Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4890

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,800,781	+		Psyr_4889	0.58	-0.3
5,800,781	+		Psyr_4889	0.58	+0.0
5,800,781	+		Psyr_4889	0.58	-0.5
5,800,781	+		Psyr_4889	0.58	+0.7
5,800,781	+		Psyr_4889	0.58	-0.9
5,800,781	+		Psyr_4889	0.58	-2.4
5,800,781	+		Psyr_4889	0.58	+0.9
5,800,781	+		Psyr_4889	0.58	-0.2
5,800,781	+		Psyr_4889	0.58	-0.3
5,800,781	+		Psyr_4889	0.58	-1.7
5,800,781	+		Psyr_4889	0.58	+0.3
5,800,781	+		Psyr_4889	0.58	-1.6
5,800,781	+		Psyr_4889	0.58	+0.1
5,800,781	+		Psyr_4889	0.58	-1.2
5,800,781	+		Psyr_4889	0.58	-0.4
5,800,782	-		Psyr_4889	0.58	-0.8
5,800,782	-		Psyr_4889	0.58	-2.0
5,800,782	-		Psyr_4889	0.58	+0.3
5,800,782	-		Psyr_4889	0.58	-1.1
5,800,782	-		Psyr_4889	0.58	+2.8
5,800,782	-		Psyr_4889	0.58	+1.6
5,800,782	-		Psyr_4889	0.58	-0.3
5,800,782	-		Psyr_4889	0.58	-0.4
5,800,782	-		Psyr_4889	0.58	+0.2
5,800,782	-		Psyr_4889	0.58	+0.5
5,800,782	-		Psyr_4889	0.58	-0.2
5,800,782	-		Psyr_4889	0.58	-0.3
5,800,782	-		Psyr_4889	0.58	-0.6
5,800,784	+		Psyr_4889	0.58	+0.0
5,800,784	+		Psyr_4889	0.58	+0.2
5,800,784	+		Psyr_4889	0.58	+0.4
5,800,784	+		Psyr_4889	0.58	-1.8
5,800,784	+		Psyr_4889	0.58	+1.3
5,800,784	+		Psyr_4889	0.58	+2.8
5,800,785	-		Psyr_4889	0.58	+0.6
5,800,785	-		Psyr_4889	0.58	+0.5
5,800,785	-		Psyr_4889	0.58	-0.4
5,800,785	-		Psyr_4889	0.58	+1.4
5,800,842	-		Psyr_4889	0.61	-2.1
5,800,936	+		Psyr_4889	0.66	+0.6
5,800,936	+		Psyr_4889	0.66	-0.5
5,800,936	+		Psyr_4889	0.66	-0.5
5,800,936	+		Psyr_4889	0.66	+8.4
5,800,936	+		Psyr_4889	0.66	+1.1
5,800,936	+		Psyr_4889	0.66	+1.6
5,800,936	+		Psyr_4889	0.66	-1.9
5,800,936	+		Psyr_4889	0.66	-1.3
5,800,937	-		Psyr_4889	0.66	-0.8
5,800,937	-		Psyr_4889	0.66	-0.9
5,800,937	-		Psyr_4889	0.66	-1.4
5,800,937	-		Psyr_4889	0.66	-2.7
5,800,937	-		Psyr_4889	0.66	-0.6
5,801,034	-		Psyr_4889	0.72	+2.0
5,801,090	-		Psyr_4889	0.75	-0.3
5,801,101	+		Psyr_4889	0.75	-0.1
5,801,101	+		Psyr_4889	0.75	-1.1
5,801,101	+		Psyr_4889	0.75	-0.1
5,801,101	+		Psyr_4889	0.75	-1.4
5,801,101	+		Psyr_4889	0.75	-1.0
5,801,101	+		Psyr_4889	0.75	+0.3
5,801,102	-		Psyr_4889	0.75	+0.2
5,801,102	-		Psyr_4889	0.75	-1.2
5,801,102	-		Psyr_4889	0.75	+0.3
5,801,102	-		Psyr_4889	0.75	-1.1
5,801,102	-		Psyr_4889	0.75	+0.4
5,801,110	+		Psyr_4889	0.76	+0.1
5,801,111	-		Psyr_4889	0.76	-0.0
5,801,167	+		Psyr_4889	0.79	+0.9
5,801,167	+		Psyr_4889	0.79	+0.9
5,801,167	+		Psyr_4889	0.79	-2.8
5,801,167	+		Psyr_4889	0.79	-0.3
5,801,167	+		Psyr_4889	0.79	+0.7
5,801,167	+		Psyr_4889	0.79	-0.6
5,801,167	+		Psyr_4889	0.79	+2.5
5,801,167	+		Psyr_4889	0.79	+0.1
5,801,168	-		Psyr_4889	0.79	-1.0
5,801,168	-		Psyr_4889	0.79	-0.4
5,801,168	-		Psyr_4889	0.79	+1.3
5,801,168	-		Psyr_4889	0.79	-0.1
5,801,168	-		Psyr_4889	0.79	-0.6
5,801,168	-		Psyr_4889	0.79	-0.8
5,801,168	-		Psyr_4889	0.79	-1.3
5,801,168	-		Psyr_4889	0.79	+4.9
5,801,179	+		Psyr_4889	0.80	+1.0
5,801,179	+		Psyr_4889	0.80	-1.9
5,801,180	-		Psyr_4889	0.80	-0.1
5,801,180	-		Psyr_4889	0.80	-0.4
5,801,180	-		Psyr_4889	0.80	+1.8
5,801,180	-		Psyr_4889	0.80	+0.3
5,801,180	-		Psyr_4889	0.80	-0.6
5,801,180	-		Psyr_4889	0.80	-0.1
5,801,180	-		Psyr_4889	0.80	+1.3
5,801,185	+		Psyr_4889	0.80	-0.4
5,801,185	+		Psyr_4889	0.80	-0.0
5,801,185	+		Psyr_4889	0.80	+2.6
5,801,185	+		Psyr_4889	0.80	-0.1
5,801,185	+		Psyr_4889	0.80	+0.3
5,801,185	+		Psyr_4889	0.80	+1.0
5,801,185	+		Psyr_4889	0.80	+1.3
5,801,185	+		Psyr_4889	0.80	-1.0
5,801,185	+		Psyr_4889	0.80	+0.3
5,801,185	+		Psyr_4889	0.80	+1.0
5,801,185	+		Psyr_4889	0.80	+0.8
5,801,185	+		Psyr_4889	0.80	+0.5
5,801,185	+		Psyr_4889	0.80	-0.6
5,801,185	+		Psyr_4889	0.80	-0.0
5,801,185	+		Psyr_4889	0.80	+0.1
5,801,185	+		Psyr_4889	0.80	-1.1
5,801,185	+		Psyr_4889	0.80	+1.0
5,801,185	+		Psyr_4889	0.80	+0.3
5,801,185	+		Psyr_4889	0.80	-0.5
5,801,185	+		Psyr_4889	0.80	+0.7
5,801,185	+		Psyr_4889	0.80	-0.9
5,801,185	+		Psyr_4889	0.80	-3.3
5,801,185	+		Psyr_4889	0.80	-0.7
5,801,185	+		Psyr_4889	0.80	+0.0
5,801,185	+		Psyr_4889	0.80	-0.3
5,801,185	+		Psyr_4889	0.80	+0.2
5,801,185	+		Psyr_4889	0.80	+0.7
5,801,185	+		Psyr_4889	0.80	-1.3
5,801,185	+		Psyr_4889	0.80	+3.2
5,801,185	+		Psyr_4889	0.80	+0.7
5,801,185	+		Psyr_4889	0.80	-0.0
5,801,185	+		Psyr_4889	0.80	-0.8
5,801,185	+		Psyr_4889	0.80	+0.2
5,801,185	+		Psyr_4889	0.80	-0.5
5,801,185	+		Psyr_4889	0.80	-1.0
5,801,185	+		Psyr_4889	0.80	+1.0
5,801,185	+		Psyr_4889	0.80	+1.1
5,801,185	+		Psyr_4889	0.80	-0.5
5,801,185	+		Psyr_4889	0.80	-0.2
5,801,185	+		Psyr_4889	0.80	+0.0
5,801,185	+		Psyr_4889	0.80	+0.2
5,801,185	+		Psyr_4889	0.80	-1.3
5,801,185	+		Psyr_4889	0.80	-2.8
5,801,185	+		Psyr_4889	0.80	-0.6
5,801,185	+		Psyr_4889	0.80	-1.1
5,801,186	-		Psyr_4889	0.80	+1.5
5,801,186	-		Psyr_4889	0.80	-0.3
5,801,186	-		Psyr_4889	0.80	+0.6
5,801,186	-		Psyr_4889	0.80	-0.3
5,801,186	-		Psyr_4889	0.80	+1.1
5,801,186	-		Psyr_4889	0.80	-1.5
5,801,186	-		Psyr_4889	0.80	+0.2
5,801,186	-		Psyr_4889	0.80	+0.9
5,801,186	-		Psyr_4889	0.80	+0.7
5,801,186	-		Psyr_4889	0.80	+0.1
5,801,186	-		Psyr_4889	0.80	+0.6
5,801,186	-		Psyr_4889	0.80	-0.6
5,801,186	-		Psyr_4889	0.80	+1.1
5,801,186	-		Psyr_4889	0.80	+0.4
5,801,186	-		Psyr_4889	0.80	+0.6
5,801,186	-		Psyr_4889	0.80	+0.0
5,801,186	-		Psyr_4889	0.80	-0.2
5,801,186	-		Psyr_4889	0.80	-0.1
5,801,186	-		Psyr_4889	0.80	-0.8
5,801,186	-		Psyr_4889	0.80	+0.3
5,801,186	-		Psyr_4889	0.80	+0.9
5,801,186	-		Psyr_4889	0.80	+0.1
5,801,186	-		Psyr_4889	0.80	+0.5
5,801,186	-		Psyr_4889	0.80	-1.5
5,801,186	-		Psyr_4889	0.80	-0.7
5,801,186	-		Psyr_4889	0.80	+2.9
5,801,186	-		Psyr_4889	0.80	-0.0
5,801,186	-		Psyr_4889	0.80	+0.9
5,801,186	-		Psyr_4889	0.80	+0.1
5,801,186	-		Psyr_4889	0.80	-0.3
5,801,186	-		Psyr_4889	0.80	+0.6
5,801,186	-		Psyr_4889	0.80	-0.3
5,801,186	-		Psyr_4889	0.80	+0.7
5,801,186	-		Psyr_4889	0.80	-1.5
5,801,186	-		Psyr_4889	0.80	+1.2
5,801,186	-		Psyr_4889	0.80	-0.2
5,801,186	-		Psyr_4889	0.80	-0.9
5,801,186	-		Psyr_4889	0.80	-0.8
5,801,186	-		Psyr_4889	0.80	-0.3
5,801,186	-		Psyr_4889	0.80	-0.0
5,801,186	-		Psyr_4889	0.80	-1.2
5,801,186	-		Psyr_4889	0.80	-0.5
5,801,186	-		Psyr_4889	0.80	-1.6
5,801,186	-		Psyr_4889	0.80	+0.6
5,801,186	-		Psyr_4889	0.80	+0.7
5,801,186	-		Psyr_4889	0.80	+0.5
5,801,186	-		Psyr_4889	0.80	+0.0
5,801,186	-		Psyr_4889	0.80	-0.6
5,801,186	-		Psyr_4889	0.80	+0.9
5,801,186	-		Psyr_4889	0.80	-0.7
5,801,186	-		Psyr_4889	0.80	-1.6
5,801,186	-		Psyr_4889	0.80	-1.2
5,801,186	-		Psyr_4889	0.80	-0.8
5,801,189	+		Psyr_4889	0.80	+0.2
5,801,189	+		Psyr_4889	0.80	+0.0
5,801,189	+		Psyr_4889	0.80	-0.1
5,801,189	+		Psyr_4889	0.80	+0.3
5,801,189	+		Psyr_4889	0.80	+0.6
5,801,189	+		Psyr_4889	0.80	+2.4
5,801,190	-		Psyr_4889	0.80	+0.1
5,801,190	-		Psyr_4889	0.80	-0.4
5,801,190	-		Psyr_4889	0.80	+0.5
5,801,190	-		Psyr_4889	0.80	+2.0
5,801,306	+		Psyr_4889	0.87	+0.7
5,801,306	+		Psyr_4889	0.87	+1.1
5,801,307	-		Psyr_4889	0.87	+0.8
5,801,338	+		Psyr_4889	0.88	+1.3
5,801,338	+		Psyr_4889	0.88	+0.1
5,801,338	+		Psyr_4889	0.88	-0.6
5,801,338	+		Psyr_4889	0.88	+0.1
5,801,338	+		Psyr_4889	0.88	-0.8
5,801,339	-		Psyr_4889	0.88	-0.4
5,801,339	-		Psyr_4889	0.88	-1.5
5,801,339	-		Psyr_4889	0.88	-0.4
5,801,339	-		Psyr_4889	0.88	+0.1
5,801,339	-		Psyr_4889	0.88	-1.2
5,801,339	-		Psyr_4889	0.88	+0.1
5,801,339	-		Psyr_4889	0.88	+1.1
5,801,339	-		Psyr_4889	0.88	+0.3
5,801,373	+				-0.6
5,801,373	+				+0.8
5,801,373	+				-0.1
5,801,373	+				+0.2
5,801,374	-				+0.1
5,801,374	-				+1.0
5,801,374	-				+0.9
5,801,377	+				-0.6
5,801,377	+				-0.4
5,801,377	+				+0.5
5,801,377	+				-1.3
5,801,378	-				-1.3
5,801,378	-				+3.0
5,801,378	-				-0.4
5,801,384	+				+0.5
5,801,412	+				+0.7
5,801,468	+				-0.1
5,801,468	+				+0.1
5,801,468	+				+0.0
5,801,468	+				+0.6
5,801,469	-				+0.7
5,801,469	-				-0.1
5,801,469	-				-0.2
5,801,469	-				+1.1
5,801,533	+				-1.2
5,801,534	-				+0.4
5,801,534	-				-0.7
5,801,534	-				+1.0
5,801,534	-				+0.4
5,801,581	+				+1.2
5,801,581	+				+0.2
5,801,581	+				-0.2
5,801,581	+				-1.5
5,801,581	+				-0.5
5,801,581	+				+0.9
5,801,581	+				+0.5
5,801,581	+				-1.1
5,801,581	+				+0.6
5,801,582	-				+1.1
5,801,582	-				+0.1
5,801,582	-				-0.6
5,801,582	-				+0.1
5,801,582	-				+0.4
5,801,582	-				-0.1
5,801,582	-				-0.5
5,801,582	-				-1.4
5,801,582	-				-1.0
5,801,585	+				-1.1
5,801,585	+				-0.4
5,801,585	+				-0.9
5,801,585	+				+1.7
5,801,585	+				+2.7
5,801,585	+				+0.5
5,801,585	+				-0.9
5,801,586	-				+1.5
5,801,586	-				-1.3
5,801,586	-				-0.0
5,801,586	-				+0.3
5,801,586	-				+1.7
5,801,586	-				-1.6
5,801,586	-				-0.7
5,801,586	-				-2.5
5,801,586	-				-0.5
5,801,593	+				+0.5
5,801,593	+				+0.2
5,801,594	-				+1.1
5,801,630	+				+0.6
5,801,630	+				-0.1
5,801,630	+				+0.4
5,801,631	-				-1.0
5,801,631	-				+1.5
5,801,631	-				+0.9
5,801,631	-				-2.0
5,801,631	-				-0.4
5,801,694	+				-0.6
5,801,734	-				+0.5
5,801,734	-				+3.1
5,801,734	-				+0.2
5,801,994	+		Psyr_4890	0.16	+0.0
5,801,994	+		Psyr_4890	0.16	+0.7
5,801,994	+		Psyr_4890	0.16	+1.6
5,801,994	+		Psyr_4890	0.16	+1.3
5,801,994	+		Psyr_4890	0.16	-1.3
5,801,994	+		Psyr_4890	0.16	+0.7
5,801,994	+		Psyr_4890	0.16	-0.5
5,801,994	+		Psyr_4890	0.16	-0.1
5,801,994	+		Psyr_4890	0.16	-0.1
5,801,998	+		Psyr_4890	0.17	-0.4
5,801,998	+		Psyr_4890	0.17	-0.7
5,801,998	+		Psyr_4890	0.17	-0.8
5,801,998	+		Psyr_4890	0.17	+0.0
5,801,998	+		Psyr_4890	0.17	-0.8
5,801,999	-		Psyr_4890	0.17	+2.6
5,801,999	-		Psyr_4890	0.17	+0.4
5,801,999	-		Psyr_4890	0.17	-1.0
5,801,999	-		Psyr_4890	0.17	-0.5
5,801,999	-		Psyr_4890	0.17	+0.7
5,802,017	+		Psyr_4890	0.18	+1.2
5,802,017	+		Psyr_4890	0.18	-1.7
5,802,018	-		Psyr_4890	0.18	+0.6
5,802,252	-		Psyr_4890	0.34	+1.5
5,802,363	-		Psyr_4890	0.41	-1.2
5,802,371	+		Psyr_4890	0.41	-0.3
5,802,441	+		Psyr_4890	0.46	+0.5
5,802,442	-		Psyr_4890	0.46	-0.8
5,802,442	-		Psyr_4890	0.46	-1.1
5,802,539	+		Psyr_4890	0.53	+2.7
5,802,539	+		Psyr_4890	0.53	-0.8
5,802,539	+		Psyr_4890	0.53	-1.2
5,802,540	-		Psyr_4890	0.53	-0.6
5,802,540	-		Psyr_4890	0.53	-0.5
5,802,540	-		Psyr_4890	0.53	+4.2
5,802,540	-		Psyr_4890	0.53	-0.5
5,802,543	+		Psyr_4890	0.53	-0.9
5,802,543	+		Psyr_4890	0.53	+0.5
5,802,543	+		Psyr_4890	0.53	-1.4
5,802,544	-		Psyr_4890	0.53	+0.3
5,802,596	+		Psyr_4890	0.56	+0.4
5,802,682	+		Psyr_4890	0.62	+0.6
5,802,682	+		Psyr_4890	0.62	+0.6
5,802,682	+		Psyr_4890	0.62	-0.1
5,802,683	-		Psyr_4890	0.62	+1.1
5,802,683	-		Psyr_4890	0.62	+3.3
5,802,683	-		Psyr_4890	0.62	+0.4
5,802,683	-		Psyr_4890	0.62	-0.1
5,802,711	+		Psyr_4890	0.64	-0.6
5,802,753	+		Psyr_4890	0.67	+1.1
5,802,753	+		Psyr_4890	0.67	-0.6
5,802,753	+		Psyr_4890	0.67	-0.0
5,802,759	+		Psyr_4890	0.67	-0.5
5,802,813	-		Psyr_4890	0.71	+0.1
5,802,886	+		Psyr_4890	0.76	+0.9
5,802,886	+		Psyr_4890	0.76	+0.6
5,802,886	+		Psyr_4890	0.76	-0.0
5,802,886	+		Psyr_4890	0.76	+3.5
5,802,886	+		Psyr_4890	0.76	-1.7
5,802,886	+		Psyr_4890	0.76	-0.0
5,802,886	+		Psyr_4890	0.76	+0.1
5,802,886	+		Psyr_4890	0.76	+1.5
5,802,886	+		Psyr_4890	0.76	-0.6
5,802,887	-		Psyr_4890	0.76	+0.3
5,802,887	-		Psyr_4890	0.76	+0.0
5,802,887	-		Psyr_4890	0.76	+0.1
5,802,887	-		Psyr_4890	0.76	-0.2
5,802,887	-		Psyr_4890	0.76	+0.2
5,802,887	-		Psyr_4890	0.76	+2.4
5,802,952	+		Psyr_4890	0.80	+1.6
5,802,953	-		Psyr_4890	0.80	-2.6
5,802,953	-		Psyr_4890	0.80	+1.5
5,803,059	+		Psyr_4890	0.87	+0.4
5,803,060	-		Psyr_4890	0.87	+0.8
5,803,060	-		Psyr_4890	0.87	-0.3
5,803,062	+		Psyr_4890	0.87	-1.2
5,803,062	+		Psyr_4890	0.87	-1.6
5,803,062	+		Psyr_4890	0.87	-0.2
5,803,062	+		Psyr_4890	0.87	+0.7
5,803,062	+		Psyr_4890	0.87	-0.5
5,803,062	+		Psyr_4890	0.87	+0.5
5,803,062	+		Psyr_4890	0.87	-0.0
5,803,062	+		Psyr_4890	0.87	-0.2
5,803,062	+		Psyr_4890	0.87	+0.1
5,803,062	+		Psyr_4890	0.87	+1.9
5,803,062	+		Psyr_4890	0.87	+0.5
5,803,062	+		Psyr_4890	0.87	-1.0
5,803,063	-		Psyr_4890	0.87	+0.9
5,803,063	-		Psyr_4890	0.87	-1.2
5,803,063	-		Psyr_4890	0.87	-0.7
5,803,063	-		Psyr_4890	0.87	+1.2
5,803,063	-		Psyr_4890	0.87	-0.4
5,803,063	-		Psyr_4890	0.87	-0.1
5,803,063	-		Psyr_4890	0.87	+0.4
5,803,145	-				-0.8
5,803,180	-				+1.2
5,803,180	-				-0.9
5,803,263	-				+0.2
5,803,368	-		Psyr_4891	0.15	+0.2
5,803,542	+		Psyr_4891	0.38	-2.3
5,803,542	+		Psyr_4891	0.38	-0.1
5,803,571	+		Psyr_4891	0.42	-0.1
5,803,571	+		Psyr_4891	0.42	-1.0
5,803,571	+		Psyr_4891	0.42	-1.8
5,803,572	-		Psyr_4891	0.42	+1.2
5,803,572	-		Psyr_4891	0.42	+0.7
5,803,572	-		Psyr_4891	0.42	-0.5
5,803,572	-		Psyr_4891	0.42	+0.8
5,803,572	-		Psyr_4891	0.42	+0.4
5,803,655	+		Psyr_4891	0.53	-1.2
5,803,655	+		Psyr_4891	0.53	-0.4
5,803,656	-		Psyr_4891	0.53	+0.1
5,803,663	+		Psyr_4891	0.54	-0.6
5,803,754	+		Psyr_4891	0.66	-0.4
5,803,791	-		Psyr_4891	0.71	-0.3
5,803,928	+		Psyr_4891	0.89	+0.0
5,803,928	+		Psyr_4891	0.89	-0.5
5,803,929	-		Psyr_4891	0.89	-2.3
5,803,996	+				-0.3
5,804,070	-				+0.0
5,804,109	+				+0.8
5,804,151	+				+1.4
5,804,152	-				-0.4
5,804,155	+				+0.2
5,804,155	+				-1.3
5,804,155	+				+2.5
5,804,155	+				-0.4
5,804,155	+				-0.3
5,804,155	+				-1.8
5,804,155	+				-0.6
5,804,155	+				+0.3
5,804,155	+				-1.3
5,804,155	+				+1.1
5,804,155	+				+0.5
5,804,155	+				+1.2
5,804,156	-				+0.3
5,804,156	-				-0.3
5,804,156	-				-0.7
5,804,156	-				-3.1
5,804,156	-				+1.1
5,804,156	-				+0.7
5,804,156	-				+0.1
5,804,156	-				-0.3
5,804,156	-				+0.2
5,804,159	+				-0.7
5,804,159	+				+1.1
5,804,159	+				+0.0
5,804,160	-				+0.5
5,804,160	-				+0.6
5,804,160	-				+1.2
5,804,160	-				-0.4
5,804,212	+				+1.7
5,804,212	+				-2.8
5,804,213	-				+0.2
5,804,213	-				+2.7
5,804,213	-				-1.9
5,804,213	-				+2.4
5,804,213	-				-0.2
5,804,213	-				+0.6
5,804,213	-				-1.3
5,804,213	-				+0.0