Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0230 and DVU0231 are separated by 80 nucleotides DVU0231 and DVU0232 overlap by 8 nucleotides DVU0232 and DORF26446 are separated by 142 nucleotides
DVU0230: DVU0230 - transcriptional regulator cII, putative (TIGR), at 265,802 to 266,266
DVU0230
DVU0231: DVU0231 - hypothetical protein (TIGR), at 266,347 to 266,571
DVU0231
DVU0232: DVU0232 - hypothetical protein (TIGR), at 266,564 to 266,812
DVU0232
DORF26446: DORF26446 - no description, at 266,955 to 267,194
DORF26446
Position (kb) 266
267 Strain fitness (log2 ratio) -2
-1
0
1
2 at 265.606 kb on + strand at 265.728 kb on - strand at 265.728 kb on - strand at 265.729 kb on - strand at 265.730 kb on + strand at 265.739 kb on + strand at 265.745 kb on - strand at 265.772 kb on - strand at 265.810 kb on + strand at 265.874 kb on + strand, within DVU0230 at 265.895 kb on + strand, within DVU0230 at 265.900 kb on + strand, within DVU0230 at 265.940 kb on - strand, within DVU0230 at 265.940 kb on - strand, within DVU0230 at 266.024 kb on + strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.038 kb on - strand, within DVU0230 at 266.042 kb on - strand, within DVU0230 at 266.190 kb on - strand, within DVU0230 at 266.197 kb on + strand, within DVU0230 at 266.205 kb on - strand, within DVU0230 at 266.233 kb on - strand at 266.287 kb on + strand at 266.360 kb on + strand at 266.368 kb on - strand at 266.381 kb on + strand, within DVU0231 at 266.473 kb on + strand, within DVU0231 at 266.473 kb on + strand, within DVU0231 at 266.501 kb on + strand, within DVU0231 at 266.509 kb on - strand, within DVU0231 at 266.509 kb on - strand, within DVU0231 at 266.525 kb on + strand, within DVU0231 at 266.538 kb on - strand, within DVU0231 at 266.617 kb on + strand, within DVU0232 at 266.633 kb on - strand, within DVU0232 at 266.807 kb on + strand at 266.807 kb on + strand at 266.920 kb on - strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.935 kb on - strand at 266.942 kb on - strand at 267.059 kb on + strand, within DORF26446 at 267.211 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.281 kb on + strand at 267.489 kb on + strand at 267.491 kb on + strand at 267.508 kb on - strand at 267.615 kb on + strand at 267.674 kb on - strand at 267.681 kb on + strand at 267.728 kb on - strand at 267.743 kb on - strand at 267.769 kb on - strand at 267.779 kb on - strand at 267.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 265,606 + +2.3 265,728 - +0.3 265,728 - +0.5 265,729 - +0.0 265,730 + -0.5 265,739 + -0.1 265,745 - +0.7 265,772 - +0.1 265,810 + -0.6 265,874 + DVU0230 0.15 -0.3 265,895 + DVU0230 0.20 +0.3 265,900 + DVU0230 0.21 -0.5 265,940 - DVU0230 0.30 +1.1 265,940 - DVU0230 0.30 -0.1 266,024 + DVU0230 0.48 -0.5 266,032 - DVU0230 0.49 +1.1 266,032 - DVU0230 0.49 -1.1 266,032 - DVU0230 0.49 -0.6 266,038 - DVU0230 0.51 -2.2 266,042 - DVU0230 0.52 -1.0 266,190 - DVU0230 0.83 -0.1 266,197 + DVU0230 0.85 -1.4 266,205 - DVU0230 0.87 +0.4 266,233 - +0.5 266,287 + -1.0 266,360 + +0.1 266,368 - -1.2 266,381 + DVU0231 0.15 -0.2 266,473 + DVU0231 0.56 -0.9 266,473 + DVU0231 0.56 +0.9 266,501 + DVU0231 0.68 -0.3 266,509 - DVU0231 0.72 -1.1 266,509 - DVU0231 0.72 +0.1 266,525 + DVU0231 0.79 +0.4 266,538 - DVU0231 0.85 +0.1 266,617 + DVU0232 0.21 +0.3 266,633 - DVU0232 0.28 -1.9 266,807 + -0.5 266,807 + -0.4 266,920 - -1.4 266,922 + -1.0 266,922 + -0.3 266,922 + +1.4 266,922 + -0.1 266,930 - +0.2 266,930 - -0.7 266,930 - +0.6 266,930 - +1.4 266,930 - -0.2 266,935 - -0.2 266,942 - +0.1 267,059 + DORF26446 0.43 +0.2 267,211 + +0.5 267,221 + +0.0 267,221 + -0.3 267,221 + +0.6 267,221 + +0.1 267,221 + +0.5 267,229 - -1.1 267,229 - +0.3 267,229 - -0.7 267,281 + -2.0 267,489 + -1.5 267,491 + +0.6 267,508 - -0.2 267,615 + +0.4 267,674 - -0.6 267,681 + -0.1 267,728 - +0.1 267,743 - -0.0 267,769 - -0.6 267,779 - -0.4 267,812 - +0.3
Or see this region's nucleotide sequence