Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01605 and BWI76_RS01610 overlap by 4 nucleotides BWI76_RS01610 and BWI76_RS01615 are separated by 15 nucleotides
BWI76_RS01605: BWI76_RS01605 - transcriptional regulatory protein ZraR, at 325,193 to 326,524
_RS01605
BWI76_RS01610: BWI76_RS01610 - phosphoribosylamine--glycine ligase, at 326,521 to 327,813
_RS01610
BWI76_RS01615: BWI76_RS01615 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 327,829 to 329,418
_RS01615
Position (kb) 326
327
328 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 325.528 kb on + strand, within BWI76_RS01605 at 325.606 kb on + strand, within BWI76_RS01605 at 325.643 kb on + strand, within BWI76_RS01605 at 325.736 kb on - strand, within BWI76_RS01605 at 325.812 kb on + strand, within BWI76_RS01605 at 325.901 kb on - strand, within BWI76_RS01605 at 325.976 kb on + strand, within BWI76_RS01605 at 326.186 kb on - strand at 326.212 kb on - strand, within BWI76_RS01605 at 326.233 kb on - strand, within BWI76_RS01605 at 326.669 kb on - strand, within BWI76_RS01610 at 326.977 kb on - strand, within BWI76_RS01610 at 327.022 kb on - strand, within BWI76_RS01610 at 327.081 kb on + strand, within BWI76_RS01610 at 327.113 kb on - strand, within BWI76_RS01610 at 327.206 kb on + strand, within BWI76_RS01610 at 327.516 kb on + strand, within BWI76_RS01610 at 327.586 kb on - strand, within BWI76_RS01610 at 327.628 kb on + strand, within BWI76_RS01610 at 327.648 kb on - strand, within BWI76_RS01610 at 327.712 kb on - strand at 327.862 kb on - strand at 328.002 kb on + strand, within BWI76_RS01615 at 328.075 kb on + strand, within BWI76_RS01615 at 328.100 kb on + strand, within BWI76_RS01615 at 328.127 kb on + strand, within BWI76_RS01615 at 328.135 kb on - strand, within BWI76_RS01615 at 328.249 kb on + strand, within BWI76_RS01615 at 328.268 kb on + strand, within BWI76_RS01615 at 328.357 kb on + strand, within BWI76_RS01615 at 328.543 kb on + strand, within BWI76_RS01615 at 328.608 kb on - strand, within BWI76_RS01615 at 328.639 kb on - strand, within BWI76_RS01615 at 328.689 kb on - strand, within BWI76_RS01615 at 328.739 kb on + strand, within BWI76_RS01615 at 328.775 kb on - strand, within BWI76_RS01615
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 325,528 + BWI76_RS01605 0.25 +1.4 325,606 + BWI76_RS01605 0.31 +0.5 325,643 + BWI76_RS01605 0.34 +1.0 325,736 - BWI76_RS01605 0.41 -0.3 325,812 + BWI76_RS01605 0.46 -0.1 325,901 - BWI76_RS01605 0.53 -0.4 325,976 + BWI76_RS01605 0.59 +0.2 326,186 - +0.2 326,212 - BWI76_RS01605 0.77 +0.2 326,233 - BWI76_RS01605 0.78 +0.2 326,669 - BWI76_RS01610 0.11 -1.3 326,977 - BWI76_RS01610 0.35 -5.0 327,022 - BWI76_RS01610 0.39 -2.6 327,081 + BWI76_RS01610 0.43 -2.2 327,113 - BWI76_RS01610 0.46 -2.3 327,206 + BWI76_RS01610 0.53 -2.9 327,516 + BWI76_RS01610 0.77 -0.9 327,586 - BWI76_RS01610 0.82 -1.9 327,628 + BWI76_RS01610 0.86 -3.2 327,648 - BWI76_RS01610 0.87 -2.5 327,712 - -4.0 327,862 - -2.0 328,002 + BWI76_RS01615 0.11 -3.2 328,075 + BWI76_RS01615 0.15 -3.7 328,100 + BWI76_RS01615 0.17 -1.3 328,127 + BWI76_RS01615 0.19 -5.1 328,135 - BWI76_RS01615 0.19 -1.9 328,249 + BWI76_RS01615 0.26 -1.4 328,268 + BWI76_RS01615 0.28 -2.5 328,357 + BWI76_RS01615 0.33 -2.0 328,543 + BWI76_RS01615 0.45 -2.3 328,608 - BWI76_RS01615 0.49 -1.9 328,639 - BWI76_RS01615 0.51 -0.8 328,689 - BWI76_RS01615 0.54 -1.8 328,739 + BWI76_RS01615 0.57 -1.6 328,775 - BWI76_RS01615 0.59 -0.4
Or see this region's nucleotide sequence