Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0589 and DVU0590 are separated by 483 nucleotides DVU0590 and mcpD are separated by 183 nucleotides
DVU0589: DVU0589 - molybdopterin-guanine dinucleotide biosynthesis protein B, putative (TIGR), at 657,590 to 658,330
DVU0589
DVU0590: DVU0590 - hypothetical protein (TIGR), at 658,814 to 659,122
DVU0590
DVU0591: mcpD - methyl-accepting chemotaxis protein (TIGR), at 659,306 to 661,264
mcpD
Position (kb) 658
659
660 Strain fitness (log2 ratio) -1
0
1
2 at 657.873 kb on - strand, within DVU0589 at 657.895 kb on + strand, within DVU0589 at 658.049 kb on - strand, within DVU0589 at 658.078 kb on + strand, within DVU0589 at 658.086 kb on - strand, within DVU0589 at 658.111 kb on + strand, within DVU0589 at 658.129 kb on - strand, within DVU0589 at 658.157 kb on + strand, within DVU0589 at 658.157 kb on + strand, within DVU0589 at 658.174 kb on + strand, within DVU0589 at 658.178 kb on - strand, within DVU0589 at 658.211 kb on + strand, within DVU0589 at 658.217 kb on + strand, within DVU0589 at 658.276 kb on + strand at 658.284 kb on - strand at 658.366 kb on - strand at 658.366 kb on - strand at 658.435 kb on - strand at 658.691 kb on + strand at 658.706 kb on + strand at 658.706 kb on + strand at 658.738 kb on - strand at 658.808 kb on + strand at 658.863 kb on + strand, within DVU0590 at 658.912 kb on - strand, within DVU0590 at 658.912 kb on - strand, within DVU0590 at 658.949 kb on + strand, within DVU0590 at 659.098 kb on + strand at 659.240 kb on + strand at 659.350 kb on - strand at 659.353 kb on - strand at 659.445 kb on - strand at 659.469 kb on + strand at 659.549 kb on + strand, within mcpD at 659.557 kb on + strand, within mcpD at 659.565 kb on - strand, within mcpD at 659.572 kb on + strand, within mcpD at 659.590 kb on - strand, within mcpD at 659.684 kb on - strand, within mcpD at 659.691 kb on - strand, within mcpD at 659.757 kb on - strand, within mcpD at 659.783 kb on - strand, within mcpD at 659.836 kb on + strand, within mcpD at 659.844 kb on - strand, within mcpD at 659.870 kb on + strand, within mcpD at 659.870 kb on + strand, within mcpD at 659.937 kb on - strand, within mcpD at 659.937 kb on - strand, within mcpD at 659.956 kb on + strand, within mcpD at 659.956 kb on + strand, within mcpD at 659.964 kb on - strand, within mcpD at 659.973 kb on + strand, within mcpD at 659.995 kb on + strand, within mcpD at 660.003 kb on - strand, within mcpD at 660.014 kb on + strand, within mcpD at 660.055 kb on - strand, within mcpD at 660.103 kb on - strand, within mcpD
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 657,873 - DVU0589 0.38 -0.7 657,895 + DVU0589 0.41 +0.4 658,049 - DVU0589 0.62 -1.5 658,078 + DVU0589 0.66 -0.5 658,086 - DVU0589 0.67 +0.0 658,111 + DVU0589 0.70 -0.1 658,129 - DVU0589 0.73 +0.3 658,157 + DVU0589 0.77 -0.7 658,157 + DVU0589 0.77 -0.2 658,174 + DVU0589 0.79 +1.0 658,178 - DVU0589 0.79 -0.7 658,211 + DVU0589 0.84 +0.9 658,217 + DVU0589 0.85 +0.3 658,276 + -0.3 658,284 - +0.5 658,366 - -0.8 658,366 - +0.5 658,435 - +0.9 658,691 + +1.1 658,706 + -0.2 658,706 + +0.6 658,738 - -0.1 658,808 + +0.0 658,863 + DVU0590 0.16 -0.3 658,912 - DVU0590 0.32 -1.1 658,912 - DVU0590 0.32 -0.2 658,949 + DVU0590 0.44 -1.1 659,098 + +0.4 659,240 + -0.4 659,350 - -1.4 659,353 - -0.2 659,445 - -0.9 659,469 + -0.2 659,549 + mcpD DVU0591 0.12 -0.3 659,557 + mcpD DVU0591 0.13 -1.5 659,565 - mcpD DVU0591 0.13 -0.1 659,572 + mcpD DVU0591 0.14 +0.8 659,590 - mcpD DVU0591 0.14 -0.0 659,684 - mcpD DVU0591 0.19 -0.7 659,691 - mcpD DVU0591 0.20 -0.1 659,757 - mcpD DVU0591 0.23 +1.1 659,783 - mcpD DVU0591 0.24 +0.2 659,836 + mcpD DVU0591 0.27 -0.3 659,844 - mcpD DVU0591 0.27 -0.7 659,870 + mcpD DVU0591 0.29 -0.0 659,870 + mcpD DVU0591 0.29 -0.0 659,937 - mcpD DVU0591 0.32 +0.0 659,937 - mcpD DVU0591 0.32 -0.2 659,956 + mcpD DVU0591 0.33 -0.3 659,956 + mcpD DVU0591 0.33 +0.4 659,964 - mcpD DVU0591 0.34 -0.2 659,973 + mcpD DVU0591 0.34 +0.1 659,995 + mcpD DVU0591 0.35 -0.1 660,003 - mcpD DVU0591 0.36 -0.2 660,014 + mcpD DVU0591 0.36 +1.3 660,055 - mcpD DVU0591 0.38 +1.9 660,103 - mcpD DVU0591 0.41 -0.4
Or see this region's nucleotide sequence