Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftsH and folP overlap by 4 nucleotides folP and DVU1280 are separated by 8 nucleotides DVU1280 and DVU1281 are separated by 1 nucleotides DVU1281 and glmM are separated by 59 nucleotides
DVU1278: ftsH - cell division protein FtsH (TIGR), at 1,369,986 to 1,371,956
ftsH
DVU1279: folP - dihydropteroate synthase (TIGR), at 1,371,953 to 1,372,813
folP
DVU1280: DVU1280 - conserved hypothetical protein TIGR00159 (TIGR), at 1,372,822 to 1,373,568
DVU1280
DVU1281: DVU1281 - conserved hypothetical protein (TIGR), at 1,373,570 to 1,374,472
DVU1281
DVU1282: glmM - phosphoglucosamine mutase (TIGR), at 1,374,532 to 1,375,884
glmM
Position (kb)
1372
1373
1374 Strain fitness (log2 ratio)
-1
0
1
2 at 1371.911 kb on - strand at 1372.780 kb on - strand at 1372.780 kb on - strand at 1372.780 kb on - strand at 1372.780 kb on - strand at 1372.999 kb on + strand, within DVU1280 at 1373.169 kb on - strand, within DVU1280 at 1373.348 kb on - strand, within DVU1280 at 1373.419 kb on + strand, within DVU1280 at 1373.524 kb on - strand at 1373.816 kb on + strand, within DVU1281 at 1373.841 kb on - strand, within DVU1281 at 1374.004 kb on - strand, within DVU1281 at 1374.026 kb on - strand, within DVU1281 at 1374.135 kb on + strand, within DVU1281 at 1374.166 kb on + strand, within DVU1281 at 1374.261 kb on - strand, within DVU1281 at 1374.293 kb on - strand, within DVU1281 at 1374.315 kb on + strand, within DVU1281 at 1374.325 kb on + strand, within DVU1281 at 1374.331 kb on - strand, within DVU1281 at 1374.345 kb on + strand, within DVU1281 at 1374.363 kb on + strand, within DVU1281 at 1374.409 kb on - strand at 1374.428 kb on - strand at 1374.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 1,371,911 - +0.5 1,372,780 - -0.4 1,372,780 - -0.1 1,372,780 - +0.2 1,372,780 - -0.1 1,372,999 + DVU1280 0.24 -0.6 1,373,169 - DVU1280 0.46 -0.8 1,373,348 - DVU1280 0.70 -0.4 1,373,419 + DVU1280 0.80 -0.5 1,373,524 - +0.4 1,373,816 + DVU1281 0.27 -0.9 1,373,841 - DVU1281 0.30 -0.2 1,374,004 - DVU1281 0.48 +1.1 1,374,026 - DVU1281 0.50 -0.2 1,374,135 + DVU1281 0.63 -1.3 1,374,166 + DVU1281 0.66 -0.2 1,374,261 - DVU1281 0.77 -0.2 1,374,293 - DVU1281 0.80 -0.1 1,374,315 + DVU1281 0.83 -0.5 1,374,325 + DVU1281 0.84 +0.2 1,374,331 - DVU1281 0.84 -0.2 1,374,345 + DVU1281 0.86 +1.8 1,374,363 + DVU1281 0.88 +0.5 1,374,409 - -0.1 1,374,428 - +1.1 1,374,444 - -0.3
Or see this region's nucleotide sequence