Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04125 and BWI76_RS04130 are separated by 414 nucleotides BWI76_RS04130 and BWI76_RS04135 are separated by 77 nucleotides
BWI76_RS04125: BWI76_RS04125 - NupC/NupG family nucleoside CNT transporter, at 847,876 to 849,153
_RS04125
BWI76_RS04130: BWI76_RS04130 - 2-deoxyribose-5-phosphate aldolase, at 849,568 to 850,347
_RS04130
BWI76_RS04135: BWI76_RS04135 - thymidine phosphorylase, at 850,425 to 851,747
_RS04135
Position (kb) 849
850
851 Strain fitness (log2 ratio) -1
0
1
2 at 848.874 kb on + strand, within BWI76_RS04125 at 848.956 kb on - strand, within BWI76_RS04125 at 848.958 kb on + strand, within BWI76_RS04125 at 848.975 kb on + strand, within BWI76_RS04125 at 849.148 kb on + strand at 849.483 kb on - strand at 849.607 kb on - strand at 849.727 kb on - strand, within BWI76_RS04130 at 849.761 kb on + strand, within BWI76_RS04130 at 849.776 kb on + strand, within BWI76_RS04130 at 849.828 kb on + strand, within BWI76_RS04130 at 849.870 kb on - strand, within BWI76_RS04130 at 849.928 kb on - strand, within BWI76_RS04130 at 849.933 kb on - strand, within BWI76_RS04130 at 850.241 kb on - strand, within BWI76_RS04130 at 850.396 kb on + strand at 850.652 kb on - strand, within BWI76_RS04135 at 850.836 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.077 kb on - strand, within BWI76_RS04135 at 851.136 kb on + strand at 851.331 kb on + strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 848,874 + BWI76_RS04125 0.78 +1.5 848,956 - BWI76_RS04125 0.85 -1.1 848,958 + BWI76_RS04125 0.85 -0.6 848,975 + BWI76_RS04125 0.86 -0.4 849,148 + +0.2 849,483 - -0.4 849,607 - +0.8 849,727 - BWI76_RS04130 0.20 +1.0 849,761 + BWI76_RS04130 0.25 +1.8 849,776 + BWI76_RS04130 0.27 +1.5 849,828 + BWI76_RS04130 0.33 +1.4 849,870 - BWI76_RS04130 0.39 +0.7 849,928 - BWI76_RS04130 0.46 +1.1 849,933 - BWI76_RS04130 0.47 +1.1 850,241 - BWI76_RS04130 0.86 +2.2 850,396 + -0.1 850,652 - BWI76_RS04135 0.17 -0.2 850,836 + BWI76_RS04135 0.31 -0.1 851,062 + BWI76_RS04135 0.48 +0.9 851,062 + BWI76_RS04135 0.48 -0.3 851,077 - BWI76_RS04135 0.49 -0.0 851,136 + +2.3 851,331 + BWI76_RS04135 0.68 -0.4 851,339 - BWI76_RS04135 0.69 -0.6 851,339 - BWI76_RS04135 0.69 -1.1
Or see this region's nucleotide sequence