Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01360 and BWI76_RS01365 are separated by 9 nucleotides BWI76_RS01365 and BWI76_RS01370 are separated by 1 nucleotides BWI76_RS01370 and BWI76_RS01375 are separated by 64 nucleotides
BWI76_RS01360: BWI76_RS01360 - acetyl-CoA C-acyltransferase FadA, at 277,464 to 278,627
_RS01360
BWI76_RS01365: BWI76_RS01365 - multifunctional fatty acid oxidation complex subunit alpha, at 278,637 to 280,826
_RS01365
BWI76_RS01370: BWI76_RS01370 - 3-hydroxyacyl-CoA dehydrogenase, at 280,828 to 280,953
_RS01370
BWI76_RS01375: BWI76_RS01375 - Xaa-Pro dipeptidase, at 281,018 to 282,349
_RS01375
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -1
0
1
2 at 277.652 kb on - strand, within BWI76_RS01360 at 277.814 kb on - strand, within BWI76_RS01360 at 277.907 kb on + strand, within BWI76_RS01360 at 277.933 kb on + strand, within BWI76_RS01360 at 278.006 kb on + strand, within BWI76_RS01360 at 278.022 kb on + strand, within BWI76_RS01360 at 278.103 kb on - strand, within BWI76_RS01360 at 278.137 kb on - strand, within BWI76_RS01360 at 278.446 kb on - strand, within BWI76_RS01360 at 278.446 kb on - strand, within BWI76_RS01360 at 278.446 kb on - strand, within BWI76_RS01360 at 278.803 kb on + strand at 278.894 kb on + strand, within BWI76_RS01365 at 278.979 kb on + strand, within BWI76_RS01365 at 279.102 kb on - strand, within BWI76_RS01365 at 279.293 kb on + strand, within BWI76_RS01365 at 279.475 kb on - strand, within BWI76_RS01365 at 279.514 kb on - strand, within BWI76_RS01365 at 279.546 kb on + strand, within BWI76_RS01365 at 279.677 kb on - strand, within BWI76_RS01365 at 279.677 kb on - strand, within BWI76_RS01365 at 279.715 kb on - strand, within BWI76_RS01365 at 279.752 kb on - strand, within BWI76_RS01365 at 279.765 kb on + strand, within BWI76_RS01365 at 279.766 kb on + strand, within BWI76_RS01365 at 280.157 kb on + strand, within BWI76_RS01365 at 280.192 kb on + strand, within BWI76_RS01365 at 280.298 kb on + strand, within BWI76_RS01365 at 280.298 kb on + strand, within BWI76_RS01365 at 280.311 kb on + strand, within BWI76_RS01365 at 280.319 kb on - strand, within BWI76_RS01365 at 280.485 kb on - strand, within BWI76_RS01365 at 280.495 kb on - strand, within BWI76_RS01365 at 280.583 kb on - strand, within BWI76_RS01365 at 280.601 kb on - strand, within BWI76_RS01365 at 280.690 kb on + strand at 280.710 kb on - strand at 280.724 kb on - strand at 280.805 kb on + strand at 280.951 kb on - strand at 280.971 kb on - strand at 281.092 kb on + strand at 281.121 kb on + strand at 281.121 kb on + strand at 281.204 kb on + strand, within BWI76_RS01375 at 281.289 kb on + strand, within BWI76_RS01375 at 281.342 kb on - strand, within BWI76_RS01375 at 281.457 kb on + strand, within BWI76_RS01375 at 281.508 kb on + strand, within BWI76_RS01375 at 281.656 kb on - strand, within BWI76_RS01375 at 281.686 kb on + strand, within BWI76_RS01375 at 281.698 kb on + strand, within BWI76_RS01375 at 281.711 kb on - strand, within BWI76_RS01375 at 281.737 kb on + strand, within BWI76_RS01375
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 277,652 - BWI76_RS01360 0.16 +0.5 277,814 - BWI76_RS01360 0.30 +0.0 277,907 + BWI76_RS01360 0.38 +1.0 277,933 + BWI76_RS01360 0.40 -0.6 278,006 + BWI76_RS01360 0.47 +1.7 278,022 + BWI76_RS01360 0.48 +1.1 278,103 - BWI76_RS01360 0.55 -0.1 278,137 - BWI76_RS01360 0.58 +0.4 278,446 - BWI76_RS01360 0.84 -1.0 278,446 - BWI76_RS01360 0.84 -0.2 278,446 - BWI76_RS01360 0.84 -0.4 278,803 + +0.7 278,894 + BWI76_RS01365 0.12 -0.2 278,979 + BWI76_RS01365 0.16 +0.4 279,102 - BWI76_RS01365 0.21 -1.7 279,293 + BWI76_RS01365 0.30 -0.8 279,475 - BWI76_RS01365 0.38 +0.2 279,514 - BWI76_RS01365 0.40 -0.6 279,546 + BWI76_RS01365 0.42 +0.4 279,677 - BWI76_RS01365 0.47 -1.3 279,677 - BWI76_RS01365 0.47 -0.1 279,715 - BWI76_RS01365 0.49 +0.1 279,752 - BWI76_RS01365 0.51 +0.4 279,765 + BWI76_RS01365 0.52 +0.0 279,766 + BWI76_RS01365 0.52 +0.1 280,157 + BWI76_RS01365 0.69 +0.1 280,192 + BWI76_RS01365 0.71 +0.1 280,298 + BWI76_RS01365 0.76 -0.2 280,298 + BWI76_RS01365 0.76 -0.4 280,311 + BWI76_RS01365 0.76 -0.6 280,319 - BWI76_RS01365 0.77 +0.6 280,485 - BWI76_RS01365 0.84 +1.1 280,495 - BWI76_RS01365 0.85 +1.5 280,583 - BWI76_RS01365 0.89 +0.5 280,601 - BWI76_RS01365 0.90 -1.4 280,690 + +0.5 280,710 - +0.2 280,724 - +0.3 280,805 + +0.3 280,951 - -0.4 280,971 - +0.1 281,092 + +0.9 281,121 + +0.3 281,121 + +1.2 281,204 + BWI76_RS01375 0.14 +1.9 281,289 + BWI76_RS01375 0.20 -1.1 281,342 - BWI76_RS01375 0.24 -0.4 281,457 + BWI76_RS01375 0.33 -1.0 281,508 + BWI76_RS01375 0.37 -0.8 281,656 - BWI76_RS01375 0.48 +0.4 281,686 + BWI76_RS01375 0.50 +0.2 281,698 + BWI76_RS01375 0.51 +0.1 281,711 - BWI76_RS01375 0.52 -0.6 281,737 + BWI76_RS01375 0.54 +0.6
Or see this region's nucleotide sequence