Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0375 and DVU0376 are separated by 21 nucleotides DVU0376 and trxB-1 are separated by 3 nucleotides trxB-1 and DVU0378 are separated by 18 nucleotides DVU0378 and DVU0379 are separated by 22 nucleotides
DVU0375: DVU0375 - Glu/Leu/Phe/Val dehydrogenase family protein (TIGR), at 425,986 to 427,215
DVU0375
DVU0376: DVU0376 - hypothetical protein (TIGR), at 427,237 to 427,503
DVU0376
DVU0377: trxB-1 - thioredoxin reductase (TIGR), at 427,507 to 428,424
trxB-1
DVU0378: DVU0378 - thioredoxin, putative (TIGR), at 428,443 to 428,757
DVU0378
DVU0379: DVU0379 - transcriptional regulator, putative (TIGR), at 428,780 to 429,457
DVU0379
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 426.529 kb on - strand, within DVU0375 at 426.549 kb on + strand, within DVU0375 at 426.552 kb on - strand, within DVU0375 at 426.605 kb on + strand, within DVU0375 at 426.614 kb on + strand, within DVU0375 at 426.622 kb on - strand, within DVU0375 at 426.678 kb on + strand, within DVU0375 at 426.779 kb on - strand, within DVU0375 at 426.782 kb on + strand, within DVU0375 at 426.783 kb on + strand, within DVU0375 at 426.816 kb on - strand, within DVU0375 at 426.942 kb on - strand, within DVU0375 at 426.946 kb on - strand, within DVU0375 at 426.965 kb on - strand, within DVU0375 at 427.034 kb on + strand, within DVU0375 at 427.034 kb on + strand, within DVU0375 at 427.042 kb on - strand, within DVU0375 at 427.047 kb on + strand, within DVU0375 at 427.052 kb on + strand, within DVU0375 at 427.052 kb on + strand, within DVU0375 at 427.063 kb on + strand, within DVU0375 at 427.063 kb on + strand, within DVU0375 at 427.066 kb on - strand, within DVU0375 at 427.115 kb on + strand at 427.257 kb on + strand at 427.359 kb on - strand, within DVU0376 at 427.430 kb on + strand, within DVU0376 at 427.441 kb on + strand, within DVU0376 at 427.502 kb on - strand at 427.504 kb on + strand at 427.546 kb on - strand at 427.553 kb on - strand at 427.645 kb on + strand, within trxB-1 at 427.645 kb on + strand, within trxB-1 at 427.753 kb on + strand, within trxB-1 at 427.785 kb on + strand, within trxB-1 at 427.795 kb on + strand, within trxB-1 at 427.950 kb on - strand, within trxB-1 at 427.951 kb on + strand, within trxB-1 at 428.116 kb on + strand, within trxB-1 at 428.143 kb on - strand, within trxB-1 at 428.210 kb on - strand, within trxB-1 at 428.285 kb on + strand, within trxB-1 at 428.568 kb on + strand, within DVU0378 at 428.568 kb on + strand, within DVU0378 at 428.651 kb on + strand, within DVU0378 at 428.664 kb on + strand, within DVU0378 at 428.786 kb on - strand at 428.940 kb on + strand, within DVU0379 at 428.949 kb on + strand, within DVU0379 at 428.957 kb on - strand, within DVU0379 at 429.022 kb on - strand, within DVU0379 at 429.077 kb on - strand, within DVU0379 at 429.227 kb on - strand, within DVU0379 at 429.272 kb on - strand, within DVU0379 at 429.317 kb on + strand, within DVU0379 at 429.402 kb on - strand at 429.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 426,529 - DVU0375 0.44 -0.2 426,549 + DVU0375 0.46 -0.1 426,552 - DVU0375 0.46 -0.4 426,605 + DVU0375 0.50 +0.2 426,614 + DVU0375 0.51 -0.0 426,622 - DVU0375 0.52 -0.3 426,678 + DVU0375 0.56 -0.1 426,779 - DVU0375 0.64 -3.6 426,782 + DVU0375 0.65 -0.1 426,783 + DVU0375 0.65 +0.0 426,816 - DVU0375 0.67 -1.4 426,942 - DVU0375 0.78 -0.8 426,946 - DVU0375 0.78 -1.0 426,965 - DVU0375 0.80 +0.1 427,034 + DVU0375 0.85 -0.1 427,034 + DVU0375 0.85 -0.8 427,042 - DVU0375 0.86 -0.4 427,047 + DVU0375 0.86 -0.3 427,052 + DVU0375 0.87 -0.1 427,052 + DVU0375 0.87 +0.2 427,063 + DVU0375 0.88 +0.2 427,063 + DVU0375 0.88 -0.2 427,066 - DVU0375 0.88 -0.1 427,115 + +0.4 427,257 + +0.0 427,359 - DVU0376 0.46 -0.3 427,430 + DVU0376 0.72 -0.6 427,441 + DVU0376 0.76 -0.9 427,502 - -0.5 427,504 + -0.3 427,546 - -0.4 427,553 - +0.0 427,645 + trxB-1 DVU0377 0.15 -1.3 427,645 + trxB-1 DVU0377 0.15 -0.4 427,753 + trxB-1 DVU0377 0.27 -1.7 427,785 + trxB-1 DVU0377 0.30 +0.2 427,795 + trxB-1 DVU0377 0.31 -1.2 427,950 - trxB-1 DVU0377 0.48 -1.6 427,951 + trxB-1 DVU0377 0.48 -0.1 428,116 + trxB-1 DVU0377 0.66 -1.6 428,143 - trxB-1 DVU0377 0.69 -0.8 428,210 - trxB-1 DVU0377 0.77 -0.2 428,285 + trxB-1 DVU0377 0.85 -0.1 428,568 + DVU0378 0.40 -0.1 428,568 + DVU0378 0.40 +0.2 428,651 + DVU0378 0.66 -0.2 428,664 + DVU0378 0.70 -0.6 428,786 - +0.3 428,940 + DVU0379 0.24 +0.4 428,949 + DVU0379 0.25 +0.1 428,957 - DVU0379 0.26 -0.2 429,022 - DVU0379 0.36 -0.6 429,077 - DVU0379 0.44 +1.0 429,227 - DVU0379 0.66 +0.6 429,272 - DVU0379 0.73 -0.3 429,317 + DVU0379 0.79 -0.5 429,402 - -0.2 429,411 - +0.2
Or see this region's nucleotide sequence