Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4934 and Psyr_4935 are separated by 242 nucleotides Psyr_4935 and Psyr_4936 are separated by 80 nucleotides Psyr_4936 and Psyr_4937 are separated by 164 nucleotides
Psyr_4934: Psyr_4934 - Aminoglycoside phosphotransferase:Aminotransferase class-III, at 5,847,117 to 5,850,029
_4934
Psyr_4935: Psyr_4935 - dTDP-glucose 4,6-dehydratase, at 5,850,272 to 5,851,354
_4935
Psyr_4936: Psyr_4936 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 5,851,435 to 5,851,980
_4936
Psyr_4937: Psyr_4937 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,852,145 to 5,853,959
_4937
Position (kb) 5850
5851
5852 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.730 kb on + strand, within Psyr_4934 at 5849.731 kb on - strand, within Psyr_4934 at 5849.731 kb on - strand, within Psyr_4934 at 5849.731 kb on - strand, within Psyr_4934 at 5849.778 kb on - strand at 5849.778 kb on - strand at 5849.863 kb on + strand at 5849.864 kb on - strand at 5849.942 kb on - strand at 5850.099 kb on - strand at 5850.099 kb on - strand at 5850.099 kb on - strand at 5850.099 kb on - strand at 5850.111 kb on + strand at 5850.111 kb on + strand at 5850.111 kb on + strand at 5850.111 kb on + strand at 5850.111 kb on + strand at 5850.112 kb on - strand at 5850.113 kb on + strand at 5850.114 kb on - strand at 5850.233 kb on + strand at 5850.234 kb on - strand at 5850.234 kb on - strand at 5850.234 kb on - strand at 5850.243 kb on + strand at 5850.244 kb on - strand at 5850.244 kb on - strand at 5850.244 kb on - strand at 5850.280 kb on - strand at 5850.333 kb on + strand at 5850.377 kb on + strand at 5850.378 kb on - strand at 5850.584 kb on + strand, within Psyr_4935 at 5850.584 kb on + strand, within Psyr_4935 at 5850.584 kb on + strand, within Psyr_4935 at 5850.584 kb on + strand, within Psyr_4935 at 5850.585 kb on - strand, within Psyr_4935 at 5850.585 kb on - strand, within Psyr_4935 at 5850.585 kb on - strand, within Psyr_4935 at 5850.661 kb on + strand, within Psyr_4935 at 5850.662 kb on - strand, within Psyr_4935 at 5850.662 kb on - strand, within Psyr_4935 at 5850.662 kb on - strand, within Psyr_4935 at 5850.680 kb on + strand, within Psyr_4935 at 5850.681 kb on - strand, within Psyr_4935 at 5850.681 kb on - strand, within Psyr_4935 at 5850.681 kb on - strand, within Psyr_4935 at 5850.728 kb on + strand, within Psyr_4935 at 5850.729 kb on - strand, within Psyr_4935 at 5850.729 kb on - strand, within Psyr_4935 at 5850.729 kb on - strand, within Psyr_4935 at 5850.746 kb on + strand, within Psyr_4935 at 5850.747 kb on - strand, within Psyr_4935 at 5850.796 kb on + strand, within Psyr_4935 at 5850.796 kb on + strand, within Psyr_4935 at 5850.796 kb on + strand, within Psyr_4935 at 5850.800 kb on + strand, within Psyr_4935 at 5850.800 kb on + strand, within Psyr_4935 at 5850.801 kb on - strand, within Psyr_4935 at 5850.801 kb on - strand, within Psyr_4935 at 5850.801 kb on - strand, within Psyr_4935 at 5850.839 kb on + strand, within Psyr_4935 at 5850.840 kb on - strand, within Psyr_4935 at 5850.950 kb on + strand, within Psyr_4935 at 5850.950 kb on + strand, within Psyr_4935 at 5850.950 kb on + strand, within Psyr_4935 at 5850.950 kb on + strand, within Psyr_4935 at 5850.951 kb on - strand, within Psyr_4935 at 5850.951 kb on - strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.013 kb on + strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.014 kb on - strand, within Psyr_4935 at 5851.064 kb on - strand, within Psyr_4935 at 5851.118 kb on + strand, within Psyr_4935 at 5851.118 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.136 kb on + strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.137 kb on - strand, within Psyr_4935 at 5851.169 kb on + strand, within Psyr_4935 at 5851.259 kb on + strand at 5851.305 kb on - strand at 5851.336 kb on + strand at 5851.410 kb on + strand at 5851.410 kb on + strand at 5851.410 kb on + strand at 5851.411 kb on - strand at 5851.411 kb on - strand at 5852.042 kb on - strand at 5852.042 kb on - strand at 5852.044 kb on + strand at 5852.044 kb on + strand at 5852.044 kb on + strand at 5852.045 kb on - strand at 5852.253 kb on + strand at 5852.254 kb on - strand at 5852.301 kb on + strand at 5852.301 kb on + strand at 5852.301 kb on + strand at 5852.301 kb on + strand at 5852.302 kb on - strand at 5852.302 kb on - strand at 5852.302 kb on - strand at 5852.302 kb on - strand at 5852.302 kb on - strand at 5852.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 5,849,730 + Psyr_4934 0.90 +0.1 5,849,730 + Psyr_4934 0.90 +1.3 5,849,730 + Psyr_4934 0.90 -0.5 5,849,730 + Psyr_4934 0.90 +0.6 5,849,730 + Psyr_4934 0.90 +0.1 5,849,730 + Psyr_4934 0.90 -0.7 5,849,730 + Psyr_4934 0.90 -1.1 5,849,731 - Psyr_4934 0.90 -0.0 5,849,731 - Psyr_4934 0.90 -0.2 5,849,731 - Psyr_4934 0.90 -1.6 5,849,778 - -0.5 5,849,778 - +0.5 5,849,863 + -0.5 5,849,864 - -0.6 5,849,942 - +2.0 5,850,099 - +0.6 5,850,099 - -0.3 5,850,099 - -0.7 5,850,099 - -2.0 5,850,111 + -1.3 5,850,111 + +0.9 5,850,111 + +1.6 5,850,111 + -1.0 5,850,111 + -0.3 5,850,112 - +0.7 5,850,113 + +0.3 5,850,114 - -1.1 5,850,233 + +0.0 5,850,234 - -0.8 5,850,234 - -0.1 5,850,234 - -0.2 5,850,243 + +0.3 5,850,244 - -0.3 5,850,244 - +1.1 5,850,244 - +0.3 5,850,280 - -0.3 5,850,333 + -2.0 5,850,377 + -0.9 5,850,378 - -1.7 5,850,584 + Psyr_4935 0.29 -1.0 5,850,584 + Psyr_4935 0.29 -1.4 5,850,584 + Psyr_4935 0.29 +0.9 5,850,584 + Psyr_4935 0.29 -0.5 5,850,585 - Psyr_4935 0.29 +1.1 5,850,585 - Psyr_4935 0.29 -0.4 5,850,585 - Psyr_4935 0.29 -1.2 5,850,661 + Psyr_4935 0.36 +0.4 5,850,662 - Psyr_4935 0.36 +1.4 5,850,662 - Psyr_4935 0.36 -0.6 5,850,662 - Psyr_4935 0.36 +0.7 5,850,680 + Psyr_4935 0.38 +0.5 5,850,681 - Psyr_4935 0.38 -0.7 5,850,681 - Psyr_4935 0.38 +0.1 5,850,681 - Psyr_4935 0.38 -1.5 5,850,728 + Psyr_4935 0.42 -1.5 5,850,729 - Psyr_4935 0.42 +0.8 5,850,729 - Psyr_4935 0.42 -0.5 5,850,729 - Psyr_4935 0.42 +0.9 5,850,746 + Psyr_4935 0.44 -0.2 5,850,747 - Psyr_4935 0.44 -0.5 5,850,796 + Psyr_4935 0.48 -0.6 5,850,796 + Psyr_4935 0.48 +0.8 5,850,796 + Psyr_4935 0.48 -0.0 5,850,800 + Psyr_4935 0.49 -2.3 5,850,800 + Psyr_4935 0.49 +1.1 5,850,801 - Psyr_4935 0.49 +0.3 5,850,801 - Psyr_4935 0.49 -0.2 5,850,801 - Psyr_4935 0.49 -1.1 5,850,839 + Psyr_4935 0.52 +1.1 5,850,840 - Psyr_4935 0.52 -0.2 5,850,950 + Psyr_4935 0.63 -0.6 5,850,950 + Psyr_4935 0.63 +0.2 5,850,950 + Psyr_4935 0.63 +1.1 5,850,950 + Psyr_4935 0.63 +0.3 5,850,951 - Psyr_4935 0.63 +0.6 5,850,951 - Psyr_4935 0.63 +0.2 5,851,013 + Psyr_4935 0.68 -0.2 5,851,013 + Psyr_4935 0.68 -0.4 5,851,013 + Psyr_4935 0.68 -2.0 5,851,013 + Psyr_4935 0.68 -1.5 5,851,013 + Psyr_4935 0.68 -0.2 5,851,013 + Psyr_4935 0.68 -2.3 5,851,013 + Psyr_4935 0.68 +2.7 5,851,014 - Psyr_4935 0.69 -0.8 5,851,014 - Psyr_4935 0.69 +0.0 5,851,014 - Psyr_4935 0.69 +0.5 5,851,014 - Psyr_4935 0.69 -0.4 5,851,014 - Psyr_4935 0.69 +1.0 5,851,064 - Psyr_4935 0.73 -1.4 5,851,118 + Psyr_4935 0.78 -0.8 5,851,118 + Psyr_4935 0.78 +0.3 5,851,136 + Psyr_4935 0.80 -0.5 5,851,136 + Psyr_4935 0.80 -0.2 5,851,136 + Psyr_4935 0.80 -0.6 5,851,136 + Psyr_4935 0.80 +0.2 5,851,136 + Psyr_4935 0.80 -0.4 5,851,136 + Psyr_4935 0.80 +0.8 5,851,137 - Psyr_4935 0.80 -0.3 5,851,137 - Psyr_4935 0.80 +0.3 5,851,137 - Psyr_4935 0.80 +1.2 5,851,137 - Psyr_4935 0.80 -1.0 5,851,137 - Psyr_4935 0.80 -0.2 5,851,137 - Psyr_4935 0.80 -1.4 5,851,169 + Psyr_4935 0.83 +0.1 5,851,259 + -2.8 5,851,305 - -0.7 5,851,336 + -1.0 5,851,410 + -0.2 5,851,410 + +1.0 5,851,410 + -0.2 5,851,411 - -0.7 5,851,411 - -2.3 5,852,042 - +0.3 5,852,042 - -0.8 5,852,044 + +0.0 5,852,044 + -0.4 5,852,044 + -0.2 5,852,045 - +0.6 5,852,253 + -1.0 5,852,254 - -0.1 5,852,301 + -0.6 5,852,301 + +0.8 5,852,301 + -2.3 5,852,301 + -1.1 5,852,302 - -0.8 5,852,302 - +0.5 5,852,302 - +0.8 5,852,302 - +0.2 5,852,302 - -0.3 5,852,302 - -0.5
Or see this region's nucleotide sequence