Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4924

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,837,227	+		Psyr_4923	0.75	-0.5
5,837,235	+		Psyr_4923	0.76	+0.2
5,837,235	+		Psyr_4923	0.76	-0.2
5,837,236	-		Psyr_4923	0.76	+2.1
5,837,236	-		Psyr_4923	0.76	-1.6
5,837,236	-		Psyr_4923	0.76	-1.1
5,837,236	-		Psyr_4923	0.76	-1.1
5,837,236	-		Psyr_4923	0.76	+1.0
5,837,280	+		Psyr_4923	0.81	-0.6
5,837,328	+		Psyr_4923	0.86	+2.1
5,837,328	+		Psyr_4923	0.86	+1.1
5,837,329	-		Psyr_4923	0.86	-0.2
5,837,329	-		Psyr_4923	0.86	+0.3
5,837,359	+		Psyr_4923	0.89	+1.0
5,837,359	+		Psyr_4923	0.89	+0.5
5,837,359	+		Psyr_4923	0.89	-1.5
5,837,360	-		Psyr_4923	0.90	-0.9
5,837,361	+		Psyr_4923	0.90	+0.2
5,837,361	+		Psyr_4923	0.90	+1.0
5,837,362	-		Psyr_4923	0.90	-1.3
5,837,362	-		Psyr_4923	0.90	-1.6
5,837,362	-		Psyr_4923	0.90	-0.0
5,837,362	-		Psyr_4923	0.90	-0.9
5,837,362	-		Psyr_4923	0.90	+0.6
5,837,362	-		Psyr_4923	0.90	-1.3
5,837,362	-		Psyr_4923	0.90	-0.3
5,837,362	-		Psyr_4923	0.90	-0.5
5,837,362	-		Psyr_4923	0.90	+1.0
5,837,362	-		Psyr_4923	0.90	-0.7
5,837,362	-		Psyr_4923	0.90	+1.2
5,837,362	-		Psyr_4923	0.90	-2.0
5,837,448	-				-0.5
5,837,451	+				-0.7
5,837,451	+				-0.2
5,837,452	-				-1.5
5,837,452	-				-0.5
5,837,452	-				-1.8
5,837,452	-				+0.4
5,837,452	-				+1.0
5,837,456	+				-1.5
5,837,456	+				-0.1
5,837,457	-				+0.3
5,837,457	-				+0.2
5,837,457	-				-0.5
5,837,490	-				+0.8
5,837,502	-				-0.7
5,837,532	+				-0.3
5,837,533	-				+1.0
5,837,597	+				-0.4
5,837,707	+				-0.4
5,837,708	-				-2.0
5,837,748	+				-0.2
5,837,772	-				+2.5
5,837,782	+				+0.3
5,837,782	+				+1.2
5,837,783	-				-0.6
5,837,783	-				+0.9
5,837,793	+				-0.2
5,837,794	-				-1.0
5,837,794	-				+1.6
5,837,807	+				-1.0
5,837,848	+				+0.1
5,837,848	+				-1.7
5,837,849	-				+0.8
5,837,849	-				-0.4
5,837,852	+				-2.1
5,837,852	+				+1.3
5,837,852	+				-1.0
5,837,852	+				-0.1
5,837,853	-				-1.7
5,837,853	-				-1.3
5,837,853	-				+0.7
5,837,853	-				-0.6
5,837,853	-				+1.0
5,837,853	-				+1.1
5,837,853	-				-1.4
5,837,853	-				-0.1
5,837,854	+				-0.5
5,837,854	+				-0.6
5,837,854	+				+0.7
5,837,854	+				+0.7
5,837,854	+				+0.3
5,837,854	+				+0.7
5,837,855	-				+1.3
5,837,855	-				-0.5
5,837,855	-				+0.4
5,837,855	-				+0.3
5,837,855	-				+1.2
5,837,855	-				+0.5
5,837,855	-				+0.7
5,837,856	+				+2.3
5,837,856	+				+0.6
5,837,856	+				-0.3
5,837,856	+				+1.3
5,837,857	-				+0.9
5,837,857	-				-1.1
5,837,857	-				+1.1
5,837,858	+				-0.2
5,837,858	+				+0.6
5,837,860	+				+0.2
5,837,860	+				+1.1
5,837,860	+				-0.7
5,837,861	-				-1.0
5,837,861	-				-0.6
5,837,876	+				-0.2
5,837,939	-				-0.6
5,837,939	-				+0.6
5,837,965	-				-0.6
5,837,978	+				+2.3
5,837,978	+				-1.3
5,837,978	+				+1.3
5,837,978	+				+0.7
5,837,979	-				-0.2
5,837,979	-				+0.5
5,837,979	-				+1.0
5,837,979	-				-0.7
5,837,979	-				+0.1
5,838,038	+				-0.8
5,838,063	-				-3.2
5,838,087	+				+1.4
5,838,087	+				-0.2
5,838,088	-				-2.1
5,838,089	+				-1.3
5,838,089	+				-0.2
5,838,089	+				-0.3
5,838,089	+				-1.4
5,838,090	-				+1.0
5,838,093	+				+0.0
5,838,093	+				-1.7
5,838,093	+				-1.6
5,838,093	+				+1.7
5,838,093	+				-0.6
5,838,093	+				+0.4
5,838,093	+				+0.4
5,838,094	-				-1.0
5,838,094	-				+0.1
5,838,094	-				-0.3
5,838,110	+				+0.1
5,838,111	-				-1.8
5,838,111	-				+0.1
5,838,111	-				+1.3
5,838,113	+				+1.9
5,838,175	+				-0.5
5,838,175	+				+0.1
5,838,290	+		Psyr_4924	0.10	-0.8
5,838,290	+		Psyr_4924	0.10	+0.1
5,838,303	+		Psyr_4924	0.11	-1.6
5,838,310	+		Psyr_4924	0.12	-1.3
5,838,310	+		Psyr_4924	0.12	-0.9
5,838,310	+		Psyr_4924	0.12	-0.1
5,838,311	-		Psyr_4924	0.12	+0.8
5,838,311	-		Psyr_4924	0.12	+0.5
5,838,339	+		Psyr_4924	0.15	+0.0
5,838,339	+		Psyr_4924	0.15	+0.1
5,838,340	-		Psyr_4924	0.15	+0.3
5,838,352	+		Psyr_4924	0.16	-0.9
5,838,352	+		Psyr_4924	0.16	-1.1
5,838,353	-		Psyr_4924	0.16	-1.4
5,838,353	-		Psyr_4924	0.16	-1.6
5,838,353	-		Psyr_4924	0.16	+0.2
5,838,353	-		Psyr_4924	0.16	-0.3
5,838,353	-		Psyr_4924	0.16	+1.3
5,838,353	-		Psyr_4924	0.16	+0.4
5,838,381	+		Psyr_4924	0.19	-0.3
5,838,382	-		Psyr_4924	0.19	+0.6
5,838,404	+		Psyr_4924	0.21	+0.0
5,838,404	+		Psyr_4924	0.21	+1.3
5,838,404	+		Psyr_4924	0.21	-1.2
5,838,529	-		Psyr_4924	0.32	+1.2
5,838,540	-		Psyr_4924	0.33	+1.4
5,838,540	-		Psyr_4924	0.33	-1.5
5,838,693	+		Psyr_4924	0.47	+1.1
5,838,693	+		Psyr_4924	0.47	-1.9
5,838,693	+		Psyr_4924	0.47	+0.0
5,838,693	+		Psyr_4924	0.47	+0.7
5,838,693	+		Psyr_4924	0.47	+0.3
5,838,693	+		Psyr_4924	0.47	-1.9
5,838,693	+		Psyr_4924	0.47	+0.1
5,838,716	-		Psyr_4924	0.49	-1.1
5,838,716	-		Psyr_4924	0.49	+0.1
5,838,759	+		Psyr_4924	0.53	+0.1
5,838,760	-		Psyr_4924	0.53	-3.3
5,838,777	+		Psyr_4924	0.55	+1.7
5,838,777	+		Psyr_4924	0.55	+0.2
5,838,777	+		Psyr_4924	0.55	+0.0
5,838,778	-		Psyr_4924	0.55	+0.1
5,838,778	-		Psyr_4924	0.55	+1.0
5,838,778	-		Psyr_4924	0.55	-1.4
5,838,788	+		Psyr_4924	0.56	-0.6
5,838,791	+		Psyr_4924	0.56	+0.6
5,838,792	-		Psyr_4924	0.56	+1.0
5,838,792	-		Psyr_4924	0.56	-0.5
5,838,802	+		Psyr_4924	0.57	-0.7
5,838,802	+		Psyr_4924	0.57	-0.9
5,838,803	-		Psyr_4924	0.57	-0.0
5,838,803	-		Psyr_4924	0.57	-0.6
5,838,803	-		Psyr_4924	0.57	-0.2
5,838,803	-		Psyr_4924	0.57	-0.5
5,838,837	-		Psyr_4924	0.60	+0.6
5,838,932	+		Psyr_4924	0.69	+0.4
5,838,933	-		Psyr_4924	0.69	-1.1
5,839,033	+		Psyr_4924	0.79	-0.1
5,839,034	-		Psyr_4924	0.79	+0.5
5,839,034	-		Psyr_4924	0.79	+0.0
5,839,034	-		Psyr_4924	0.79	-2.0
5,839,034	-		Psyr_4924	0.79	-0.8
5,839,034	-		Psyr_4924	0.79	-0.1
5,839,065	-		Psyr_4924	0.81	+0.4
5,839,065	-		Psyr_4924	0.81	-0.2
5,839,074	+		Psyr_4924	0.82	+1.2
5,839,074	+		Psyr_4924	0.82	+0.5
5,839,074	+		Psyr_4924	0.82	-0.3
5,839,074	+		Psyr_4924	0.82	-1.1
5,839,075	-		Psyr_4924	0.82	-0.6
5,839,075	-		Psyr_4924	0.82	-1.7
5,839,075	-		Psyr_4924	0.82	+0.2
5,839,075	-		Psyr_4924	0.82	-1.7
5,839,075	-		Psyr_4924	0.82	+0.3
5,839,107	-		Psyr_4924	0.85	+0.0
5,839,146	+		Psyr_4924	0.89	-0.9
5,839,147	-		Psyr_4924	0.89	-0.6
5,839,147	-		Psyr_4924	0.89	+1.0
5,839,147	-		Psyr_4924	0.89	+1.0
5,839,208	+				-0.8
5,839,208	+				+0.1
5,839,208	+				-2.0
5,839,208	+				-0.8
5,839,208	+				-0.2
5,839,209	-				-0.3
5,839,209	-				-1.6
5,839,209	-				+1.2
5,839,213	-				-0.5
5,839,243	+				+1.6
5,839,243	+				+0.1
5,839,274	+				-0.2
5,839,274	+				+1.3
5,839,275	-				+0.0
5,839,275	-				-0.5
5,839,275	-				-1.0
5,839,275	-				-1.8
5,839,275	-				-0.8
5,839,317	-				-0.8
5,839,317	-				+0.3
5,839,317	-				-0.2
5,839,327	-				+4.4
5,839,327	-				+1.9
5,839,382	+				+0.2
5,839,382	+				+0.2
5,839,382	+				-0.1
5,839,382	+				-1.0
5,839,382	+				-0.5
5,839,382	+				-0.6
5,839,383	-				+1.3
5,839,383	-				-0.0
5,839,383	-				+1.2
5,839,383	-				+0.8
5,839,415	+				+0.8
5,839,415	+				-1.6
5,839,415	+				+0.6
5,839,416	-				+0.4
5,839,608	-		Psyr_4925	0.27	-0.4
5,839,615	+		Psyr_4925	0.28	+0.0
5,839,664	+		Psyr_4925	0.34	+0.2
5,839,726	-		Psyr_4925	0.43	-0.1
5,839,835	+		Psyr_4925	0.58	-0.2
5,839,835	+		Psyr_4925	0.58	-0.5
5,839,835	+		Psyr_4925	0.58	-0.8
5,839,835	+		Psyr_4925	0.58	+0.1
5,839,835	+		Psyr_4925	0.58	-1.8
5,839,835	+		Psyr_4925	0.58	+0.0
5,839,835	+		Psyr_4925	0.58	-0.1
5,839,836	-		Psyr_4925	0.58	-0.8
5,839,836	-		Psyr_4925	0.58	-0.8
5,839,836	-		Psyr_4925	0.58	+1.6
5,839,836	-		Psyr_4925	0.58	-0.4
5,839,836	-		Psyr_4925	0.58	+0.6
5,839,836	-		Psyr_4925	0.58	-0.4
5,839,836	-		Psyr_4925	0.58	-2.3
5,839,836	-		Psyr_4925	0.58	-1.1
5,839,877	+		Psyr_4925	0.63	-2.5
5,839,935	+		Psyr_4925	0.71	-0.8
5,839,935	+		Psyr_4925	0.71	-2.6
5,839,936	-		Psyr_4925	0.71	-0.8
5,839,936	-		Psyr_4925	0.71	-0.8
5,839,936	-		Psyr_4925	0.71	+0.8
5,839,947	+		Psyr_4925	0.73	+0.1
5,839,948	-		Psyr_4925	0.73	+2.4
5,840,064	+		Psyr_4925	0.89	-0.2
5,840,064	+		Psyr_4925	0.89	-2.7
5,840,065	-		Psyr_4925	0.89	+0.7
5,840,065	-		Psyr_4925	0.89	+0.3
5,840,065	-		Psyr_4925	0.89	-0.6
5,840,190	+				-0.5
5,840,190	+				+0.2
5,840,190	+				+0.0
5,840,190	+				-0.7
5,840,191	-				-0.0
5,840,193	+				-0.5
5,840,193	+				-0.3
5,840,193	+				-0.8
5,840,193	+				+0.2
5,840,193	+				-0.8
5,840,193	+				-2.5
5,840,193	+				-0.8
5,840,193	+				-1.8
5,840,193	+				-0.5
5,840,193	+				-0.4
5,840,193	+				+1.8
5,840,193	+				+0.9
5,840,193	+				-0.2
5,840,193	+				-1.2
5,840,193	+				-1.6
5,840,193	+				+0.1
5,840,193	+				-1.1
5,840,193	+				-0.5
5,840,193	+				-1.1
5,840,193	+				+3.4
5,840,193	+				+0.0
5,840,194	-				+1.1
5,840,194	-				+0.4
5,840,194	-				+0.5
5,840,194	-				-0.3
5,840,194	-				-0.2
5,840,194	-				+0.6
5,840,194	-				+0.0
5,840,194	-				-0.5
5,840,194	-				+0.2
5,840,194	-				-1.0
5,840,194	-				+1.3
5,840,194	-				-1.4
5,840,194	-				+1.1
5,840,241	+		Psyr_4926	0.17	+0.0
5,840,241	+		Psyr_4926	0.17	-0.9
5,840,241	+		Psyr_4926	0.17	-0.8
5,840,241	+		Psyr_4926	0.17	-1.3
5,840,241	+		Psyr_4926	0.17	-0.3
5,840,241	+		Psyr_4926	0.17	-0.5
5,840,241	+		Psyr_4926	0.17	+0.2
5,840,242	-		Psyr_4926	0.18	-0.2
5,840,242	-		Psyr_4926	0.18	-0.6
5,840,242	-		Psyr_4926	0.18	-0.4
5,840,242	-		Psyr_4926	0.18	+0.8