Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1969 and DVU1970 are separated by 8 nucleotides DVU1970 and DORF14650 are separated by 72 nucleotides DORF14650 and DVU1971 are separated by 242 nucleotides
DVU1969: DVU1969 - hypothetical protein (TIGR), at 2,044,318 to 2,045,013
DVU1969
DVU1970: DVU1970 - response regulator (TIGR), at 2,045,022 to 2,045,429
DVU1970
DORF14650: DORF14650 - no description, at 2,045,502 to 2,045,651
DORF14650
DVU1971: DVU1971 - conserved domain protein (TIGR), at 2,045,894 to 2,046,457
DVU1971
Position (kb)
2045
2046 Strain fitness (log2 ratio)
-2
-1
0
1 at 2044.511 kb on - strand, within DVU1969 at 2044.548 kb on + strand, within DVU1969 at 2044.574 kb on + strand, within DVU1969 at 2044.609 kb on + strand, within DVU1969 at 2044.683 kb on + strand, within DVU1969 at 2044.721 kb on + strand, within DVU1969 at 2044.756 kb on + strand, within DVU1969 at 2044.806 kb on - strand, within DVU1969 at 2044.806 kb on - strand, within DVU1969 at 2044.861 kb on - strand, within DVU1969 at 2044.956 kb on + strand at 2044.956 kb on + strand at 2044.964 kb on - strand at 2045.008 kb on + strand at 2045.082 kb on + strand, within DVU1970 at 2045.181 kb on + strand, within DVU1970 at 2045.339 kb on - strand, within DVU1970 at 2045.339 kb on - strand, within DVU1970 at 2045.351 kb on + strand, within DVU1970 at 2045.351 kb on + strand, within DVU1970 at 2045.351 kb on + strand, within DVU1970 at 2045.357 kb on - strand, within DVU1970 at 2045.357 kb on - strand, within DVU1970 at 2045.369 kb on - strand, within DVU1970 at 2045.369 kb on - strand, within DVU1970 at 2045.373 kb on + strand, within DVU1970 at 2045.399 kb on + strand at 2045.444 kb on + strand at 2045.525 kb on + strand, within DORF14650 at 2045.601 kb on - strand, within DORF14650 at 2045.626 kb on + strand, within DORF14650 at 2045.644 kb on - strand at 2045.655 kb on - strand at 2045.655 kb on - strand at 2045.689 kb on + strand at 2045.757 kb on + strand at 2045.764 kb on + strand at 2045.796 kb on + strand at 2045.804 kb on + strand at 2045.811 kb on - strand at 2045.867 kb on - strand at 2045.990 kb on - strand, within DVU1971 at 2046.140 kb on + strand, within DVU1971 at 2046.148 kb on - strand, within DVU1971 at 2046.148 kb on - strand, within DVU1971 at 2046.199 kb on + strand, within DVU1971 at 2046.240 kb on + strand, within DVU1971 at 2046.240 kb on + strand, within DVU1971 at 2046.248 kb on - strand, within DVU1971 at 2046.354 kb on + strand, within DVU1971 at 2046.389 kb on + strand, within DVU1971 at 2046.428 kb on - strand at 2046.428 kb on - strand at 2046.437 kb on + strand at 2046.463 kb on + strand at 2046.463 kb on + strand at 2046.491 kb on + strand at 2046.499 kb on - strand at 2046.502 kb on + strand at 2046.516 kb on + strand at 2046.556 kb on - strand at 2046.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 2,044,511 - DVU1969 0.28 -0.2 2,044,548 + DVU1969 0.33 -2.1 2,044,574 + DVU1969 0.37 +1.5 2,044,609 + DVU1969 0.42 +0.2 2,044,683 + DVU1969 0.52 +0.5 2,044,721 + DVU1969 0.58 +0.6 2,044,756 + DVU1969 0.63 -0.2 2,044,806 - DVU1969 0.70 -0.5 2,044,806 - DVU1969 0.70 -0.1 2,044,861 - DVU1969 0.78 -0.2 2,044,956 + -1.5 2,044,956 + -0.1 2,044,964 - -0.5 2,045,008 + -0.2 2,045,082 + DVU1970 0.15 -0.5 2,045,181 + DVU1970 0.39 +0.1 2,045,339 - DVU1970 0.78 +0.4 2,045,339 - DVU1970 0.78 -0.3 2,045,351 + DVU1970 0.81 -0.2 2,045,351 + DVU1970 0.81 -0.3 2,045,351 + DVU1970 0.81 +0.2 2,045,357 - DVU1970 0.82 -0.1 2,045,357 - DVU1970 0.82 +0.2 2,045,369 - DVU1970 0.85 -0.5 2,045,369 - DVU1970 0.85 -0.2 2,045,373 + DVU1970 0.86 -0.2 2,045,399 + +0.1 2,045,444 + +0.4 2,045,525 + DORF14650 0.15 -0.6 2,045,601 - DORF14650 0.66 -0.8 2,045,626 + DORF14650 0.83 -0.2 2,045,644 - -0.4 2,045,655 - -0.1 2,045,655 - +0.9 2,045,689 + -0.1 2,045,757 + -0.3 2,045,764 + +0.2 2,045,796 + -0.0 2,045,804 + -0.5 2,045,811 - -0.2 2,045,867 - -0.9 2,045,990 - DVU1971 0.17 -0.1 2,046,140 + DVU1971 0.44 +0.1 2,046,148 - DVU1971 0.45 +0.2 2,046,148 - DVU1971 0.45 -0.1 2,046,199 + DVU1971 0.54 +0.4 2,046,240 + DVU1971 0.61 -0.8 2,046,240 + DVU1971 0.61 -2.0 2,046,248 - DVU1971 0.63 -0.6 2,046,354 + DVU1971 0.82 -0.1 2,046,389 + DVU1971 0.88 -0.6 2,046,428 - +0.6 2,046,428 - +0.5 2,046,437 + -0.2 2,046,463 + +0.2 2,046,463 + -0.4 2,046,491 + -0.2 2,046,499 - +0.2 2,046,502 + -0.1 2,046,516 + -0.4 2,046,556 - +0.3 2,046,649 - -0.2
Or see this region's nucleotide sequence