Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0347

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0346 and DVU0347 are separated by 295 nucleotidesDVU0347 and DVU0348 are separated by 18 nucleotides DVU0346: DVU0346 - membrane protein, putative (TIGR), at 391,830 to 393,368 DVU0346 DVU0347: DVU0347 - transferase, hexapeptide repeat family (TIGR), at 393,664 to 394,335 DVU0347 DVU0348: DVU0348 - hypothetical protein (TIGR), at 394,354 to 396,078 DVU0348 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1at 393.374 kb on + strandat 393.409 kb on - strandat 393.416 kb on + strandat 393.481 kb on + strandat 393.559 kb on - strandat 393.566 kb on + strandat 393.566 kb on + strandat 393.574 kb on - strandat 393.574 kb on - strandat 393.592 kb on + strandat 393.592 kb on + strandat 393.600 kb on - strandat 393.600 kb on - strandat 393.600 kb on - strandat 393.696 kb on - strandat 393.779 kb on - strand, within DVU0347at 393.789 kb on - strand, within DVU0347at 393.792 kb on - strand, within DVU0347at 393.809 kb on - strand, within DVU0347at 393.859 kb on + strand, within DVU0347at 393.867 kb on - strand, within DVU0347at 393.876 kb on - strand, within DVU0347at 394.039 kb on - strand, within DVU0347at 394.118 kb on - strand, within DVU0347at 394.209 kb on + strand, within DVU0347at 394.226 kb on - strand, within DVU0347at 394.281 kb on + strandat 394.309 kb on - strandat 394.319 kb on - strandat 394.384 kb on - strandat 394.385 kb on - strandat 394.459 kb on + strandat 394.468 kb on + strandat 394.476 kb on - strandat 394.555 kb on - strand, within DVU0348at 394.598 kb on + strand, within DVU0348at 394.636 kb on - strand, within DVU0348at 394.646 kb on - strand, within DVU0348at 394.646 kb on - strand, within DVU0348at 394.646 kb on - strand, within DVU0348at 394.684 kb on + strand, within DVU0348at 394.709 kb on + strand, within DVU0348at 394.722 kb on - strand, within DVU0348at 394.781 kb on - strand, within DVU0348at 394.789 kb on + strand, within DVU0348at 394.789 kb on + strand, within DVU0348at 394.797 kb on - strand, within DVU0348at 394.816 kb on + strand, within DVU0348at 394.819 kb on - strand, within DVU0348at 394.821 kb on + strand, within DVU0348at 394.823 kb on + strand, within DVU0348at 394.878 kb on + strand, within DVU0348at 394.882 kb on + strand, within DVU0348at 394.889 kb on + strand, within DVU0348at 394.904 kb on + strand, within DVU0348at 394.912 kb on - strand, within DVU0348at 394.991 kb on + strand, within DVU0348at 394.991 kb on + strand, within DVU0348at 395.024 kb on + strand, within DVU0348at 395.092 kb on - strand, within DVU0348at 395.185 kb on - strand, within DVU0348at 395.225 kb on + strand, within DVU0348at 395.286 kb on - strand, within DVU0348

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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393,374 + -0.5
393,409 - -0.6
393,416 + +0.1
393,481 + -2.1
393,559 - -0.7
393,566 + +1.6
393,566 + +0.0
393,574 - -0.2
393,574 - -0.0
393,592 + -0.1
393,592 + +0.2
393,600 - -0.4
393,600 - -0.0
393,600 - -0.2
393,696 - -0.1
393,779 - DVU0347 0.17 -0.4
393,789 - DVU0347 0.19 -0.3
393,792 - DVU0347 0.19 -0.5
393,809 - DVU0347 0.22 +0.3
393,859 + DVU0347 0.29 -0.6
393,867 - DVU0347 0.30 -1.1
393,876 - DVU0347 0.32 -0.2
394,039 - DVU0347 0.56 -0.3
394,118 - DVU0347 0.68 -2.2
394,209 + DVU0347 0.81 -0.7
394,226 - DVU0347 0.84 -1.1
394,281 + +0.8
394,309 - -0.1
394,319 - -0.1
394,384 - -0.4
394,385 - -0.2
394,459 + -1.0
394,468 + -0.1
394,476 - -0.4
394,555 - DVU0348 0.12 +0.1
394,598 + DVU0348 0.14 +0.2
394,636 - DVU0348 0.16 +0.3
394,646 - DVU0348 0.17 -0.3
394,646 - DVU0348 0.17 -0.9
394,646 - DVU0348 0.17 -1.0
394,684 + DVU0348 0.19 +0.3
394,709 + DVU0348 0.21 -0.6
394,722 - DVU0348 0.21 -0.2
394,781 - DVU0348 0.25 -0.8
394,789 + DVU0348 0.25 -0.0
394,789 + DVU0348 0.25 -0.4
394,797 - DVU0348 0.26 -0.5
394,816 + DVU0348 0.27 -1.4
394,819 - DVU0348 0.27 -0.5
394,821 + DVU0348 0.27 +0.0
394,823 + DVU0348 0.27 -0.0
394,878 + DVU0348 0.30 -1.1
394,882 + DVU0348 0.31 +0.2
394,889 + DVU0348 0.31 -1.4
394,904 + DVU0348 0.32 -0.7
394,912 - DVU0348 0.32 -0.7
394,991 + DVU0348 0.37 -0.5
394,991 + DVU0348 0.37 +0.5
395,024 + DVU0348 0.39 -0.3
395,092 - DVU0348 0.43 -0.1
395,185 - DVU0348 0.48 -0.4
395,225 + DVU0348 0.50 -2.2
395,286 - DVU0348 0.54 +0.1

Or see this region's nucleotide sequence