Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0280

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0279 and wbaZ-2 are separated by 312 nucleotideswbaZ-2 and DVU0281 are separated by 104 nucleotides DVU0279: DVU0279 - sulfate permease family protein (TIGR), at 322,378 to 324,084 DVU0279 DVU0280: wbaZ-2 - glycosyl transferase, group 1 family protein (TIGR), at 324,397 to 325,536 wbaZ-2 DVU0281: DVU0281 - exopolysaccharide biosynthesis protein, putative (TIGR), at 325,641 to 327,074 DVU0281 Position (kb) 324 325 326Strain fitness (log2 ratio) -2 -1 0 1 2at 323.469 kb on - strand, within DVU0279at 323.485 kb on - strand, within DVU0279at 323.544 kb on - strand, within DVU0279at 323.623 kb on - strand, within DVU0279at 323.655 kb on + strand, within DVU0279at 323.663 kb on - strand, within DVU0279at 323.663 kb on - strand, within DVU0279at 323.705 kb on - strand, within DVU0279at 323.710 kb on + strand, within DVU0279at 323.721 kb on + strand, within DVU0279at 323.736 kb on + strand, within DVU0279at 323.736 kb on - strand, within DVU0279at 323.852 kb on - strand, within DVU0279at 323.852 kb on - strand, within DVU0279at 323.884 kb on - strand, within DVU0279at 323.884 kb on - strand, within DVU0279at 323.906 kb on - strand, within DVU0279at 323.925 kb on + strandat 323.945 kb on - strandat 324.032 kb on + strandat 324.057 kb on + strandat 324.065 kb on - strandat 324.074 kb on + strandat 324.077 kb on - strandat 324.079 kb on + strandat 324.082 kb on - strandat 324.169 kb on - strandat 324.183 kb on + strandat 324.183 kb on + strandat 324.183 kb on + strandat 324.191 kb on - strandat 324.191 kb on - strandat 324.325 kb on - strandat 324.561 kb on + strand, within wbaZ-2at 324.640 kb on + strand, within wbaZ-2at 324.712 kb on + strand, within wbaZ-2at 324.712 kb on + strand, within wbaZ-2at 324.824 kb on - strand, within wbaZ-2at 324.868 kb on + strand, within wbaZ-2at 324.982 kb on + strand, within wbaZ-2at 325.131 kb on - strand, within wbaZ-2at 325.189 kb on + strand, within wbaZ-2at 325.196 kb on + strand, within wbaZ-2at 325.221 kb on - strand, within wbaZ-2at 325.221 kb on - strand, within wbaZ-2at 325.223 kb on + strand, within wbaZ-2at 325.235 kb on + strand, within wbaZ-2at 325.310 kb on - strand, within wbaZ-2at 325.310 kb on - strand, within wbaZ-2at 325.567 kb on + strandat 325.896 kb on + strand, within DVU0281at 326.087 kb on + strand, within DVU0281at 326.104 kb on - strand, within DVU0281at 326.242 kb on - strand, within DVU0281at 326.284 kb on - strand, within DVU0281

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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323,469 - DVU0279 0.64 -0.1
323,485 - DVU0279 0.65 -0.3
323,544 - DVU0279 0.68 +1.0
323,623 - DVU0279 0.73 -1.9
323,655 + DVU0279 0.75 -1.1
323,663 - DVU0279 0.75 -1.0
323,663 - DVU0279 0.75 -0.2
323,705 - DVU0279 0.78 +0.2
323,710 + DVU0279 0.78 +0.0
323,721 + DVU0279 0.79 -0.0
323,736 + DVU0279 0.80 -0.4
323,736 - DVU0279 0.80 -0.3
323,852 - DVU0279 0.86 +0.9
323,852 - DVU0279 0.86 -0.4
323,884 - DVU0279 0.88 -0.7
323,884 - DVU0279 0.88 -1.0
323,906 - DVU0279 0.90 +0.1
323,925 + -0.2
323,945 - -1.6
324,032 + +0.1
324,057 + -0.4
324,065 - +0.6
324,074 + -1.7
324,077 - +0.5
324,079 + +0.9
324,082 - -0.7
324,169 - +0.6
324,183 + -0.1
324,183 + -0.1
324,183 + +0.0
324,191 - +0.5
324,191 - +0.1
324,325 - -0.3
324,561 + wbaZ-2 DVU0280 0.14 +0.5
324,640 + wbaZ-2 DVU0280 0.21 +2.1
324,712 + wbaZ-2 DVU0280 0.28 -1.5
324,712 + wbaZ-2 DVU0280 0.28 -0.7
324,824 - wbaZ-2 DVU0280 0.37 +0.5
324,868 + wbaZ-2 DVU0280 0.41 -0.3
324,982 + wbaZ-2 DVU0280 0.51 -0.7
325,131 - wbaZ-2 DVU0280 0.64 -1.1
325,189 + wbaZ-2 DVU0280 0.69 +0.9
325,196 + wbaZ-2 DVU0280 0.70 +0.8
325,221 - wbaZ-2 DVU0280 0.72 -1.4
325,221 - wbaZ-2 DVU0280 0.72 -0.4
325,223 + wbaZ-2 DVU0280 0.72 -0.7
325,235 + wbaZ-2 DVU0280 0.74 -0.7
325,310 - wbaZ-2 DVU0280 0.80 +0.2
325,310 - wbaZ-2 DVU0280 0.80 -0.6
325,567 + -0.3
325,896 + DVU0281 0.18 -0.2
326,087 + DVU0281 0.31 -0.2
326,104 - DVU0281 0.32 -0.4
326,242 - DVU0281 0.42 -0.8
326,284 - DVU0281 0.45 -1.3

Or see this region's nucleotide sequence