Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3127

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (60/30-60 mM)
3,273,564	+	pqiA	DVU3126	0.20	+0.5
3,273,603	+	pqiA	DVU3126	0.23	+2.0
3,273,609	-	pqiA	DVU3126	0.24	+1.1
3,273,656	-	pqiA	DVU3126	0.28	+0.2
3,273,670	-	pqiA	DVU3126	0.29	+0.5
3,273,712	+	pqiA	DVU3126	0.32	+0.0
3,273,720	-	pqiA	DVU3126	0.33	-0.5
3,273,720	-	pqiA	DVU3126	0.33	-0.1
3,273,782	-	pqiA	DVU3126	0.38	-0.2
3,273,864	-	pqiA	DVU3126	0.44	-0.2
3,273,874	-	pqiA	DVU3126	0.45	-0.1
3,273,895	-	pqiA	DVU3126	0.47	+0.0
3,273,945	-	pqiA	DVU3126	0.51	-0.7
3,274,037	-	pqiA	DVU3126	0.59	-0.3
3,274,064	+	pqiA	DVU3126	0.61	+0.3
3,274,066	+	pqiA	DVU3126	0.61	-1.0
3,274,082	-	pqiA	DVU3126	0.62	-0.2
3,274,157	-	pqiA	DVU3126	0.68	-2.2
3,274,162	-	pqiA	DVU3126	0.69	-0.9
3,274,164	+	pqiA	DVU3126	0.69	+1.7
3,274,164	+	pqiA	DVU3126	0.69	-0.5
3,274,172	-	pqiA	DVU3126	0.69	-0.4
3,274,223	-	pqiA	DVU3126	0.74	-1.1
3,274,326	+	pqiA	DVU3126	0.82	+1.0
3,274,334	-	pqiA	DVU3126	0.83	-0.5
3,274,334	-	pqiA	DVU3126	0.83	+0.2
3,274,339	-	pqiA	DVU3126	0.83	-0.5
3,274,411	-	pqiA	DVU3126	0.89	+0.7
3,274,470	+				+0.1
3,274,483	-				-1.1
3,274,495	+				-0.0
3,274,556	-				+1.1
3,274,563	+				-0.3
3,274,571	-				-0.5
3,274,588	+				-0.4
3,274,602	+				-0.4
3,274,609	+				-0.7
3,274,621	-				+0.0
3,274,675	-				-0.9
3,274,723	-	pqiB	DVU3127	0.11	-0.7
3,274,723	-	pqiB	DVU3127	0.11	+0.1
3,274,762	+	pqiB	DVU3127	0.14	-0.8
3,274,765	-	pqiB	DVU3127	0.14	+0.2
3,274,765	-	pqiB	DVU3127	0.14	-0.6
3,274,770	-	pqiB	DVU3127	0.14	+0.1
3,274,802	-	pqiB	DVU3127	0.16	-0.2
3,274,814	+	pqiB	DVU3127	0.17	-1.6
3,274,822	-	pqiB	DVU3127	0.17	+0.4
3,274,863	+	pqiB	DVU3127	0.20	-0.3
3,274,863	+	pqiB	DVU3127	0.20	-0.8
3,274,919	-	pqiB	DVU3127	0.23	+0.1
3,274,920	+	pqiB	DVU3127	0.23	+0.5
3,274,954	-	pqiB	DVU3127	0.26	-0.7
3,274,997	+	pqiB	DVU3127	0.28	+0.0
3,275,123	+	pqiB	DVU3127	0.36	-1.2
3,275,142	+	pqiB	DVU3127	0.37	-1.5
3,275,152	+	pqiB	DVU3127	0.38	-0.7
3,275,158	+	pqiB	DVU3127	0.38	-0.6
3,275,181	+	pqiB	DVU3127	0.39	-0.4
3,275,222	+	pqiB	DVU3127	0.42	+0.0
3,275,232	+	pqiB	DVU3127	0.43	+0.0
3,275,250	-	pqiB	DVU3127	0.44	-1.6
3,275,258	-	pqiB	DVU3127	0.44	-1.6
3,275,308	-	pqiB	DVU3127	0.47	-0.8
3,275,316	-	pqiB	DVU3127	0.48	-0.5
3,275,341	+	pqiB	DVU3127	0.49	-0.0
3,275,362	-	pqiB	DVU3127	0.51	-0.0
3,275,366	+	pqiB	DVU3127	0.51	+0.4
3,275,467	+	pqiB	DVU3127	0.57	-0.2
3,275,535	+	pqiB	DVU3127	0.61	-0.8
3,275,589	+	pqiB	DVU3127	0.64	-1.3
3,275,589	+	pqiB	DVU3127	0.64	-0.6
3,275,597	-	pqiB	DVU3127	0.65	-1.6
3,275,673	+	pqiB	DVU3127	0.70	-0.9
3,275,742	+	pqiB	DVU3127	0.74	+1.0
3,275,806	+	pqiB	DVU3127	0.78	-2.0
3,275,814	-	pqiB	DVU3127	0.78	-0.3
3,275,948	+	pqiB	DVU3127	0.86	-0.0
3,275,956	-	pqiB	DVU3127	0.87	+0.4
3,275,991	-	pqiB	DVU3127	0.89	-0.4
3,275,995	+	pqiB	DVU3127	0.89	-0.1
3,276,056	+				+0.4
3,276,078	+				-0.0
3,276,114	-				-1.5
3,276,127	-				-0.9
3,276,202	-				+0.0
3,276,207	-				-0.0
3,276,250	+		DVU3128	0.15	-0.0
3,276,258	-		DVU3128	0.16	-0.3
3,276,258	-		DVU3128	0.16	+0.1
3,276,258	-		DVU3128	0.16	-1.1
3,276,275	+		DVU3128	0.19	-0.2
3,276,283	-		DVU3128	0.20	-0.2
3,276,288	+		DVU3128	0.21	-0.2
3,276,310	-		DVU3128	0.25	-1.4
3,276,356	-		DVU3128	0.32	-0.2
3,276,427	+		DVU3128	0.44	-0.1
3,276,469	-		DVU3128	0.50	+0.7
3,276,474	-		DVU3128	0.51	+0.1
3,276,485	+		DVU3128	0.53	-0.1
3,276,490	+		DVU3128	0.54	-0.3
3,276,493	-		DVU3128	0.54	+1.5
3,276,498	-		DVU3128	0.55	+1.0
3,276,555	-		DVU3128	0.64	+0.1
3,276,587	-		DVU3128	0.69	-0.5
3,276,605	+		DVU3128	0.72	+0.1
3,276,608	-		DVU3128	0.73	-1.3
3,276,613	-		DVU3128	0.74	-0.6
3,276,666	+		DVU3128	0.82	-0.4
3,276,671	+		DVU3128	0.83	+0.0
3,276,680	-		DVU3128	0.84	+0.8
3,276,698	+		DVU3128	0.87	-0.5
3,276,698	+		DVU3128	0.87	+0.4
3,276,706	-		DVU3128	0.89	-0.5
3,276,777	-				+0.5
3,276,892	+		DVU3129	0.61	-0.4
3,276,903	+		DVU3129	0.68	-0.2
3,276,958	-				-0.8
3,276,978	+				-0.7
3,276,978	+				+0.0
3,277,011	-				+0.2