Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2012
Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
2,090,295 | + | +0.3 | |||
2,090,295 | + | -0.5 | |||
2,090,295 | + | -0.8 | |||
2,090,295 | + | -0.2 | |||
2,090,550 | - | DVU2012 | 0.81 | -0.7 | |
2,090,815 | - | +0.8 | |||
2,090,829 | - | +1.4 | |||
2,090,829 | - | -0.4 | |||
2,090,834 | + | +0.1 | |||
2,090,850 | - | DVU2013 | 0.11 | +0.1 | |
2,090,857 | + | DVU2013 | 0.11 | -0.2 | |
2,090,958 | + | DVU2013 | 0.17 | +0.2 | |
2,090,961 | - | DVU2013 | 0.18 | -0.2 | |
2,091,089 | + | DVU2013 | 0.25 | +0.3 | |
2,091,107 | + | DVU2013 | 0.26 | +0.6 | |
2,091,133 | + | DVU2013 | 0.28 | -0.4 | |
2,091,181 | + | DVU2013 | 0.31 | +0.6 | |
2,091,308 | + | DVU2013 | 0.39 | -0.9 | |
2,091,347 | - | DVU2013 | 0.41 | -1.1 | |
2,091,347 | - | DVU2013 | 0.41 | +0.2 | |
2,091,387 | + | DVU2013 | 0.43 | +0.4 | |
2,091,387 | + | DVU2013 | 0.43 | -0.1 | |
2,091,387 | + | DVU2013 | 0.43 | -0.2 | |
2,091,411 | + | DVU2013 | 0.45 | +0.4 | |
2,091,536 | + | DVU2013 | 0.52 | +0.1 | |
2,091,544 | - | DVU2013 | 0.53 | -0.1 |
Or see this region's nucleotide sequence