Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2356 and HP15_2357 are separated by 1 nucleotides HP15_2357 and HP15_2358 are separated by 133 nucleotides HP15_2358 and HP15_2359 are separated by 123 nucleotides HP15_2359 and HP15_2360 are separated by 227 nucleotides
HP15_2356: HP15_2356 - general secretion pathway protein C, at 2,482,153 to 2,483,004
_2356
HP15_2357: HP15_2357 - conserved hypothetical protein, at 2,483,006 to 2,483,797
_2357
HP15_2358: HP15_2358 - chaperonin GroEL, at 2,483,931 to 2,485,538
_2358
HP15_2359: HP15_2359 - chaperonin Cpn10, at 2,485,662 to 2,485,916
_2359
HP15_2360: HP15_2360 - FxsA cytoplasmic membrane protein, at 2,486,144 to 2,486,692
_2360
Position (kb)
2483
2484
2485
2486 Strain fitness (log2 ratio)
-1
0
1 at 2482.988 kb on + strand at 2483.081 kb on - strand at 2483.339 kb on - strand, within HP15_2357 at 2483.345 kb on - strand, within HP15_2357 at 2483.348 kb on - strand, within HP15_2357 at 2483.412 kb on - strand, within HP15_2357 at 2483.443 kb on + strand, within HP15_2357 at 2483.443 kb on + strand, within HP15_2357 at 2483.467 kb on + strand, within HP15_2357 at 2483.657 kb on - strand, within HP15_2357 at 2483.774 kb on + strand at 2483.774 kb on + strand at 2483.775 kb on + strand at 2483.809 kb on - strand at 2483.928 kb on + strand at 2486.217 kb on - strand, within HP15_2360 at 2486.330 kb on + strand, within HP15_2360 at 2486.330 kb on + strand, within HP15_2360 at 2486.338 kb on - strand, within HP15_2360
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 2,482,988 + +1.0 2,483,081 - +0.1 2,483,339 - HP15_2357 0.42 +0.0 2,483,345 - HP15_2357 0.43 -0.7 2,483,348 - HP15_2357 0.43 -0.9 2,483,412 - HP15_2357 0.51 -1.3 2,483,443 + HP15_2357 0.55 -1.3 2,483,443 + HP15_2357 0.55 -1.5 2,483,467 + HP15_2357 0.58 -0.0 2,483,657 - HP15_2357 0.82 +1.1 2,483,774 + +0.3 2,483,774 + -0.7 2,483,775 + -0.6 2,483,809 - -0.5 2,483,928 + -0.7 2,486,217 - HP15_2360 0.13 -1.6 2,486,330 + HP15_2360 0.34 +0.3 2,486,330 + HP15_2360 0.34 +0.5 2,486,338 - HP15_2360 0.35 -0.8
Or see this region's nucleotide sequence