0037 and Psyr_0038 are separated by 150 nucleotides Psyr_0034: Psyr_0034 - tryptophan synthase, beta chain, at 37,998 to 39,227 _0034 Psyr_0035: Psyr_0035 - regulatory protein, LysR:LysR, substrate-binding protein, at 39,307 to 40,263 _0035 Psyr_0036: Psyr_0036 - protein of unknown function DUF883, at 40,264 to 40,590 _0036 Psyr_0037: Psyr_0037 - Protein of unknown function DUF1458, at 40,756 to 40,971 _0037 Psyr_0038: Psyr_0038 - Protein of unknown function DUF1161, at 41,122 to 41,346 _0038 Position (kb) 39 40 41Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 38.350 kb on + strand, within Psyr_0034at 38.351 kb on - strand, within Psyr_0034at 38.351 kb on - strand, within Psyr_0034at 38.351 kb on - strand, within Psyr_0034at 38.648 kb on - strand, within Psyr_0034at 38.806 kb on + strand, within Psyr_0034at 38.806 kb on + strand, within Psyr_0034at 38.806 kb on + strand, within Psyr_0034at 38.807 kb on - strand, within Psyr_0034at 38.807 kb on - strand, within Psyr_0034at 38.807 kb on - strand, within Psyr_0034at 38.807 kb on - strand, within Psyr_0034at 38.807 kb on - strand, within Psyr_0034at 38.807 kb on - strand, within Psyr_0034at 38.920 kb on - strand, within Psyr_0034at 39.028 kb on + strand, within Psyr_0034at 39.028 kb on + strand, within Psyr_0034at 39.053 kb on - strand, within Psyr_0034at 39.053 kb on - strand, within Psyr_0034at 39.068 kb on - strand, within Psyr_0034at 39.257 kb on + strandat 39.258 kb on - strandat 39.258 kb on - strandat 39.258 kb on - strandat 39.270 kb on - strandat 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.602 kb on + strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.603 kb on - strand, within Psyr_0035at 39.792 kb on - strand, within Psyr_0035at 39.792 kb on - strand, within Psyr_0035at 39.792 kb on - strand, within Psyr_0035at 40.033 kb on + strand, within Psyr_0035at 40.033 kb on + strand, within Psyr_0035at 40.034 kb on - strand, within Psyr_0035at 40.034 kb on - strand, within Psyr_0035at 40.034 kb on - strand, within Psyr_0035at 40.034 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.355 kb on + strand, within Psyr_0036at 40.356 kb on - strand, within Psyr_0036at 40.356 kb on - strand, within Psyr_0036at 40.406 kb on + strand, within Psyr_0036at 40.406 kb on + strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.552 kb on - strand, within Psyr_0036at 40.552 kb on - strand, within Psyr_0036at 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.584 kb on + strandat 40.584 kb on + strandat 40.720 kb on + strandat 40.720 kb on + strandat 40.720 kb on + strandat 40.720 kb on + strandat 40.721 kb on - strandat 40.721 kb on - strandat 40.721 kb on - strandat 40.721 kb on - strandat 40.722 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.775 kb on - strandat 40.775 kb on - strandat 40.775 kb on - strandat 40.934 kb on + strand, within Psyr_0037at 40.934 kb on + strand, within Psyr_0037at 40.935 kb on - strand, within Psyr_0037at 40.969 kb on + strandat 40.969 kb on + strandat 40.970 kb on - strandat 40.970 kb on - strandat 41.006 kb on + strandat 41.016 kb on + strandat 41.017 kb on - strandat 41.017 kb on - strandat 41.030 kb on + strandat 41.030 kb on + strandat 41.144 kb on + strandat 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.249 kb on - strand, within Psyr_0038at 41.249 kb on - strand, within Psyr_0038

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
remove
38,350 + Psyr_0034 0.29 +0.6
38,351 - Psyr_0034 0.29 -1.6
38,351 - Psyr_0034 0.29 +0.8
38,351 - Psyr_0034 0.29 -2.0
38,648 - Psyr_0034 0.53 +4.2
38,806 + Psyr_0034 0.66 +0.6
38,806 + Psyr_0034 0.66 +2.6
38,806 + Psyr_0034 0.66 +1.6
38,807 - Psyr_0034 0.66 -0.7
38,807 - Psyr_0034 0.66 -2.3
38,807 - Psyr_0034 0.66 -1.5
38,807 - Psyr_0034 0.66 -1.2
38,807 - Psyr_0034 0.66 +2.3
38,807 - Psyr_0034 0.66 -0.6
38,920 - Psyr_0034 0.75 -3.7
39,028 + Psyr_0034 0.84 +2.6
39,028 + Psyr_0034 0.84 +2.6
39,053 - Psyr_0034 0.86 -1.2
39,053 - Psyr_0034 0.86 +2.4
39,068 - Psyr_0034 0.87 -2.0
39,257 + -0.6
39,258 - +0.8
39,258 - +1.3
39,258 - -1.1
39,270 - -0.8
39,602 + Psyr_0035 0.31 +1.8
39,602 + Psyr_0035 0.31 +1.1
39,602 + Psyr_0035 0.31 -1.6
39,602 + Psyr_0035 0.31 +1.7
39,602 + Psyr_0035 0.31 +2.2
39,602 + Psyr_0035 0.31 -2.1
39,602 + Psyr_0035 0.31 -0.2
39,602 + Psyr_0035 0.31 +2.0
39,602 + Psyr_0035 0.31 +1.6
39,602 + Psyr_0035 0.31 +1.9
39,602 + Psyr_0035 0.31 -4.0
39,602 + Psyr_0035 0.31 +1.8
39,602 + Psyr_0035 0.31 -3.0
39,602 + Psyr_0035 0.31 -0.7
39,602 + Psyr_0035 0.31 +3.0
39,602 + Psyr_0035 0.31 +1.0
39,602 + Psyr_0035 0.31 -2.8
39,602 + Psyr_0035 0.31 +0.8
39,602 + Psyr_0035 0.31 +1.3
39,602 + Psyr_0035 0.31 +0.1
39,602 + Psyr_0035 0.31 -0.8
39,602 + Psyr_0035 0.31 +0.6
39,603 - Psyr_0035 0.31 +1.8
39,603 - Psyr_0035 0.31 -3.0
39,603 - Psyr_0035 0.31 -3.6
39,603 - Psyr_0035 0.31 -0.9
39,603 - Psyr_0035 0.31 +1.6
39,603 - Psyr_0035 0.31 -3.3
39,603 - Psyr_0035 0.31 +0.7
39,603 - Psyr_0035 0.31 -0.4
39,603 - Psyr_0035 0.31 -2.2
39,603 - Psyr_0035 0.31 -1.9
39,792 - Psyr_0035 0.51 +2.5
39,792 - Psyr_0035 0.51 +0.2
39,792 - Psyr_0035 0.51 -3.1
40,033 + Psyr_0035 0.76 +0.6
40,033 + Psyr_0035 0.76 -1.8
40,034 - Psyr_0035 0.76 +2.0
40,034 - Psyr_0035 0.76 +0.5
40,034 - Psyr_0035 0.76 -1.6
40,034 - Psyr_0035 0.76 -1.7
40,037 - Psyr_0035 0.76 +2.7
40,037 - Psyr_0035 0.76 +1.7
40,037 - Psyr_0035 0.76 +1.6
40,037 - Psyr_0035 0.76 +0.4
40,037 - Psyr_0035 0.76 -1.8
40,289 + -3.6
40,289 + +0.7
40,289 + +2.7
40,289 + +1.3
40,289 + +0.1
40,289 + +0.6
40,289 + +2.0
40,289 + -2.7
40,289 + +1.3
40,289 + +0.5
40,290 - +0.8
40,290 - +1.3
40,290 - -1.2
40,290 - -2.8
40,290 - -0.4
40,290 - -3.4
40,290 - +1.4
40,290 - +0.1
40,355 + Psyr_0036 0.28 +0.1
40,356 - Psyr_0036 0.28 +0.2
40,356 - Psyr_0036 0.28 +0.6
40,406 + Psyr_0036 0.43 +4.1
40,406 + Psyr_0036 0.43 -0.6
40,407 - Psyr_0036 0.44 -1.1
40,407 - Psyr_0036 0.44 -2.2
40,407 - Psyr_0036 0.44 -2.0
40,407 - Psyr_0036 0.44 -3.2
40,407 - Psyr_0036 0.44 +1.5
40,552 - Psyr_0036 0.88 +0.6
40,552 - Psyr_0036 0.88 -2.6
40,581 + +0.2
40,581 + +1.4
40,581 + -1.0
40,581 + -0.2
40,581 + +1.0
40,581 + +1.3
40,581 + +1.0
40,581 + -0.4
40,582 - -1.4
40,582 - +4.1
40,582 - -0.8
40,582 - -0.2
40,582 - +0.1
40,582 - +1.3
40,582 - -0.6
40,582 - -0.5
40,582 - -0.4
40,584 + -1.7
40,584 + +0.6
40,720 + -0.7
40,720 + -0.6
40,720 + +1.8
40,720 + +1.5
40,721 - +3.1
40,721 - -1.1
40,721 - -2.5
40,721 - +1.4
40,722 + +1.5
40,774 + +1.2
40,774 + -2.2
40,774 + +0.2
40,774 + +0.5
40,774 + +2.3
40,774 + -0.0
40,774 + +0.6
40,775 - +1.8
40,775 - +0.4
40,775 - -3.6
40,934 + Psyr_0037 0.82 +1.0
40,934 + Psyr_0037 0.82 +0.8
40,935 - Psyr_0037 0.83 +0.9
40,969 + +0.2
40,969 + +3.0
40,970 - -0.5
40,970 - -3.4
41,006 + +1.1
41,016 + +1.2
41,017 - -2.7
41,017 - +1.0
41,030 + +0.4
41,030 + +1.1
41,144 + +0.1
41,248 + Psyr_0038 0.56 +0.8
41,248 + Psyr_0038 0.56 +1.4
41,248 + Psyr_0038 0.56 +1.1
41,248 + Psyr_0038 0.56 -0.1
41,248 + Psyr_0038 0.56 -0.5
41,248 + Psyr_0038 0.56 +1.4
41,249 - Psyr_0038 0.56 -0.2
41,249 - Psyr_0038 0.56 +0.2

Or see this region's nucleotide sequence