Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlpA and DVU0398 are separated by 80 nucleotides DVU0398 and DVU0399 overlap by 4 nucleotides DVU0399 and DVU0400 are separated by 84 nucleotides
DVU0397: rlpA - rare lipoprotein A, putative (TIGR), at 445,073 to 445,804
rlpA
DVU0398: DVU0398 - HMGL-like domain protein (TIGR), at 445,885 to 447,711
DVU0398
DVU0399: DVU0399 - hypothetical protein (TIGR), at 447,708 to 448,496
DVU0399
DVU0400: DVU0400 - hypothetical protein (TIGR), at 448,581 to 449,132
DVU0400
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -2
-1
0
1 at 444.980 kb on - strand at 444.985 kb on - strand at 445.134 kb on + strand at 445.168 kb on - strand, within rlpA at 445.270 kb on - strand, within rlpA at 445.290 kb on + strand, within rlpA at 445.290 kb on + strand, within rlpA at 445.300 kb on + strand, within rlpA at 445.308 kb on - strand, within rlpA at 445.377 kb on - strand, within rlpA at 445.389 kb on + strand, within rlpA at 445.397 kb on - strand, within rlpA at 445.492 kb on + strand, within rlpA at 445.497 kb on + strand, within rlpA at 445.515 kb on - strand, within rlpA at 445.572 kb on + strand, within rlpA at 445.619 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.681 kb on + strand, within rlpA at 445.703 kb on + strand, within rlpA at 445.705 kb on - strand, within rlpA at 445.720 kb on + strand, within rlpA at 445.760 kb on - strand at 445.760 kb on - strand at 445.802 kb on - strand at 445.846 kb on + strand at 445.847 kb on - strand at 445.862 kb on + strand at 445.877 kb on + strand at 445.877 kb on + strand at 445.877 kb on + strand at 446.036 kb on - strand at 446.067 kb on + strand at 446.070 kb on - strand, within DVU0398 at 446.367 kb on + strand, within DVU0398 at 447.726 kb on + strand at 447.734 kb on - strand at 447.768 kb on - strand at 447.770 kb on + strand at 447.847 kb on + strand, within DVU0399 at 447.847 kb on + strand, within DVU0399 at 447.910 kb on + strand, within DVU0399 at 447.948 kb on + strand, within DVU0399 at 447.956 kb on - strand, within DVU0399 at 447.978 kb on + strand, within DVU0399 at 448.131 kb on + strand, within DVU0399 at 448.157 kb on - strand, within DVU0399 at 448.167 kb on - strand, within DVU0399 at 448.172 kb on - strand, within DVU0399 at 448.182 kb on - strand, within DVU0399 at 448.182 kb on - strand, within DVU0399 at 448.272 kb on - strand, within DVU0399 at 448.306 kb on + strand, within DVU0399 at 448.352 kb on + strand, within DVU0399 at 448.359 kb on + strand, within DVU0399 at 448.360 kb on - strand, within DVU0399 at 448.420 kb on + strand at 448.476 kb on - strand at 448.486 kb on - strand at 448.542 kb on + strand at 448.577 kb on - strand at 448.682 kb on + strand, within DVU0400 at 448.696 kb on + strand, within DVU0400
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 444,980 - -0.0 444,985 - +0.2 445,134 + -0.1 445,168 - rlpA DVU0397 0.13 -0.3 445,270 - rlpA DVU0397 0.27 -1.0 445,290 + rlpA DVU0397 0.30 +0.0 445,290 + rlpA DVU0397 0.30 -1.5 445,300 + rlpA DVU0397 0.31 -0.9 445,308 - rlpA DVU0397 0.32 -0.3 445,377 - rlpA DVU0397 0.42 -1.2 445,389 + rlpA DVU0397 0.43 -0.9 445,397 - rlpA DVU0397 0.44 -0.5 445,492 + rlpA DVU0397 0.57 -0.8 445,497 + rlpA DVU0397 0.58 -0.1 445,515 - rlpA DVU0397 0.60 -0.5 445,572 + rlpA DVU0397 0.68 -0.1 445,619 + rlpA DVU0397 0.75 -2.7 445,662 + rlpA DVU0397 0.80 -1.0 445,662 + rlpA DVU0397 0.80 -0.5 445,662 + rlpA DVU0397 0.80 -0.9 445,662 + rlpA DVU0397 0.80 -1.9 445,662 + rlpA DVU0397 0.80 -0.5 445,662 + rlpA DVU0397 0.80 -1.0 445,662 + rlpA DVU0397 0.80 -1.7 445,662 + rlpA DVU0397 0.80 +1.0 445,662 + rlpA DVU0397 0.80 -0.6 445,670 - rlpA DVU0397 0.82 -1.2 445,670 - rlpA DVU0397 0.82 -0.2 445,670 - rlpA DVU0397 0.82 -0.7 445,670 - rlpA DVU0397 0.82 -0.6 445,670 - rlpA DVU0397 0.82 -0.4 445,670 - rlpA DVU0397 0.82 -0.2 445,670 - rlpA DVU0397 0.82 -1.0 445,670 - rlpA DVU0397 0.82 -0.1 445,670 - rlpA DVU0397 0.82 -0.5 445,681 + rlpA DVU0397 0.83 -0.5 445,703 + rlpA DVU0397 0.86 -0.5 445,705 - rlpA DVU0397 0.86 -0.9 445,720 + rlpA DVU0397 0.88 -0.7 445,760 - +0.8 445,760 - -0.5 445,802 - +0.0 445,846 + +0.1 445,847 - +0.5 445,862 + -0.2 445,877 + +1.2 445,877 + -0.2 445,877 + -0.2 446,036 - +0.3 446,067 + -0.5 446,070 - DVU0398 0.10 -0.9 446,367 + DVU0398 0.26 -2.1 447,726 + +0.9 447,734 - -2.6 447,768 - +0.9 447,770 + -0.0 447,847 + DVU0399 0.18 -0.3 447,847 + DVU0399 0.18 -0.8 447,910 + DVU0399 0.26 -0.3 447,948 + DVU0399 0.30 -0.4 447,956 - DVU0399 0.31 -0.2 447,978 + DVU0399 0.34 -2.0 448,131 + DVU0399 0.54 -0.2 448,157 - DVU0399 0.57 +0.1 448,167 - DVU0399 0.58 -0.3 448,172 - DVU0399 0.59 -0.4 448,182 - DVU0399 0.60 -1.2 448,182 - DVU0399 0.60 -1.1 448,272 - DVU0399 0.71 -0.0 448,306 + DVU0399 0.76 +0.7 448,352 + DVU0399 0.82 -0.8 448,359 + DVU0399 0.83 -1.0 448,360 - DVU0399 0.83 -0.2 448,420 + +1.0 448,476 - +1.7 448,486 - -1.8 448,542 + +0.7 448,577 - +0.6 448,682 + DVU0400 0.18 -1.8 448,696 + DVU0400 0.21 -0.3
Or see this region's nucleotide sequence