Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gap-1 and DVU0566 are separated by 19 nucleotides DVU0566 and DVU0567 are separated by 214 nucleotides
DVU0565: gap-1 - glyceraldehyde 3-phosphate dehydrogenase (TIGR), at 630,087 to 631,103
gap-1
DVU0566: DVU0566 - GAF domain protein (TIGR), at 631,123 to 631,680
DVU0566
DVU0567: DVU0567 - TerC family protein (TIGR), at 631,895 to 632,974
DVU0567
Position (kb) 631
632 Strain fitness (log2 ratio) -2
-1
0
1
2 at 630.149 kb on - strand at 630.176 kb on - strand at 630.194 kb on - strand, within gap-1 at 630.235 kb on + strand, within gap-1 at 630.243 kb on - strand, within gap-1 at 630.273 kb on + strand, within gap-1 at 630.283 kb on + strand, within gap-1 at 630.289 kb on + strand, within gap-1 at 630.302 kb on - strand, within gap-1 at 630.436 kb on - strand, within gap-1 at 630.450 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.458 kb on - strand, within gap-1 at 630.515 kb on - strand, within gap-1 at 630.635 kb on - strand, within gap-1 at 630.682 kb on - strand, within gap-1 at 630.721 kb on + strand, within gap-1 at 630.767 kb on - strand, within gap-1 at 630.964 kb on + strand, within gap-1 at 630.972 kb on + strand, within gap-1 at 631.017 kb on - strand at 631.285 kb on + strand, within DVU0566 at 631.335 kb on + strand, within DVU0566 at 631.348 kb on - strand, within DVU0566 at 631.407 kb on + strand, within DVU0566 at 631.422 kb on - strand, within DVU0566 at 631.469 kb on - strand, within DVU0566 at 631.476 kb on - strand, within DVU0566 at 631.623 kb on - strand, within DVU0566 at 631.635 kb on - strand at 631.696 kb on + strand at 631.751 kb on - strand at 631.968 kb on + strand at 631.973 kb on + strand at 631.981 kb on - strand at 632.105 kb on - strand, within DVU0567 at 632.110 kb on - strand, within DVU0567 at 632.190 kb on + strand, within DVU0567 at 632.255 kb on + strand, within DVU0567 at 632.255 kb on + strand, within DVU0567 at 632.263 kb on - strand, within DVU0567 at 632.295 kb on - strand, within DVU0567 at 632.382 kb on - strand, within DVU0567 at 632.393 kb on + strand, within DVU0567 at 632.406 kb on + strand, within DVU0567 at 632.453 kb on + strand, within DVU0567 at 632.634 kb on + strand, within DVU0567 at 632.642 kb on - strand, within DVU0567 at 632.642 kb on - strand, within DVU0567
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 630,149 - +1.1 630,176 - +0.1 630,194 - gap-1 DVU0565 0.11 -0.4 630,235 + gap-1 DVU0565 0.15 -0.1 630,243 - gap-1 DVU0565 0.15 +0.7 630,273 + gap-1 DVU0565 0.18 -0.2 630,283 + gap-1 DVU0565 0.19 +0.2 630,289 + gap-1 DVU0565 0.20 -0.2 630,302 - gap-1 DVU0565 0.21 -0.4 630,436 - gap-1 DVU0565 0.34 +0.1 630,450 + gap-1 DVU0565 0.36 -0.1 630,455 + gap-1 DVU0565 0.36 -0.4 630,455 + gap-1 DVU0565 0.36 -1.1 630,455 + gap-1 DVU0565 0.36 -0.1 630,455 + gap-1 DVU0565 0.36 -0.8 630,455 + gap-1 DVU0565 0.36 -0.2 630,458 - gap-1 DVU0565 0.36 +0.5 630,515 - gap-1 DVU0565 0.42 +0.6 630,635 - gap-1 DVU0565 0.54 -0.5 630,682 - gap-1 DVU0565 0.59 +0.3 630,721 + gap-1 DVU0565 0.62 -0.3 630,767 - gap-1 DVU0565 0.67 +1.9 630,964 + gap-1 DVU0565 0.86 -0.2 630,972 + gap-1 DVU0565 0.87 -0.2 631,017 - +1.3 631,285 + DVU0566 0.29 +0.0 631,335 + DVU0566 0.38 -0.2 631,348 - DVU0566 0.40 -0.1 631,407 + DVU0566 0.51 +0.1 631,422 - DVU0566 0.54 -0.9 631,469 - DVU0566 0.62 -0.8 631,476 - DVU0566 0.63 -0.2 631,623 - DVU0566 0.90 -0.9 631,635 - +0.0 631,696 + -0.2 631,751 - -1.0 631,968 + -0.2 631,973 + -0.7 631,981 - -0.5 632,105 - DVU0567 0.19 -1.0 632,110 - DVU0567 0.20 +0.1 632,190 + DVU0567 0.27 +0.2 632,255 + DVU0567 0.33 -0.1 632,255 + DVU0567 0.33 +0.5 632,263 - DVU0567 0.34 -0.6 632,295 - DVU0567 0.37 -0.2 632,382 - DVU0567 0.45 -0.4 632,393 + DVU0567 0.46 +0.9 632,406 + DVU0567 0.47 +0.1 632,453 + DVU0567 0.52 -0.1 632,634 + DVU0567 0.68 +0.1 632,642 - DVU0567 0.69 -2.1 632,642 - DVU0567 0.69 -0.0
Or see this region's nucleotide sequence