Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5006

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5005 and Psyr_5006 are separated by 191 nucleotidesPsyr_5006 and Psyr_5007 are separated by 20 nucleotides Psyr_5005: Psyr_5005 - protein of unknown function DUF945, at 5,936,543 to 5,938,108 _5005 Psyr_5006: Psyr_5006 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 5,938,300 to 5,938,989 _5006 Psyr_5007: Psyr_5007 - Aldo/keto reductase, at 5,939,010 to 5,940,017 _5007 Position (kb) 5938 5939Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5937.337 kb on - strand, within Psyr_5005at 5937.337 kb on - strand, within Psyr_5005at 5937.337 kb on - strand, within Psyr_5005at 5937.359 kb on - strand, within Psyr_5005at 5937.580 kb on - strand, within Psyr_5005at 5937.951 kb on + strand, within Psyr_5005at 5937.951 kb on + strand, within Psyr_5005at 5937.951 kb on + strand, within Psyr_5005at 5937.952 kb on - strandat 5937.952 kb on - strandat 5938.005 kb on - strandat 5938.006 kb on + strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.019 kb on - strandat 5938.019 kb on - strandat 5938.024 kb on + strandat 5938.103 kb on + strandat 5938.103 kb on + strandat 5938.103 kb on + strandat 5938.104 kb on - strandat 5938.167 kb on + strandat 5938.241 kb on - strandat 5938.384 kb on + strand, within Psyr_5006at 5938.384 kb on + strand, within Psyr_5006at 5938.384 kb on + strand, within Psyr_5006at 5938.385 kb on - strand, within Psyr_5006at 5938.486 kb on + strand, within Psyr_5006at 5938.487 kb on - strand, within Psyr_5006at 5938.623 kb on + strand, within Psyr_5006at 5938.626 kb on + strand, within Psyr_5006at 5938.626 kb on + strand, within Psyr_5006at 5938.627 kb on - strand, within Psyr_5006at 5938.627 kb on - strand, within Psyr_5006at 5938.627 kb on - strand, within Psyr_5006at 5938.663 kb on + strand, within Psyr_5006at 5938.663 kb on + strand, within Psyr_5006at 5938.664 kb on - strand, within Psyr_5006at 5938.664 kb on - strand, within Psyr_5006at 5938.664 kb on - strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.871 kb on - strand, within Psyr_5006at 5938.871 kb on - strand, within Psyr_5006at 5938.871 kb on - strand, within Psyr_5006at 5938.912 kb on + strand, within Psyr_5006at 5938.913 kb on - strand, within Psyr_5006at 5939.017 kb on - strandat 5939.112 kb on - strand, within Psyr_5007at 5939.166 kb on + strand, within Psyr_5007at 5939.166 kb on + strand, within Psyr_5007at 5939.166 kb on + strand, within Psyr_5007at 5939.167 kb on - strand, within Psyr_5007at 5939.167 kb on - strand, within Psyr_5007at 5939.167 kb on - strand, within Psyr_5007at 5939.167 kb on - strand, within Psyr_5007at 5939.167 kb on - strand, within Psyr_5007at 5939.346 kb on + strand, within Psyr_5007at 5939.347 kb on - strand, within Psyr_5007at 5939.347 kb on - strand, within Psyr_5007at 5939.347 kb on - strand, within Psyr_5007at 5939.354 kb on + strand, within Psyr_5007at 5939.355 kb on - strand, within Psyr_5007at 5939.355 kb on - strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.358 kb on + strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.359 kb on - strand, within Psyr_5007at 5939.361 kb on + strand, within Psyr_5007at 5939.361 kb on + strand, within Psyr_5007at 5939.361 kb on + strand, within Psyr_5007at 5939.362 kb on - strand, within Psyr_5007at 5939.436 kb on - strand, within Psyr_5007at 5939.544 kb on + strand, within Psyr_5007at 5939.544 kb on + strand, within Psyr_5007at 5939.544 kb on + strand, within Psyr_5007at 5939.544 kb on + strand, within Psyr_5007at 5939.545 kb on - strand, within Psyr_5007at 5939.619 kb on + strand, within Psyr_5007at 5939.619 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.651 kb on + strand, within Psyr_5007at 5939.652 kb on - strand, within Psyr_5007at 5939.652 kb on - strand, within Psyr_5007at 5939.652 kb on - strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.655 kb on + strand, within Psyr_5007at 5939.656 kb on - strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.769 kb on + strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.770 kb on - strand, within Psyr_5007at 5939.883 kb on + strand, within Psyr_5007at 5939.883 kb on + strand, within Psyr_5007at 5939.884 kb on - strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.885 kb on + strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007at 5939.886 kb on - strand, within Psyr_5007

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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5,937,337 - Psyr_5005 0.51 -2.8
5,937,337 - Psyr_5005 0.51 -0.4
5,937,337 - Psyr_5005 0.51 -1.4
5,937,359 - Psyr_5005 0.52 -2.2
5,937,580 - Psyr_5005 0.66 -0.6
5,937,951 + Psyr_5005 0.90 -1.7
5,937,951 + Psyr_5005 0.90 -0.3
5,937,951 + Psyr_5005 0.90 -0.4
5,937,952 - -0.4
5,937,952 - +0.2
5,938,005 - -1.7
5,938,006 + -0.3
5,938,007 - -0.4
5,938,007 - +0.4
5,938,007 - -0.6
5,938,007 - +0.0
5,938,007 - -1.3
5,938,007 - +0.2
5,938,007 - +2.9
5,938,007 - -2.3
5,938,007 - -1.4
5,938,018 + +0.2
5,938,018 + -1.5
5,938,018 + -1.0
5,938,018 + -3.1
5,938,018 + -1.1
5,938,018 + -1.5
5,938,018 + +1.4
5,938,018 + -2.2
5,938,019 - +1.2
5,938,019 - +0.5
5,938,024 + -1.2
5,938,103 + -1.3
5,938,103 + -2.5
5,938,103 + -1.5
5,938,104 - -1.0
5,938,167 + -1.0
5,938,241 - +1.0
5,938,384 + Psyr_5006 0.12 -0.4
5,938,384 + Psyr_5006 0.12 -1.3
5,938,384 + Psyr_5006 0.12 +0.2
5,938,385 - Psyr_5006 0.12 -0.4
5,938,486 + Psyr_5006 0.27 -0.4
5,938,487 - Psyr_5006 0.27 -1.8
5,938,623 + Psyr_5006 0.47 +0.0
5,938,626 + Psyr_5006 0.47 -2.2
5,938,626 + Psyr_5006 0.47 -0.4
5,938,627 - Psyr_5006 0.47 -0.7
5,938,627 - Psyr_5006 0.47 -0.4
5,938,627 - Psyr_5006 0.47 -1.4
5,938,663 + Psyr_5006 0.53 +0.0
5,938,663 + Psyr_5006 0.53 +0.0
5,938,664 - Psyr_5006 0.53 +1.3
5,938,664 - Psyr_5006 0.53 +0.1
5,938,664 - Psyr_5006 0.53 -1.3
5,938,870 + Psyr_5006 0.83 -0.4
5,938,870 + Psyr_5006 0.83 -0.5
5,938,870 + Psyr_5006 0.83 -0.3
5,938,870 + Psyr_5006 0.83 -0.9
5,938,870 + Psyr_5006 0.83 -0.6
5,938,870 + Psyr_5006 0.83 -1.0
5,938,871 - Psyr_5006 0.83 +0.7
5,938,871 - Psyr_5006 0.83 +0.1
5,938,871 - Psyr_5006 0.83 +0.9
5,938,912 + Psyr_5006 0.89 -1.3
5,938,913 - Psyr_5006 0.89 +0.6
5,939,017 - +0.4
5,939,112 - Psyr_5007 0.10 +0.3
5,939,166 + Psyr_5007 0.15 +1.2
5,939,166 + Psyr_5007 0.15 -0.9
5,939,166 + Psyr_5007 0.15 -2.1
5,939,167 - Psyr_5007 0.16 -0.2
5,939,167 - Psyr_5007 0.16 +0.8
5,939,167 - Psyr_5007 0.16 -1.8
5,939,167 - Psyr_5007 0.16 -0.4
5,939,167 - Psyr_5007 0.16 -0.6
5,939,346 + Psyr_5007 0.33 -0.0
5,939,347 - Psyr_5007 0.33 +0.8
5,939,347 - Psyr_5007 0.33 +1.0
5,939,347 - Psyr_5007 0.33 +1.5
5,939,354 + Psyr_5007 0.34 +0.4
5,939,355 - Psyr_5007 0.34 +1.9
5,939,355 - Psyr_5007 0.34 -1.9
5,939,358 + Psyr_5007 0.35 +1.5
5,939,358 + Psyr_5007 0.35 -0.2
5,939,358 + Psyr_5007 0.35 -0.5
5,939,358 + Psyr_5007 0.35 -0.5
5,939,358 + Psyr_5007 0.35 -0.6
5,939,358 + Psyr_5007 0.35 +1.2
5,939,358 + Psyr_5007 0.35 -2.0
5,939,358 + Psyr_5007 0.35 +1.7
5,939,358 + Psyr_5007 0.35 +0.4
5,939,358 + Psyr_5007 0.35 +0.5
5,939,358 + Psyr_5007 0.35 +0.2
5,939,358 + Psyr_5007 0.35 -0.8
5,939,358 + Psyr_5007 0.35 -0.2
5,939,358 + Psyr_5007 0.35 -0.8
5,939,358 + Psyr_5007 0.35 -0.3
5,939,358 + Psyr_5007 0.35 -0.2
5,939,358 + Psyr_5007 0.35 +0.3
5,939,358 + Psyr_5007 0.35 -0.3
5,939,358 + Psyr_5007 0.35 +1.0
5,939,358 + Psyr_5007 0.35 +0.2
5,939,359 - Psyr_5007 0.35 +1.2
5,939,359 - Psyr_5007 0.35 +1.2
5,939,359 - Psyr_5007 0.35 +0.2
5,939,359 - Psyr_5007 0.35 +0.4
5,939,359 - Psyr_5007 0.35 +2.7
5,939,359 - Psyr_5007 0.35 +0.8
5,939,359 - Psyr_5007 0.35 -0.8
5,939,359 - Psyr_5007 0.35 -2.7
5,939,359 - Psyr_5007 0.35 +0.1
5,939,359 - Psyr_5007 0.35 -0.8
5,939,359 - Psyr_5007 0.35 +0.3
5,939,359 - Psyr_5007 0.35 +2.0
5,939,359 - Psyr_5007 0.35 -1.2
5,939,359 - Psyr_5007 0.35 -0.7
5,939,359 - Psyr_5007 0.35 -0.7
5,939,359 - Psyr_5007 0.35 -0.7
5,939,359 - Psyr_5007 0.35 -1.1
5,939,359 - Psyr_5007 0.35 -1.9
5,939,359 - Psyr_5007 0.35 +0.0
5,939,359 - Psyr_5007 0.35 +0.5
5,939,359 - Psyr_5007 0.35 +0.4
5,939,359 - Psyr_5007 0.35 -0.3
5,939,359 - Psyr_5007 0.35 -0.9
5,939,361 + Psyr_5007 0.35 -0.2
5,939,361 + Psyr_5007 0.35 +0.3
5,939,361 + Psyr_5007 0.35 +1.7
5,939,362 - Psyr_5007 0.35 -0.3
5,939,436 - Psyr_5007 0.42 -1.4
5,939,544 + Psyr_5007 0.53 -0.1
5,939,544 + Psyr_5007 0.53 -0.4
5,939,544 + Psyr_5007 0.53 +1.0
5,939,544 + Psyr_5007 0.53 -1.0
5,939,545 - Psyr_5007 0.53 -1.2
5,939,619 + Psyr_5007 0.60 -0.8
5,939,619 + Psyr_5007 0.60 -0.8
5,939,651 + Psyr_5007 0.64 -0.3
5,939,651 + Psyr_5007 0.64 -2.0
5,939,651 + Psyr_5007 0.64 -0.8
5,939,651 + Psyr_5007 0.64 -0.0
5,939,651 + Psyr_5007 0.64 -0.6
5,939,651 + Psyr_5007 0.64 -0.2
5,939,651 + Psyr_5007 0.64 -0.5
5,939,651 + Psyr_5007 0.64 +0.7
5,939,651 + Psyr_5007 0.64 +0.5
5,939,652 - Psyr_5007 0.64 +1.2
5,939,652 - Psyr_5007 0.64 -2.7
5,939,652 - Psyr_5007 0.64 +1.0
5,939,655 + Psyr_5007 0.64 -0.7
5,939,655 + Psyr_5007 0.64 -0.1
5,939,655 + Psyr_5007 0.64 -0.9
5,939,655 + Psyr_5007 0.64 +0.5
5,939,655 + Psyr_5007 0.64 -1.3
5,939,655 + Psyr_5007 0.64 +0.4
5,939,655 + Psyr_5007 0.64 +0.2
5,939,655 + Psyr_5007 0.64 -0.1
5,939,656 - Psyr_5007 0.64 -0.7
5,939,769 + Psyr_5007 0.75 +1.2
5,939,769 + Psyr_5007 0.75 -1.2
5,939,769 + Psyr_5007 0.75 -0.3
5,939,769 + Psyr_5007 0.75 -0.3
5,939,769 + Psyr_5007 0.75 +0.2
5,939,769 + Psyr_5007 0.75 +0.2
5,939,769 + Psyr_5007 0.75 -1.0
5,939,769 + Psyr_5007 0.75 -2.0
5,939,769 + Psyr_5007 0.75 +0.1
5,939,769 + Psyr_5007 0.75 -0.6
5,939,769 + Psyr_5007 0.75 -1.6
5,939,769 + Psyr_5007 0.75 -0.7
5,939,769 + Psyr_5007 0.75 -1.2
5,939,770 - Psyr_5007 0.75 -0.8
5,939,770 - Psyr_5007 0.75 -0.8
5,939,770 - Psyr_5007 0.75 +1.6
5,939,770 - Psyr_5007 0.75 +0.4
5,939,770 - Psyr_5007 0.75 -0.0
5,939,770 - Psyr_5007 0.75 +0.2
5,939,770 - Psyr_5007 0.75 -0.4
5,939,770 - Psyr_5007 0.75 -0.8
5,939,770 - Psyr_5007 0.75 +2.1
5,939,883 + Psyr_5007 0.87 -1.3
5,939,883 + Psyr_5007 0.87 +0.7
5,939,884 - Psyr_5007 0.87 +0.3
5,939,885 + Psyr_5007 0.87 +0.6
5,939,885 + Psyr_5007 0.87 -1.1
5,939,885 + Psyr_5007 0.87 -3.1
5,939,885 + Psyr_5007 0.87 -3.3
5,939,885 + Psyr_5007 0.87 -1.4
5,939,885 + Psyr_5007 0.87 -0.9
5,939,885 + Psyr_5007 0.87 +1.3
5,939,886 - Psyr_5007 0.87 +0.7
5,939,886 - Psyr_5007 0.87 +0.4
5,939,886 - Psyr_5007 0.87 -1.3
5,939,886 - Psyr_5007 0.87 +0.8
5,939,886 - Psyr_5007 0.87 +0.1
5,939,886 - Psyr_5007 0.87 +0.0

Or see this region's nucleotide sequence