Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1933
Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
2,006,058 | - | -0.0 | |||
2,006,094 | + | -0.1 | |||
2,006,207 | - | +1.2 | |||
2,006,207 | - | -0.4 | |||
2,006,496 | + | +1.6 | |||
2,006,501 | + | +0.2 | |||
2,006,782 | + | DVU1933 | 0.47 | +1.1 | |
2,006,959 | - | DVU1933 | 0.81 | -1.3 | |
2,007,032 | - | -0.1 | |||
2,007,438 | - | phnE | DVU1934 | 0.36 | -1.3 |
2,007,561 | + | phnE | DVU1934 | 0.51 | -0.1 |
2,007,561 | + | phnE | DVU1934 | 0.51 | -0.8 |
2,007,672 | + | phnE | DVU1934 | 0.65 | -0.3 |
2,007,672 | + | phnE | DVU1934 | 0.65 | +0.4 |
2,007,680 | - | phnE | DVU1934 | 0.66 | -0.5 |
2,007,680 | - | phnE | DVU1934 | 0.66 | -0.2 |
2,007,680 | - | phnE | DVU1934 | 0.66 | +0.2 |
2,007,718 | - | phnE | DVU1934 | 0.71 | +0.4 |
2,007,838 | - | phnE | DVU1934 | 0.86 | +0.0 |
2,007,840 | - | phnE | DVU1934 | 0.86 | +0.5 |
Or see this region's nucleotide sequence